[Bioperl-l] obtaining nt seqs using protein GI's

Nathan Spencer Haigh nathanhaigh at ukonline.co.uk
Fri Apr 8 11:43:40 EDT 2005

This must have been done a million times, but i haven't got time at the moment
to find out the answer myself.

I have a list of GI's for which i would like to obtain the nucleotide sequences
(including introns); can anyone give me some pointers?

What i'm trying to do is this: i've used blastclust on ~5000 protein sequences
to identify those with high sequence identity at the aa level, now i would like
to create an alignment of the same sequences using nt and if possible include
introns to try and identify any sequence variations.


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