[Bioperl-l] calculating the Ka/Ks ratio

Csaba Ortutay csaba.ortutay at uta.fi
Wed Aug 10 04:37:50 EDT 2005

> Is there a module that will take a pair of aligned (coding) sequences, and
> report the Ka/Ks ratio? (non-synonymous mutations per non-synonymous site /
> synonymous mutations per synonymous site).

See the Bio::Align::DNAStatistics module.

That's working nicely.


Csaba Ortutay PhD
Institute of Medical Technology
University of Tampere
e-mail: csaba.ortutay at uta.fi

More information about the Bioperl-l mailing list