[Bioperl-l] Path to bl2seq

Marques Bonet tomas_marques at hotmail.com
Thu Oct 7 05:40:43 EDT 2004

I'm working withWindows 2000 and Bioperl 1.4. The problem is that my script 
is unable to find bl2seq.exe that I have in a certain directory.

I'm setting the environment variables BLASTDIR and PROGRAMDIR:
$ENV{PROGRAMDIR} = 'C://blast//';
$ENV{BLASTDIR} = 'C://blast//';

but this seems not work.

I'm also cheking the program_path() and program_dir and they are empty.

Any ideas?


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