[Bioperl-l] TCoffee

Kwangbom Choi kchoi2 at unity.ncsu.edu
Sat Oct 30 01:33:09 EDT 2004

In my code, TCoffee is executed as shown below.

my $infile = shift;
my @params = ( 'out_lib' => "my.lib", ## I want to reuse the library data
 	       'output'  => 'msf' );
my $factory  = new Bio::Tools::Run::Alignment::TCoffee(@params);
my $tc_align = $factory->align($infile);

But it seems that the library file is not complete. It only contains the 
id, length, and the sequence itself. Is this a bug? Or do you see any 
mistake in my code snippet? Thank you in advance.

Kwangbom Choi

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