[Bioperl-l] blast doesn't work
torsten.seemann at infotech.monash.edu.au
Wed Dec 21 05:25:46 EST 2005
> futhermore perl bptutorial.pl 23 returns:
> Beginning run_standaloneblast example...
> blastall program not found. Skipping StandAloneBlast example
> I have tried to install it all again (Bundle + Bioperl) manually and set the enviroment variable like:
> export BLASTDIR=/usr/local/blast
Does your BLASTDIR actually contain the 'blastall' binary?
In my installation I have to do:
Also, to run test 23 in bptutorial you have to run it from a directory
with a ./t/data/ subdirectory. This is in CVS bioperl-live and the
orginal tar.gz distribution.
Victorian Bioinformatics Consortium, Monash University, Australia
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