[Bioperl-l] Export a list of genes containing this family

Paulo Almeida palmeida at igc.gulbenkian.pt
Fri Apr 1 05:12:23 EST 2005


This is not an ideal solution, and may not work for all your families,
but if you click 'Go', in the Export Data box, you get a multiple
alignment of the proteins, which includes their names. You could feed
that list to Ensmart to get the gene names.


On Fri, Apr 01, 2005 at 11:46:20AM +0200, Irshad Khan wrote:
> Hi,
> I am working on zebra fish gene families in Ensembl and clicking on
> Export a list of genes containing this family takes me to MartView
> with "No datasets".
> eg.
> http://www.ensembl.org/Danio_rerio/familyview?family=ENSF00000002914
> I have to extract members of large number of gene families or is there
> any module which I can use.
> Any help????
> Irshad

Paulo Almeida
Instituto Gulbenkian de Ciencia
Apartado 14, 2781-901, Oeiras, PORTUGAL
tel  +351 21 446 46 35
fax  +351 21 440 79 70

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