[Bioperl-l] Problems using Bio::Ext::Align and
b_corbomite at hotmail.com
Wed Aug 17 22:58:21 EDT 2005
I was attempting to do pairwise alignments for 2 DNA sequences so I tried to
use the Align module and when I ran into problems such as not having all the
.h files I was able to solve the problems by reading the mailing list
archives and even got the newest version for dpAlign.pm form CVS. However,
I'm now getting this problem.
Had problems bootstrapping Inline module 'Bio::SeqIO::staden::read'
for module Bio::SeqIO::staden::read:
undefined symbol: deflateInit2_ at
/usr/lib/perl5/5.8.6/i586-linux-thread-multi/DynaLoader.pm line 230, <DATA>
at /usr/lib/perl5/site_perl/5.8.6/Inline.pm line 500
at aligntest.pl line 0
INIT failed--call queue aborted, <DATA> line 1.
I'm sure that everything is in their place and I even installed the
Bio::SeqIO::staden::read module personally, Can anybody help me with this
problem? Also, is there another way to code a script that does pairwise
alignments without having to code everything from scratch?
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