[Bioperl-l] Cont: load_ontology.pl crashes

Hilmar Lapp hlapp at gmx.net
Fri Oct 29 11:52:40 EDT 2004

On Friday, October 29, 2004, at 06:04  AM, Mikko Arvas wrote:

>> mysql 3.23.52
>> on a desktop (2.4Ghz, 756Mb). I got NCBI taxon database and a few 
>> genomes inside biosql.
> I got it working fine though on a machine with much less resources, 
> but which has a MySql 4.0.21 could that just be it?

That's the opposite of what I would have expected. 3.23.52 is 
border-line though for compatibility because earlier versions have a 
foreign-key bug. There might be another bug with memory management. As 
I said, the traditional interpro parser will consume on the order of a 
gigabyte or more memory for reading interpro in its entirety, at least 
according to what Juguang reported.


Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757

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