[Bioperl-l] Clustal/T-Coffee to Fasta

Brian Osborne brian_osborne at cognia.com
Wed Mar 17 15:51:04 EST 2004


You want to use AlignIO, and 'fasta' is one of its output formats. Unlike
SeqIO, AlignIO can't produce output in all of its input formats. Take a look
at the bptutorial, section III.2.2

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Alberto M R
Sent: Wednesday, March 17, 2004 2:52 PM
To: bioperl-l at bioperl.org
Cc: amrdavila at yahoo.com
Subject: [Bioperl-l] Clustal/T-Coffee to Fasta

I was looking in to the SeqIO module trying to know if it could convert
multiple alignments done with ClustalW/X (*.aln files) or T-Coffee to
Fasta sequences into a single file... no luck... there would be any other
Bioperl module to do that format conversion ?

Thanks, Alberto

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