[Bioperl-l] Writing embl entry to string

Brian Osborne brian_osborne at cognia.com
Fri Sep 17 08:07:52 EDT 2004


Yes, see question 2.4 in the FAQ (http://bioperl.org/Core/Latest/faq.html).

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of TAPO (Thomas
Agersten Poulsen)
Sent: Friday, September 17, 2004 7:59 AM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] Writing embl entry to string

Dear List,

        I am writing a small script to split embl-files into smaller file of
a given maximum file size.

To this end, I would like to get the output from Bio::SeqIO->write_seq into
a string (so I can evaluate length() on it). Would anybody out there know if
this is posible????

Best regards

Thomas A Poulsen        Research Scientist, PhD
Novozymes A/S           Protein Design / Bioinformatics
Brudelysvej 26, 1US.24  Phone: +45 44 42 27 23
DK-2880 Bagsværd.       Fax:   +45 44 98 02 46

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