[Bioperl-l] problem installing bioperl-ext

Alicia Amadoz Alicia.Amadoz at uv.es
Tue Nov 16 07:03:05 EST 2004

Hi all,

I finally managed to install Bioperl in Fedora Core 2 with Perl 5.8.5.
It runs ok and passes the test of James Tisdall's book. But when I try
to install (with 'cpan>force install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz)
 I have some error:

  CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz
Checking if your kit is complete...
Looks good
Writing Makefile for Bio::Ext::Align
ERROR from evaluation of
/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't
locate Inline/MakeMaker.pm in @INC (@INC contains:
/usr/lib/perl5/5.8.5/i686-linux /usr/lib/perl5/5.8.5
/usr/lib/perl5/site_perl/5.8.5/i686-linux /usr/lib/perl5/site_perl/5.8.5
/usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2
/usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0
/usr/lib/perl5/site_perl /root/.cpan/build/bioperl-ext-1.4 .) at
./Makefile.PL line 1.
BEGIN failed--compilation aborted at ./Makefile.PL line 1.
Running make test
  Make had some problems, maybe interrupted? Won't test
Running make install
  Make had some problems, maybe interrupted? Won't install

I have been searching on the mailing-list archive but i couldn't find
anything useful. Thanks for your help.


Alicia Amadoz
Evolutionary Genetics Unit
Cavanilles Institute for Biodiversity and Evolutionary
University of Valencia
Apartado Oficial 22085
E-46071 Valencia SPAIN
Phone: (+34) 96 354 3687
FAX: (+34) 96 354 3670
e-mail: alicia.amadoz at uv.es
NOTE! For shipments by EXPRESS COURIER use "Instituto
Cavanilles de Biodiversidad y Biología Evolutiva,
Polígono de la Coma s/n, 46980 Paterna (Valencia),
Spain" instead of P.O. Box no. and Post Code/City above.

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