[Bioperl-l] retrieve entry name using searchIO

Brian Osborne osborne1 at optonline.net
Sun Dec 25 15:07:22 EST 2005


It sounds like you want Hit's description() method. See the
Feature-Annotation HOWTO:


Brian O.

On 12/25/05 6:36 AM, "Anders Stegmann" <anst at kvl.dk> wrote:

> Marry christmas BioPerl!
> By using SearchIO I can retrieve the number of entries in my database file,
> but can I also retrieve each entry's header/identifier?
> The thing is that I have a file containing a whole genome.That is, all
> chromosomes are gathered in one file. I would like to know which chromosome my
> query seq is hitting with when I am blasting.
> Regards Anders.
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