[Bioperl-l] Not picking up Dbxrefs EMBL records

SG Edwards s0460205 at sms.ed.ac.uk
Mon Aug 8 04:17:51 EDT 2005

Hi folks,

I have a BioSQL database (PostgreSQL 7.4.3, BioPerl 1.4, bioperl-db 1.2) set up
containing protein and gene data. However, when I load gene sequence records
(EMBL or Genbank) using:

perl load_seqdatabase.pl -driver Pg -safe -lookup -dbname milk -dbuser s0460205
-dbpass password -format embl /home/s0460205/file_name.txt

from bioperl-db it does not pick up any dbxrefs i.e. there is no dbxref_id for

Has anyone else come across this rpoblem and is ther a fix?



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