[Bioperl-l] Re: Handling gff3 Target and Dbxref tags through FeatureIO

Scott Cain cain at cshl.org
Thu Oct 21 14:02:03 EDT 2004

On Thu, 2004-10-21 at 13:41, Scott Cain wrote:
> On Wed, 2004-10-20 at 18:47, Allen Day wrote:
> > Target tags - Bio::SeqFeature::Annotated needs to be able to have
> > Bio::LocatableSeq or Bio::Location::Simple attachments.  Presumably you
> > can have multiple targets.  Do something like create methods
> > add_location() and locations() methods.
> > 
> Is there a reason that you can think of that I should use
> Bio::LocatableSeq over Bio::Location::Simple, as the latter is probably
> more 'simple'.

Should Bio::SeqFeature::Annotated have a targets hash and add_ and
get_targets methods?  That seems like the right thing to do, but I am
not sure it fits with the design.


Scott Cain, Ph. D.                                         cain at cshl.org
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory

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