[Bioperl-l] SearchIO and bl2seq blast reports

Bill Kenworthy billk at iinet.net.au
Mon Nov 29 20:04:11 EST 2004

Hi, what is the best way to detect strandedness using SearchIO parsing
bl2seq reports?  Or should I go back to BPLite which I think works.

There were bugs posted about this in the past, but SearchIO in 1.4 is
still returning 0 for frame and strand on both hit and query with any
form of bl2seq I have tried.


More information about the Bioperl-l mailing list