[Bioperl-l] Core dump in t/protgraph on FreeBSD
Peter van Heusden
pvh at egenetics.com
Thu Nov 25 09:50:32 EST 2004
And now with a fresh compile of Clone-0.15 this problem goes away. All
bioperl tests are now ok on this version of FreeBSD (4-STABLE).
Peter van Heusden wrote:
> Aaron J. Mackey wrote:
>> Please use the CVS HEAD ...
> I've just reconfirmed - coredump on FreeBSD 4-STABLE with perl 5.8.5
> on protgraph.t, bioperl from clean checkout of CVS head.
>> Fernan Aguero wrote:
>>> +----[ Peter van Heusden <pvh at egenetics.com> (25.Nov.2004 07:03):
>>> | Hi
>>> Hi Peter!
>>> I've been trying to get some spare time to test the 1.5
>>> release candidates on FreeBSD, but have not yet managed to
>>> do it.
>>> Are you using 1.5 from CVS or from the rc1 tarball?
>>> | I'm seeing a core dump in the t/protgraph test with perl 5.8.5 on
>>> | FreeBSD 4.10-STABLE. The core dump is coming from |
>>> Bio::Graph:::ProteinGraph, line 414, where Clone's clone method is
>>> being | called. Since clone() is implemented in XS, I imagine some
>>> kind of | pointer trouble is causing this problem.
>>> | | Is anyone else seeing this problem? Its the only thing that
>>> stops me | from having a 'green light' on my bioperl tests page. :(
>>> | | Peter
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