[Bioperl-l] graphing trees
boconnor at ucla.edu
Wed Nov 3 14:21:04 EST 2004
Bio::TreeIO::svggraph will let you create an SVG of a tree from a Newick
Sean Davis wrote:
> Did you look at:
> I happen to use R (statistical programming environment), which has
> some stuff for plotting trees (which I don't use).
> You might do a web search for "newick tree" to get stuff related to
> newick format and drawing it.
> On Nov 3, 2004, at 12:00 PM, Guillaume Rousse wrote:
>> Sean Davis wrote:
>>> Not a bioperl answer, but you might want to look at:
>>> Graphviz is a very nice package for dealing with graph visualization.
>> It's what I used sofar, however it's not that practical for trees:
>> - internal nodes are always visible
>> - edges are always directs
>> - you can't adjust their length easily
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