[Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...

Marc Logghe Marc.Logghe at DEVGEN.com
Tue Dec 13 03:09:54 EST 2005


> -----Original Message-----
> From: bioperl-l-bounces at portal.open-bio.org 
> [mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Angshu Kar
> Sent: Tuesday, December 13, 2005 2:57 AM
> To: bioperl-l
> Subject: [Bioperl-l] urgent:load_seqdatabase.pl doesn't seem 
> to like fasta...
> Hi,
> This is the format that I've :
> >At1g01010.1 68414.m00001 no apical meristem (NAM) family protein 
> >contains
> Pfam PF02365: No apical meristem (NAM) domain; sim ilar to 
> NAC domain protein NAM GB: AAD17313 GI:4325282 from 
> [Arabidopsis thaliana]
> And with regard to the following discussion:
> http://bioperl.org/pipermail/bioperl-l/2004-June/016198.html
> Could anyone please let me know whether any fixes have been 
> done for this?

Did you transfer the display_id to the accession_number slot ? See
recent discussions at
and links inside.

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