angshu96 at gmail.com
Sat Dec 10 22:30:08 EST 2005
I'm extremely apologetic about the inconvenience caused by me to you and
Actually I was getting more gulping and greedy by each of the ready and
easily comprehensive answers that you bright people were posting.
Thanks for pointing out. I really feel self-accusing.
I'm sorry Hilmar. This wouldn't be repeated in future.
On 12/10/05, Hilmar Lapp <hlapp at gmx.net> wrote:
> Angshu, somebody else pointed out already that you really need to take
> a look at the documentation. This wasn't a joke - I can only recommend
> you take that advice pretty literally or soon you'll find yourself
> posting questions and being ignored.
> You're not the first newbie ever to hit bioperl or bioperl-db, and
> you're not the first one either to face the problems you're facing -
> that's why we have INSTALL documents and FAQs and such. They were
> written exactly for newbie people like you - not for me or Barry or
> Jason - so that most newbie questions DO NOT have to be addressed over
> the mailing list.
> People responding to you do so in their spare time out of very busy
> lives. If you don't read documentation you're essentially saying that
> you don't respect other people's time, because you're happily wasting
> that time for questions you could have easily answered yourself had you
> bothered to read the documentation, instead of using people's time to
> assist with problems which are NOT readily addressed in the
> documentation. If you don't respect somebody's time, why should people
> think you respect them themselves?
> I recommend you think about that next time you're going to hit the
> keyboard as soon as something doesn't work as expected.
> On Dec 9, 2005, at 4:54 PM, Angshu Kar wrote:
> > One thing I missed was that my Root.pm resides in a different
> > path...How to
> > specify that?
> > On 12/9/05, Angshu Kar <angshu96 at gmail.com> wrote:
> >> Thanks a lot Barry.
> >> Now I'm getting this error while tryin to run the load_seqdatabase.pl
> >> in a
> >> linux box (I used :
> >> perl load_seqdatabase.pl /akar/seq/ATH1_cds_cm_20040228)
> >> Can't locate Bio/Root/Root.pm in @INC (@INC contains:
> >> /usr/lib/perl5/5.8.5/i386-linux-thread-multi /usr/lib/perl5/5.8.5
> >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi
> >> /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi
> >> /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi
> >> /usr/lib/perl5/site_perl/5.8.2/i386-linux-thread-multi
> >> /usr/lib/perl5/site_perl/5.8.1/i386-linux-thread-multi
> >> /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
> >> /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4
> >> /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2
> >> /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0
> >> /usr/lib/perl5/site_perl
> >> /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi
> >> /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi
> >> /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi
> >> /usr/lib/perl5/vendor_perl/5.8.2/i386-linux-thread-multi
> >> /usr/lib/perl5/vendor_perl/5.8.1/i386-linux-thread-multi
> >> /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
> >> /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4
> >> /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2
> >> /usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0
> >> /usr/lib/perl5/vendor_perl .) at load_seqdatabase.pl line 7.
> >> BEGIN failed--compilation aborted at load_seqdatabase.pl line 7.
> >> Please guide.
> >> Thanks,
> >> Angshu
> >> On 12/9/05, Barry Moore < bmoore at genetics.utah.edu> wrote:
> >>> Angshu-
> >>> Make the namespace whatever you want it to be. This is useful if you
> >>> want to load sequence from different sources into the same database.
> >>> As
> >>> for the format - you tell us what format is the file in? You could
> >>> just
> >>> let bioperl guess, but looking at the file and deciding yourself
> >>> would
> >>> be your best bet.
> >>> Barry
> >>>> -----Original Message-----
> >>>> From: bioperl-l-bounces at portal.open-bio.org [mailto: bioperl-l-
> >>>> bounces at portal.open-bio.org] On Behalf Of Angshu Kar
> >>>> Sent: Friday, December 09, 2005 5:22 PM
> >>>> To: Sean Davis
> >>>> Cc: bioperl-l
> >>>> Subject: Re: [Bioperl-l] loading data to biosql tables
> >>>> Hi Sean,
> >>>> A small help I need before I run the load_seqdatabase.pl. I've
> >>> downloaded
> >>>> my
> >>>> datafile which is ATH1_cds_cm_20040228 from TAIR. What's the
> >>>> namespace
> >>> and
> >>>> format for this?
> >>>> Thanks,
> >>>> Angshu
> >>>> _______________________________________________
> >>>> Bioperl-l mailing list
> >>>> Bioperl-l at portal.open-bio.org
> >>>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> Hilmar Lapp email: lapp at gnf.org
> GNF, San Diego, Ca. 92121 phone: +1-858-812-1757
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