[Bioperl-l] Trouble with fetching a sequence from indexed fasta file

Crabtree, Jonathan crabtree at tigr.org
Thu Apr 28 09:24:12 EDT 2005

Hi Oliver-

> fetch($id) with fetch ('orf19.1168.prot_[A.aaa]').  Could 

Your Perl code (see below) says "A_aaa", not "A.aaa", which would
explain the discrepancy (unless the "A.aaa" was a typo in your e-mail):

> $id = 'orf19.1168.prot_[A_aaa]';

If this is the case then perhaps there was a similar typo/error in your
original array of ids, @idlist?


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