[Bioperl-l] SearchIO::blast frac_aligned/identical/conserved bug fix

Steve Chervitz steve_chervitz at affymetrix.com
Thu Mar 18 15:58:40 EST 2004

Just wanted to let folks know that I recently fixed a bug regarding the 
reporting of fraction aligned/identical/conserved for BLASTX, TBLASTX, 
and TBLASTN reports. For details, see 
http://bugzilla.bioperl.org/show_bug.cgi?id=1597 .

This bug occurs when parsing these reports using SearchIO with 
-format=>'blast'. It is present in the 1.4 release (as well as 1.2.x 
and 1.3.x and possibly earlier). I fixed this in CVS on both branch-1-4 
and bioperl-live.

Steve Chervitz
AFFYMETRIX, INC. | 6550 Vallejo St. Ste 100 | Emeryville, CA 94608
Tel: 510-428-8530 | Fax: 510-428-8585 | Steve_Chervitz at affymetrix.com

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