[Bioperl-l] Problems using Bio::Ext::Align and Bio::SeqIO::staden::read

Bryan Yi b_corbomite at hotmail.com
Wed Aug 17 22:58:21 EDT 2005

I was attempting to do pairwise alignments for 2 DNA sequences so I tried to 
use the Align module and when I ran into problems such as not having all the 
.h files I was able to solve the problems by reading the mailing list 
archives and even got the newest version for dpAlign.pm form CVS. However, 
I'm now getting this problem.

Had problems bootstrapping Inline module 'Bio::SeqIO::staden::read'

Can't load 
for module Bio::SeqIO::staden::read: 
undefined symbol: deflateInit2_ at 
/usr/lib/perl5/5.8.6/i586-linux-thread-multi/DynaLoader.pm line 230, <DATA> 
line 1.
at /usr/lib/perl5/site_perl/5.8.6/Inline.pm line 500

at aligntest.pl line 0
INIT failed--call queue aborted, <DATA> line 1.

I'm sure that everything is in their place and I even installed the 
Bio::SeqIO::staden::read module personally, Can anybody help me with this 
problem? Also, is there another way to code a script that does  pairwise 
alignments without having to code everything from scratch?

More information about the Bioperl-l mailing list