[Bioperl-l] the Parameter GAPCOSTS for the remoteblast Modul
hubert.prielinger at gmx.at
Tue Dec 6 17:47:18 EST 2005
I have tried to set the GAPCOSTS Parameter:
'GAPCOSTS' = '9 i1' ...... it wasn't working, but if I took float
instead of integer the gap existence will work but not the Gap extend,
like 'GAPCOSTS' = '9.0 i1.0'
It never minds, if I take 'GAPCOSTS' = '9.0 i1.0' or 'GAPCOSTS' = '9.0
i-1.0' or instead of 1.0 any other float value, I always get the same
Gap existence and extension values of 10 and 0 not supported for
BLOSUM80 (for example)
it always sets the extension Value to 0.
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