[Bioperl-l] determining orthologs...
paulo.david at netvisao.pt
Mon Mar 15 18:05:13 EST 2004
For new genes, maybe running a remote blast and setting 'expect', or
'percent identity', and 'minimum length' cut-offs (only consider a
possible ortholog if it spans, say, 70% of the query sequence).
Bob Freeman wrote:
> What are BioPerl developers doing at present to determine putative
> orthologs of a gene? BLINK? Unigene? LocusLink? And what about for
> new/hypothetical genes?
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