[Bioperl-l] Bio::Graphics::Glyph::translation.pm

Ewan Birney birney at ebi.ac.uk
Mon Mar 8 13:17:50 EST 2004

On Mon, 8 Mar 2004, Lincoln Stein wrote:

> Hash: SHA1
> You need to attach a Bio::PrimarySeqI to the Bio::SeqFeature::Generic, 
> not a Bio::SeqI.  I know this is confusing, but I think that you can 
> get the effect you want by changing this line to read:
> 	$feature->attach_seq($seq_object->seq);

We should probably get $feature->attach_seq(xxx) to do something magical 
with Bio::SeqI's...

This has always been unsatisfactory, but roll on parrot with its 
mark-and-sweep style GC so we can do something more sensible here 
(circular references...)

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