[Bioperl-l] problem installing bioperl-ext

Guillaume Rousse rousse at ccr.jussieu.fr
Tue Nov 16 07:17:36 EST 2004

Alicia Amadoz wrote:
> Hi all,
> I finally managed to install Bioperl in Fedora Core 2 with Perl 5.8.5.
> It runs ok and passes the test of James Tisdall's book. But when I try
> to install (with 'cpan>force install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz)
>  I have some error:
>   CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz
> Checking if your kit is complete...
> Looks good
> Writing Makefile for Bio::Ext::Align
> ERROR from evaluation of
> /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't
> locate Inline/MakeMaker.pm in @INC (@INC contains:
> /home/amadoz/.cpan/build/bioperl-1.4/Bio/Perl.pm
> /home/amadoz/.cpan/build/bioperl-1.4/blib/lib/Bio/Perl.pm
> /usr/lib/perl5/5.8.5/i686-linux /usr/lib/perl5/5.8.5
> /usr/lib/perl5/site_perl/5.8.5/i686-linux /usr/lib/perl5/site_perl/5.8.5
> /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2
> /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0
> /usr/lib/perl5/site_perl /root/.cpan/build/bioperl-ext-1.4 .) at
> ./Makefile.PL line 1.
> BEGIN failed--compilation aborted at ./Makefile.PL line 1.
> Running make test
>   Make had some problems, maybe interrupted? Won't test
> Running make install
>   Make had some problems, maybe interrupted? Won't install
> I have been searching on the mailing-list archive but i couldn't find
> anything useful. Thanks for your help.
Here is your error:
Can't locate Inline/MakeMaker.pm in @INC
Search in your distribution wich package is providing Inline/MakeMaker.pm.

Alternatively, you could use packages provided by www.biolinux.org if 
you're not familiar with perl module manual installation.
If you really need an officer in a hurry, take a nap
		-- Murphy's Military Laws n°5

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