[Bioperl-l] IMAGE clones
Annie.Law at nrc-cnrc.gc.ca
Wed Sep 15 09:38:32 EDT 2004
I don't know if this is what you are looking for but there are files from
the image consortium
Ftp site. You can load the file into a table in your database and get the
info you want.
Here is the link. It should be in this directory but if it's not there it
will be in a directory near by.
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Sean Davis
Sent: Wednesday, September 15, 2004 6:51 AM
Subject: [Bioperl-l] IMAGE clones
Just a quick (not entirely bioperl-related) question...
I have a microarray design that is described in terms of IMAGE clones.
I am interested in getting the sequences for these clones. However, I
can't seem to find a resource for doing so directly (is there one?). I
do see that several genbank accessions can be associated with the same
IMAGE clone, so I could get all such genbanks associated with each
clone and use those as surrogates, ultimately for use in blast
analyses. How can I construct a query (or can I) that pulls these
genbanks by clone id, or is someone aware of a reliable mapping from
image clone to genbank accession?
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