[Bioperl-l] free energy of two RNA

Tordoir Xavier xtordoir at ulg.ac.be
Wed May 19 03:23:56 EDT 2004

You can try to compute the free energy of a single molecule made of the
two stretches of RNA, connected by an artificial sequence linker (bases
that cannot pair). You may also have to constrain the folding to force the
position of the artificial loop.

Xavier Tordoir

> I have to calculate the free energy of binding between two RNA molecules
> (not  for each individual RNA). But these program allowed only one
> sequence?! not  two?
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