[Bioperl-l] Re: Entrez gene parser code
skirov at utk.edu
Tue Apr 12 12:43:53 EDT 2005
When you need to ask bioperl question please send it to the list.
You can get the parser by installing bioperl-live:
The example below shows how to login to the bioperl repository. To login
to other repositories simply alter the /home/repository/(project)
*cvs -d :pserver:cvs at cvs.open-bio.org:/home/repository/bioperl login*
/when prompted, the password is 'cvs'/
(4) Each project CVS repository can have many different packages
available for download. You may need to browse the web interface for a
bit to determine the packages of interest. After a successful login you
may "checkout" the project package you are interested in.
The following command should be executed as one line. The specific
example shows how to check out the primary bioperl codebase which is
contained in the "*bioperl-live*" package.
* cvs -d :pserver:cvs at cvs.open-bio.org:/home/repository/bioperl checkout
then perl Makefile.PL and finally make install
In order for this parser to work you need to get GI::Parser::Entrezgene
from sourceforge. You can get the address for this module from the perl
doc of entrezgene: perldoc Bio::SeqIO::entrezgene
*Colin Erdman wrote:
> I was just curious where the latest version of your bioperl entrez
> gene parser code might be found?
> Colin Erdman
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