hlapp at gmx.net
Sat Dec 10 22:22:48 EST 2005
Angshu, somebody else pointed out already that you really need to take
a look at the documentation. This wasn't a joke - I can only recommend
you take that advice pretty literally or soon you'll find yourself
posting questions and being ignored.
You're not the first newbie ever to hit bioperl or bioperl-db, and
you're not the first one either to face the problems you're facing -
that's why we have INSTALL documents and FAQs and such. They were
written exactly for newbie people like you - not for me or Barry or
Jason - so that most newbie questions DO NOT have to be addressed over
the mailing list.
People responding to you do so in their spare time out of very busy
lives. If you don't read documentation you're essentially saying that
you don't respect other people's time, because you're happily wasting
that time for questions you could have easily answered yourself had you
bothered to read the documentation, instead of using people's time to
assist with problems which are NOT readily addressed in the
documentation. If you don't respect somebody's time, why should people
think you respect them themselves?
I recommend you think about that next time you're going to hit the
keyboard as soon as something doesn't work as expected.
On Dec 9, 2005, at 4:54 PM, Angshu Kar wrote:
> One thing I missed was that my Root.pm resides in a different
> path...How to
> specify that?
> On 12/9/05, Angshu Kar <angshu96 at gmail.com> wrote:
>> Thanks a lot Barry.
>> Now I'm getting this error while tryin to run the load_seqdatabase.pl
>> in a
>> linux box (I used :
>> perl load_seqdatabase.pl /akar/seq/ATH1_cds_cm_20040228)
>> Can't locate Bio/Root/Root.pm in @INC (@INC contains:
>> /usr/lib/perl5/5.8.5/i386-linux-thread-multi /usr/lib/perl5/5.8.5
>> /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4
>> /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2
>> /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0
>> /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4
>> /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2
>> /usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0
>> /usr/lib/perl5/vendor_perl .) at load_seqdatabase.pl line 7.
>> BEGIN failed--compilation aborted at load_seqdatabase.pl line 7.
>> Please guide.
>> On 12/9/05, Barry Moore < bmoore at genetics.utah.edu> wrote:
>>> Make the namespace whatever you want it to be. This is useful if you
>>> want to load sequence from different sources into the same database.
>>> for the format - you tell us what format is the file in? You could
>>> let bioperl guess, but looking at the file and deciding yourself
>>> be your best bet.
>>>> -----Original Message-----
>>>> From: bioperl-l-bounces at portal.open-bio.org [mailto: bioperl-l-
>>>> bounces at portal.open-bio.org] On Behalf Of Angshu Kar
>>>> Sent: Friday, December 09, 2005 5:22 PM
>>>> To: Sean Davis
>>>> Cc: bioperl-l
>>>> Subject: Re: [Bioperl-l] loading data to biosql tables
>>>> Hi Sean,
>>>> A small help I need before I run the load_seqdatabase.pl. I've
>>>> datafile which is ATH1_cds_cm_20040228 from TAIR. What's the
>>>> format for this?
>>>> Bioperl-l mailing list
>>>> Bioperl-l at portal.open-bio.org
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
Hilmar Lapp email: lapp at gnf.org
GNF, San Diego, Ca. 92121 phone: +1-858-812-1757
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