[Bioperl-l] Attention: upcoming BioPerl 1.5 developer's release
tex at biosysadmin.com
Thu Sep 30 22:00:08 EDT 2004
> Hey James - isn't this your module - you need to implement get_string()
> in ProtMatrix.
You're right, and I'm working on it. :) I just finished the implementation a
while ago, and I'm re-running "make test" right now. Sorry about that, I should
have mentioned this in my e-mail this morning.
I'm just ironing out a few more methods in ProtMatrix.pm. Should be finished by
the end of today.
Quick question - would it be more useful to everyone if I set the BIOPERLDEBUG
variable before I ran "make test"? If so, let me know and I'll re-run it and
e-mail results to the list.
> > t/Registry.t 255 65280 6 3 50.00% 5-6
> > t/RootStorable.t 2 512 34 56 164.71% 7-34
> > t/SeqIO.t 2 512 270 386 142.96% 78-270
> > t/SeqStats.t 28 9 32.14% 10-12 21-24 26 28
> fixed, needed to round
> > t/SimpleAlign.t 255 65280 61 16 26.23% 54-61
> > t/splicedseq.t 9 4 44.44% 3 5-6 9
> > 111 subtests skipped.
> > I have more detailed output if anyone wants it.
> > Cheers,
> > James
> > On Thu, 30 Sep 2004, Aaron J. Mackey wrote:
> >> With much-appreciated help from Steve Chervitz and Allen Day, there's
> >> about to be a real push towards a 1.5 developer's release; as such, I
> >> highly encourage all module authors/maintainers to get in those
> >> documentation updates and finish any functionalities you've only
> >> "stubbed" in place. I'm not yet declaring a freeze, but don't be
> >> surprised if I do so soon ...
> >> I have a pretty good idea of the new things that have gone in since
> >> 1.4, but it wouldn't hurt you to drop me a private line about any
> >> significant new functionality, changed API or bug fixes you've done
> >> since the 1.4 releases. You should also check the AUTHORS file and
> >> make sure your contact and attribution information is listed as you so
> >> desire.
> >> Now is also the time for you with "odd" systems (for me that means
> >> Sun,
> >> SGI, and any Windows) to give the bioperl-live CVS checkout a full
> >> make
> >> test, and to post your results (preferably only the stuff that didn't
> >> work). If you can provide a patch, even better!
> >> I hope to have a release candidate available by the end of next week,
> >> with the real thing following very shortly thereafter (unless there
> >> are
> >> show-stoppers, of course)
> >> Thanks,
> >> -Aaron
> >> --
> >> Aaron J. Mackey, Ph.D.
> >> Dept. of Biology, Goddard 212
> >> University of Pennsylvania email: amackey at pcbi.upenn.edu
> >> 415 S. University Avenue office: 215-898-1205
> >> Philadelphia, PA 19104-6017 fax: 215-746-6697
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> Jason Stajich
> jason.stajich at duke.edu
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