[Bioperl-l] Core dump in t/protgraph on FreeBSD
Peter van Heusden
pvh at egenetics.com
Thu Nov 25 09:03:22 EST 2004
Aaron J. Mackey wrote:
> Please use the CVS HEAD ...
I've just reconfirmed - coredump on FreeBSD 4-STABLE with perl 5.8.5 on
protgraph.t, bioperl from clean checkout of CVS head.
> Fernan Aguero wrote:
>> +----[ Peter van Heusden <pvh at egenetics.com> (25.Nov.2004 07:03):
>> | Hi
>> Hi Peter!
>> I've been trying to get some spare time to test the 1.5
>> release candidates on FreeBSD, but have not yet managed to
>> do it.
>> Are you using 1.5 from CVS or from the rc1 tarball?
>> | I'm seeing a core dump in the t/protgraph test with perl 5.8.5 on |
>> FreeBSD 4.10-STABLE. The core dump is coming from |
>> Bio::Graph:::ProteinGraph, line 414, where Clone's clone method is
>> being | called. Since clone() is implemented in XS, I imagine some
>> kind of | pointer trouble is causing this problem.
>> | | Is anyone else seeing this problem? Its the only thing that stops
>> me | from having a 'green light' on my bioperl tests page. :(
>> | | Peter
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