[Bioperl-l] Error in bp_genbank2gff3 error

Michael Cipriano mcipriano at mbl.edu
Fri Apr 15 13:45:47 EDT 2005

Not sure if this was fixed yet, but it is broken in my version

#$Id: genbank2gff3.PLS,v 1.5 2005/01/17 19:48:57 cjm Exp $;
Line 248

            $fa_outfile =~ s/gff/fa/;

if the string "gff" is in your --outfile, this creates problems
It should be changed to

            $fa_outfile =~ s/gff$/fa/;

-Michael Cipriano

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