[Bioperl-l] pubmed

Hilmar Lapp hlapp at gmx.net
Fri Apr 1 04:10:07 EST 2005

*please* people always post the code or ideally a small snippet that 
demonstrates what you were trying to do, and post the result and if 
it's not an exception why it is not the result you expected. DO NOT 
just say 'blah doesn't work for me'. Whenever someone needs to guess 
what you probably did and what you probably mean you are wasting other 
people's time.

The GI# you have has multiple refs with one having a pubmed ID and none 
having a medline ID. So, the one ref that has a pubmed ID should return 
it from $ref->pubmed() but without any code snippet it is impossible to 
tell what you actually did and what therefore might be the problem.


On Thursday, March 31, 2005, at 03:15  PM, Qunfeng wrote:

> Hi there,
> http://bioperl.org/HOWTOs/Feature-Annotation/anno_from_genbank.html
> I am not very familiar with BioPerl. I tried to follow the example 
> showing in the above page to retrieve pubmed ID under each Reference 
> tag , i.e., $value->pubmed(), but it doesn't work for me for the seq 
> gi#56961711. The authors() works for me.  Appreciate any suggestions.
> Qunfeng
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757

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