[Bioperl-l] new modules for sarching for patterns in fasta-files

markus.riester at student.uni-tuebingen.de markus.riester at student.uni-tuebingen.de
Mon Aug 8 13:12:36 EDT 2005


I've made some modules for searching for patterns in fasta files with
different (really fast) backends like agrep and vmatch.  I don't think you
want to include this in standard bioperl. But we think it is useful code and
we'd like to share it on cpan. The main reason for this email is a discussion
about the right namespace for this module. What do you think? 


(hope the attachment reaches the mailinglist, if not, please send me a mail if
you are interested in this code)

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