Matthew.Betts at ii.uib.no
Tue Mar 23 11:13:55 EST 2004
I've finally written the Bio::AlignIO:po module I mentioned way back in
November. I'm unsure of the procedure for submitting it (I've looked at
the FAQ). Should I just post it as an attachment to bioperl-l?
Also, I'm trying to think of some sensible tests, and have been looking at
AlignIO.t. The ones in there mainly seem to test that a sequence read in
from an example alignment has the correct name. Should I test more than
that? All suggestions very welcome.
Thanks in advance for your help,
On Thu, 13 Nov 2003, Jason Stajich wrote:
> One does not exist - would be happy for you to write one.
> AlignIO::clustalw or fasta would be good templates.
> An AlignIO pir parser wouldn't be too bad either if you get into it.
> On Thu, 13 Nov 2003, Matthew Betts wrote:
> > Hei,
> > Does anyone have a PO format reader for AlignIO? This is the native output
> > format for POA. It can also output in pir or clustalw, so it's not a big
> > problem. But I'd quite like to try to try my hand at writing the parser if
> > one doesn't exist already...
> > Thanks,
> > Matthew
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
Matthew Betts, mailto:matthew.betts at ii.uib.no
Phone: (+47) 55 58 40 22, Fax: (+47) 55 58 42 95
CBU, BCCS, HiB, UNIFOB / Universitetet i Bergen
Thormøhlensgt. 55, N-5008 Bergen, Norway
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