[Bioperl-l] retrieving genomic sequence

Jason Stajich jason at cgt.duhs.duke.edu
Fri Mar 19 12:16:17 EST 2004

See Bio::DB::Fasta for a fast and easy way to do this for a local
copy of the genome you are interested in.  Bio::DB::GFF will also do this
for you if you want to load the data into a relational database.

On Fri, 19 Mar 2004, gabriele bucci wrote:

> Hi everibody.
> Does anyone know if I could use BioPerl for retrieving DNA string from
> multiple specified genomic region?
> I mean, eg: from chromosome 1 starting 1598675 to 1689000, from chr 2 100....
> to 101... ecc.
> I'm pretty sure it's possible but as a beginners as I'm I can't find the way
> trough the various perldocs....
> Thanks to everybody in advance.
> Gabriele
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l

Jason Stajich
Duke University
jason at cgt.mc.duke.edu

More information about the Bioperl-l mailing list