[Bioperl-l] Gbrowse/BioSQL question

Hilmar Lapp hlapp at gmx.net
Sun May 23 22:45:11 EDT 2004

Just FYI, the changes I just committed should allow the version to be 
omitted when querying by the (accession,version,namespace) unique key. 
It will match whatever version you have, and you'll obviously get an 
exception if multiple match.

I'm not sure which query API the Gbrowse/Biosql adaptor uses (unique 
key or general query?). Simon?


On Wednesday, May 5, 2004, at 12:32  PM, Sean Davis wrote:

> Dear all,
> In the Gbrowse configuration file when using BioSQL as the underlying
> database schema, there is a requirement for version to be identified.  
> I
> have loaded refSeq and would like to use Gbrowse to browse the 
> entries, but,
> of course, there are varying version numbers in the current refSeq 
> file, so
> I can only search a subset at any given time.  Is there a way to deal 
> with
> this issue so that one can include multiple version numbers in the 
> default
> for searching?
> Thanks,
> Sean
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757

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