[Bioperl-l] Refseq Ids

Jeremy Semeiks jrs at farviolet.com
Sun Sep 19 17:07:02 EDT 2004

On Sat, Sep 18, 2004 at 09:59:46AM +0200, Tomas Marques wrote:
> How can I obtain all RefSeq IDs from Rat genome? (using BioPerl, of
> course...)
> I'm using Bio::DB::RefSeq but I have not been able to locate any
> method(inherit or not)to do it...

Hi Tomas,

The most straightforward way to do this might be to download the rat
Refseq files directly. They're at


You should be able to use the Bioperl FASTA parser (part of the SeqIO
module) to parse these.


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