[Bioperl-l] Re: Entrez gene parser code

Brian Osborne brian_osborne at cognia.com
Wed Apr 13 13:56:03 EDT 2005


If you'd like a command-line environment like some sort of Unix install
Cygwin (www.cygwin.com). No need to install everything, just click the
"View" button in the main installation window and select and install the
minimum, something like gcc, binutils, cvs, openssh, make, Perl.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Colin Erdman
Sent: Tuesday, April 12, 2005 2:23 PM
To: 'Mingyi Liu'; 'Stefan Kirov'
Cc: 'Bioperl list'
Subject: RE: [Bioperl-l] Re: Entrez gene parser code

I am between Linux installs right now and actually running win32 with the
ActiveState Perl install... How does one add the cvs.open-bio.org repository
to the PPM console list to search through it and install the bioperl-live
packages etc? I don't see a comparable cvs command within it.

This is all new to me and I appreciate the help!

-----Original Message-----
From: Mingyi Liu [mailto:mingyi.liu at gpc-biotech.com]
Sent: Tuesday, April 12, 2005 10:56 AM
To: Stefan Kirov
Cc: Colin Erdman; Bioperl list
Subject: Re: [Bioperl-l] Re: Entrez gene parser code

Stefan Kirov wrote:

> In order for this parser to work you need to get
> GI::Parser::Entrezgene from sourceforge. You can get the address for
> this module from the perl doc of entrezgene: perldoc
> Bio::SeqIO::entrezgene
> Stefan
I just want to add that I will be adding GI::Parser::EntrezGene to cpan
in a few days, and most likely the name space will switch to Bio::ASN1
(therefore it'd be Bio::ASN1::EntrezGene) based on PAUSE admin suggestion.



Bioperl-l mailing list
Bioperl-l at portal.open-bio.org

More information about the Bioperl-l mailing list