heikki at ebi.ac.uk
Tue Mar 23 11:42:46 EST 2004
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The recommended way of submitting new code is to open a bioperl bugzilla entry
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On Tuesday 23 Mar 2004 16:13, Matthew Betts wrote:
> I've finally written the Bio::AlignIO:po module I mentioned way back in
> November. I'm unsure of the procedure for submitting it (I've looked at
> the FAQ). Should I just post it as an attachment to bioperl-l?
> Also, I'm trying to think of some sensible tests, and have been looking at
> AlignIO.t. The ones in there mainly seem to test that a sequence read in
> from an example alignment has the correct name. Should I test more than
> that? All suggestions very welcome.
> Thanks in advance for your help,
> On Thu, 13 Nov 2003, Jason Stajich wrote:
> > One does not exist - would be happy for you to write one.
> > AlignIO::clustalw or fasta would be good templates.
> > An AlignIO pir parser wouldn't be too bad either if you get into it.
> > -jason
> > On Thu, 13 Nov 2003, Matthew Betts wrote:
> > > Hei,
> > >
> > > Does anyone have a PO format reader for AlignIO? This is the native
> > > output format for POA. It can also output in pir or clustalw, so it's
> > > not a big problem. But I'd quite like to try to try my hand at writing
> > > the parser if one doesn't exist already...
> > >
> > > Thanks,
> > >
> > > Matthew
> > --
> > Jason Stajich
> > Duke University
> > jason at cgt.mc.duke.edu
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_/ _/ _/ Heikki Lehvaslaiho heikki_at_ebi ac uk
_/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute
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