[Bioperl-l] Extract fields from Medline

Brian Osborne osborne1 at optonline.net
Wed Dec 7 09:06:09 EST 2005


For a start take a look at the scripts in examples/biblio, these scripts
show how one can access an OpenBQS service ("soap") or PubMed ("eutils")
using Bio::Biblio.

Brian O.

On 12/7/05 7:42 AM, "Andrej Kastrin" <andrej.kastrin at siol.net> wrote:

> Hello all,
> big problem for me, small for you (while I'm noob in perl). I have a
> list of terms (i.e. genes, gene products) in row data format. Now I have
> to parse Medline (standard Medline format) and extract PMID, TI and AB
> (ID number, Title and Abstract) fields which involve any term in my term
> list. I already transform Medline "multiline" format to "single" line,
> so there is only one line per each field.
> How to start? Thanks for any suggesstion.
> Best, Andrej
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