[Bioperl-l] How to extract intron's exon sequences?

Jason Stajich jason at cgt.duhs.duke.edu
Mon Mar 22 09:35:36 EST 2004

Really depends on the data you are working with.

Where are your annotations coming from.  What Species?  Ensembl has made
this easy to do for species in the ensembl system.

You can also write code to do this based on annotated sequence records
using Bio::SeqIO to parse and manipulating sequences and their

See the Feature-Annotation HOWTO on the bioperl HOWTO page for some more


On Mon, 22 Mar 2004, [gb2312] ÖÜ Óî wrote:

> Hi, everyone,
> Is there any module to esaily extract intron's upstream and downstream exon
> sequences? Thanks.
> Yu Zhou
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Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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