[Bioperl-l] Hmmsearch parsing
jason at cgt.duhs.duke.edu
Thu May 20 08:35:51 EDT 2004
Try Bio::SearchIO, with 'hmmer' as the format. Alternatively
Bio::Tools::HMMER::Results should also work. See the SearchIO HowTo for
$hit->significance (overall significance)
$hit->raw_score (bit score)
$hit->description for the hit description.
individual hsp bit scores and evalues are available from $hsp->evalue and
On Wed, 19 May 2004, Alberto Davila wrote:
> Hi All,
> I am still looking for some help to write a parser for the "hmmsearch"
> results, would anybody have a work example to provide, please ? I am
> mainly interested to parse the e-value, bit score, and definition.
> Thanks a lot.
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
jason at cgt.mc.duke.edu
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