From awitney at sghms.ac.uk Tue Feb 1 07:38:43 2005 From: awitney at sghms.ac.uk (Adam Witney) Date: Tue Feb 1 07:38:10 2005 Subject: [Bioperl-l] Parseing tRNA sequences out of genbank file Message-ID: Hi, I am parsing a genbank file and it contains an entry like so... tRNA complement(1326335..1326419) /product="transfer RNA-Leu" /gene="tRNA-Leu" /anticodon="(pos:1326383..1326385,aa:Leu)" /note="tRNA Leu anticodon CAA, Cove score 51.10" However this code ... if($feat->primary_tag eq 'tRNA') { my $seq_obj = $feat->seq; my $gene_length = length($seq_obj->seq); ... I get this error ------------- EXCEPTION ------------- MSG: Sequence is a protein. Cannot revcom STACK Bio::PrimarySeqI::revcom /usr/local/lib/perl5/site_perl/5.8.4/Bio/PrimarySeqI.pm:378 STACK Bio::SeqFeature::Generic::seq /usr/local/lib/perl5/site_perl/5.8.4/Bio/SeqFeature/Generic.pm:613 STACK toplevel ../../1.0b1/sql/scripts/gene_upload.pl:379 -------------------------------------- I am trying to get the DNA sequence corresponding to the tRNA, why does it think it is a protein sequence? It works fine for tRNA's which aren't on the reverse strand Thanks for any help Adam -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. From subhadrar at cytogenomic.com Tue Feb 1 01:05:20 2005 From: subhadrar at cytogenomic.com (subhadra vedula) Date: Tue Feb 1 10:19:51 2005 Subject: [Bioperl-l] volunteers needed for Bioperl Message-ID: <20050201060520.87857.qmail@web205.biz.mail.re2.yahoo.com> Dear Bioperl team We are a group of biologists/biochemists with experience in Bioinformatics operating out of India. We are interested in extending our services to interested groups. Could you please let us know as to which specific aspect in which you would require some help? Then I can talk to my team and let you know. Also please let me know the terms and conditions that may apply for such an activity. Please get back at your earliest convenience. Thanks and regards Subhadra From brian_osborne at cognia.com Tue Feb 1 10:52:46 2005 From: brian_osborne at cognia.com (Brian Osborne) Date: Tue Feb 1 10:48:29 2005 Subject: [Bioperl-l] volunteers needed for Bioperl In-Reply-To: <20050201060520.87857.qmail@web205.biz.mail.re2.yahoo.com> Message-ID: Subhadra, Your wish to assist is much apprciated. This list occasionally gets messages like yours, offers to help. What's odd is that these offer letters frequently go unanswered! There are a few reasons for this, one reason is that there are many different things one could do, so where to start? Another reason is that people usually work on matters of personal interest, so the question might be "what are you interested in working on?". Finally, remember that there are no terms and conditions or applications, this is a volunteer open source effort where scientists and programmers have worked to create something useful for themselves and for others. Would you like to work on the test suite? We need that. Would you like to fix bugs? There are a fair number of these. Would you like to work on documentation? There are certainly things to do in that area as well, and writing forces one to learn the material. Brian O. -----Original Message----- From: bioperl-l-bounces@portal.open-bio.org [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of subhadra vedula Sent: Tuesday, February 01, 2005 1:05 AM To: bioperl-l@bioperl.org Subject: [Bioperl-l] volunteers needed for Bioperl Dear Bioperl team We are a group of biologists/biochemists with experience in Bioinformatics operating out of India. We are interested in extending our services to interested groups. Could you please let us know as to which specific aspect in which you would require some help? Then I can talk to my team and let you know. Also please let me know the terms and conditions that may apply for such an activity. Please get back at your earliest convenience. Thanks and regards Subhadra _______________________________________________ Bioperl-l mailing list Bioperl-l@portal.open-bio.org http://portal.open-bio.org/mailman/listinfo/bioperl-l From jason.stajich at duke.edu Tue Feb 1 11:23:13 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Tue Feb 1 11:20:04 2005 Subject: [Bioperl-l] Parseing tRNA sequences out of genbank file In-Reply-To: References: Message-ID: <52b47738c72a175a7d82682b659b20f9@duke.edu> Very weird - one would probably need to see the genbank file to figure out what is going on. A quick fix would be to force the sequence to dna first: $seq->alphabet('dna'); It would be interesting to figure out why the alphabet is being guessed as not DNA though. -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 1, 2005, at 7:38 AM, Adam Witney wrote: > > Hi, > > I am parsing a genbank file and it contains an entry like so... > > tRNA complement(1326335..1326419) > /product="transfer RNA-Leu" > /gene="tRNA-Leu" > /anticodon="(pos:1326383..1326385,aa:Leu)" > /note="tRNA Leu anticodon CAA, Cove score 51.10" > > > However this code > > ... > if($feat->primary_tag eq 'tRNA') > { > my $seq_obj = $feat->seq; > my $gene_length = length($seq_obj->seq); > > ... > > I get this error > > ------------- EXCEPTION ------------- > MSG: Sequence is a protein. Cannot revcom > STACK Bio::PrimarySeqI::revcom > /usr/local/lib/perl5/site_perl/5.8.4/Bio/PrimarySeqI.pm:378 > STACK Bio::SeqFeature::Generic::seq > /usr/local/lib/perl5/site_perl/5.8.4/Bio/SeqFeature/Generic.pm:613 > STACK toplevel ../../1.0b1/sql/scripts/gene_upload.pl:379 > > -------------------------------------- > > I am trying to get the DNA sequence corresponding to the tRNA, why > does it > think it is a protein sequence? It works fine for tRNA's which aren't > on the > reverse strand > > Thanks for any help > > Adam > > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From awitney at sghms.ac.uk Tue Feb 1 11:26:21 2005 From: awitney at sghms.ac.uk (Adam Witney) Date: Tue Feb 1 11:25:47 2005 Subject: [Bioperl-l] Parseing tRNA sequences out of genbank file In-Reply-To: <52b47738c72a175a7d82682b659b20f9@duke.edu> Message-ID: Hi Jason, I have just discovered the problem, it was in the header, my original header looked like this: LOCUS unknown id 4290252 bp dna linear UNK And everything is treated as protein. But changing to this LOCUS unknown 4290252 bp dna linear UNK Fixes it.... So I guess you can't have any spaces in Locus names? Cheers Adam > Very weird - one would probably need to see the genbank file to figure > out what is going on. > > A quick fix would be to force the sequence to dna first: > $seq->alphabet('dna'); > > It would be interesting to figure out why the alphabet is being guessed > as not DNA though. > > -jason > > > -- > Jason Stajich > jason.stajich at duke.edu > http://www.duke.edu/~jes12/ > > On Feb 1, 2005, at 7:38 AM, Adam Witney wrote: > >> >> Hi, >> >> I am parsing a genbank file and it contains an entry like so... >> >> tRNA complement(1326335..1326419) >> /product="transfer RNA-Leu" >> /gene="tRNA-Leu" >> /anticodon="(pos:1326383..1326385,aa:Leu)" >> /note="tRNA Leu anticodon CAA, Cove score 51.10" >> >> >> However this code >> >> ... >> if($feat->primary_tag eq 'tRNA') >> { >> my $seq_obj = $feat->seq; >> my $gene_length = length($seq_obj->seq); >> >> ... >> >> I get this error >> >> ------------- EXCEPTION ------------- >> MSG: Sequence is a protein. Cannot revcom >> STACK Bio::PrimarySeqI::revcom >> /usr/local/lib/perl5/site_perl/5.8.4/Bio/PrimarySeqI.pm:378 >> STACK Bio::SeqFeature::Generic::seq >> /usr/local/lib/perl5/site_perl/5.8.4/Bio/SeqFeature/Generic.pm:613 >> STACK toplevel ../../1.0b1/sql/scripts/gene_upload.pl:379 >> >> -------------------------------------- >> >> I am trying to get the DNA sequence corresponding to the tRNA, why >> does it >> think it is a protein sequence? It works fine for tRNA's which aren't >> on the >> reverse strand >> >> Thanks for any help >> >> Adam >> >> >> -- >> This message has been scanned for viruses and >> dangerous content by MailScanner, and is >> believed to be clean. >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> > -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. From hlapp at gmx.net Tue Feb 1 11:42:12 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Tue Feb 1 11:37:56 2005 Subject: [Bioperl-l] Parseing tRNA sequences out of genbank file In-Reply-To: Message-ID: <39214C04-7470-11D9-B46F-000A959EB4C4@gmx.net> On Tuesday, February 1, 2005, at 08:26 AM, Adam Witney wrote: > So I guess you can't have any spaces in Locus names? No, you should not. NCBI once had in a few and agreed to fix it. -hilmar -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From Marc.Logghe at devgen.com Wed Feb 2 05:52:44 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Wed Feb 2 05:48:55 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying Message-ID: Allright, status update about my little 'gbrowse on top of biosql'-project. I have prepared a fresh linux box with bioperl-live tagged bioperl-release-1-5-0, bioperl-db and bioperl-schema HEAD, release_1_62-bugfixes Generic-Genome-Browser. I loaded some genbank proteins in biosql (Thanks Hilmar for helping me out !) and adapted 06.biosql.conf. Three observations that at this (early) point can be made: 1) init_code (providing some missing methods in order to make Bio::SeqFeature::Generic and Bio::Graphics::Feature more compliant) is not needed anymore, which is good (Thanks Lincoln) 2) all features are displayed in duplicate (I'll flesh that one out). This confirms the things Genevieve is seeing. 3) Bio::SeqFeature::Generic::get_tag_values does not exist anymore: Bio::SeqFeature::Geneneric does not inherit from Bio::AnnotatableI which implements that method, which is bad (can it pass the tests, then ?). I don't know what the situation is in bioperl-live HEAD. Cheers, Marc > -----Original Message----- > From: gmod-gbrowse-admin@lists.sourceforge.net > [mailto:gmod-gbrowse-admin@lists.sourceforge.net]On Behalf Of > Genevieve > DeClerck > Sent: Tuesday, February 01, 2005 10:57 PM > To: gmod-gbrowse@lists.sourceforge.net > Cc: Lincoln Stein > Subject: Re: [Gmod-gbrowse] features not displaying > > > > I've been playing around with the NC_004578.gbk (P.syringae DC3000 > chromosome) file I got from ncbi that I've been trying to > display in a > biosql/gbrowse setup -- I got some of the data to > partically display.. > > I found that if I remove the whole genome sequence (ORIGIN record) at > the end of NC_004578.gbk so that just the feature records remain, and > load this into a fresh biosql db, CDS's display in GBrowse. But there > are a couple of problems with what's displayed: > > 1) no features with a stop coordinate > 500,000 are shown, so > for DC3000 > only about a 1/6 of the genome features are shown; > > 2) all the CDS features are duplicated.. there are two > colored bars for > each CDS. When you mouse over dulpicate bars they both > display something > like: "CDS: :813..1916". I thought this might have something > to do with > the fact that in the gbk file, most if not all of the CDS > records have > corresponding 'gene' records with the same exact coordinates, but the > Genes have their own duplication problem... the gene records also > display in duplicate ... mousing over the gene glyphs in the > same region > as the CDS above shows this: "Gene: :813..1916". > > Another test I performed with the NC_004578.gbk file is that > I severely > truncated the whole genome sequence at the end of the file.. removing > all sequence after the '7141' line. And I removed all features in the > file that had a coord > 7000. This left 4 CDSs and 4 genes. The file > loads fine and displays all 4 features.. in duplicate. So > when selecting > the Landmark, "NC_004578:1..7200", all features are visible.. > 16 glyphs > total due to duplication. > > The web log is not showing any errors of note.. > > -Genevieve > > > > Lincoln Stein wrote: > > > Sounds like Simon and I will have to work through this. > Probably the > > display_name needs to get set more broadly. > > > > Lincoln > > > > On Friday 28 January 2005 07:30 pm, Hilmar Lapp wrote: > > > >>I haven't had a chance yet to look at this in the code so I am and > >>probably sound a bit confused. In order to display something in > >>gbrowse wouldn't you need coordinates? > >> > >>If what the code does is to fetch sequences, then they don't have > >>coordinates - only their feature(s) do/does (which are > >>auto-retrieved along with the seqs). This means that you'd have to > >>have loaded the database with sequence entries whose feature table > >>gives the coordinates of the *sequence*. Usually the feature table > >>will give the coordinates of the features on the sequence, no? > >>(unless it's a remote location) > >> > >>Assuming in your question you mean retrieving features by name, the > >>naive answer is similar to how you do this for seq by accession, > >>except you ask for the SeqFeatureI adaptor, provide a SeqFeatureI > >>factory, specify SeqFeatureI in the collections, and constrain by > >>the display_name property of the SeqFeatureI entity. > >> > >>However, this probably won't work for most dataload situations > >>because bioperl doesn't set the display_name property in any of its > >>rich format parsers. The corresponding column is optional in > >>biosql, so there's no error or warning from that. > >> > >>So, if your name or identifier to search by is the value of a > >>feature tag, technically it will be in the value column of the > >>seqfeature_qualifier_value table unless you massaged the data > >>structure prior to upload. You then need to set up a BioQuery with > >>SeqFeatureI and Bio::Annotation::SimpleValue as entities to be > >>joined, and constrain by value of the latter. This may mean nothing > >>to most, but I hope Simon has some idea on what I'm talking about. > >> > >> -hilmar > >> > >>On Jan 28, 2005, at 12:14 PM, Lincoln Stein wrote: > >> > >>>There's a central call in the gbrowse/biosql adaptor called > >>>get_feature_by_name() that calls > >>>biosql->fetch_Seq_by_accession(). What it should do is to look > >>>for seqfeatures if the > >>>fetch_Seq_by_accession() doesn't return a result. > >>> > >>>This should be a simple fix . Simon, HIlmar, what is the > >>>appropriate biosql call to retrieve seqfeatures? > >>> > >>>Lincoln > >>> > >>>On Friday 28 January 2005 02:26 pm, Hilmar Lapp wrote: > >>> > >>>>So how do others do this then on biosql? Simon ran a benchmark > >>>>that included biosql. Ah - that was on an artifical dataset, > >>>>right? I thought Simon's been running gbrowse on top of biosql > >>>>for some demo site on real data? > >>>> > >>>>So this may need more work then in that the bridging code should > >>>>query either bioentry, or seqfeature, or possibly both, maybe > >>>>configurable? > >>>> > >>>> -hilmar > >>>> > >>>>On Thursday, January 27, 2005, at 12:59 PM, Marc Logghe wrote: > >>>> > >>>>>Hi Genevieve, > >>>>>my posts to gmod-gbrowse@lists.sourceforge.net seem to get lost > >>>>>one way or another. > >>>>> > >>>>>Anyhow, I am afraid I will not be able to help you out ... > >>>>>I can only make a few remarks. > >>>>>As far as I understand your pseudomonas biosql database > >>>>>contains 1 bioentry with the accession NC_004578 and sequence > >>>>>length 6397126 bp. A query in the gbrowse/biosql combination > >>>>>will only work for that accession and will return the complete > >>>>>segment. So I guess you get a kind of timeout because the the > >>>>>fetching of the bioentry from biosql takes too long. > >>>>>Also, as far as I know, it is not possible to query for > >>>>>features residing on that segment, e.g. the gene PSPTO0041. > >>>>>That is because gbrowse/biosql will only look for the bioentry > >>>>>in biosql with the accession number PSPTO0041 and not the gene > >>>>>feature with that locus_tag ! > >>>>>This is probably not the behaviour you want. > >>>>>An option I see, is that you convert the genbank record into > >>>>>gff and load that in gbrowse/chado or gbrowse/gff. > >>>>>I think genbank2gff3.pl is especially suited to do the > >>>>>conversion. Hope I am not terribly wrong here ... > >>>>> > >>>>>Regards, > >>>>>Marc > >>>>> > >>>>> > >>>>>>-----Original Message----- > >>>>>>From: Genevieve DeClerck [mailto:gad14@cornell.edu] > >>>>>>Sent: Thursday, January 27, 2005 6:14 PM > >>>>>>To: Marc Logghe > >>>>>>Cc: gmod-gbrowse@lists.sourceforge.net > >>>>>>Subject: Re: [Gmod-gbrowse] features not displaying > >>>>>> > >>>>>> > >>>>>> > >>>>>>Right, thanks Marc - I lost that line when I created my conf > >>>>>>file from > >>>>>>scratch (from 06.biosql.conf) for the umpteenth time. With > >>>>>>that line (and init_code.pl) I can successfully get the cds in > >>>>>>the 'parkin' example biosql database to display! So I moved to > >>>>>>the next step and created a new biosql db and loaded it with > >>>>>>data that I'm more interested > >>>>>>in.. the gbk file from ncbi of Pseudomonas syringae features > >>>>>>(ftp://bio-mirror.net/biomirror/ncbigenomes/Bacteria/Pseudomon > >>>>>>as_syringae/NC_004578.gbk). > >>>>>> > >>>>>> > >>>>>>I seem to be encountering a similar problem as with the > >>>>>>example parkin > >>>>>>db previous to adding back that line - everything appears to > >>>>>>be operating correctly in the browser, no errors in the web > >>>>>>log, but no features appear for CDS's or anything else. > >>>>>>Translation frames, GC content and sequence display fine. > >>>>>> > >>>>>>I'm starting to think that there's something amiss with how > >>>>>>the NC_004578.gbk data is stored in the database... or > >>>>>>something that biosql/gbrowse doesn't like about it. However, > >>>>>>I do not see anything weird with the data when I browse > >>>>>>through it in mysql. THe conf file i'm > >>>>>>using for the NC_004578 db is pretty much the same as what I > >>>>>>used for the parkin db.. just the appropriate changes in the > >>>>>>db_args def. > >>>>>> > >>>>>>Any thoughts? > >>>>>> > >>>>>>Thanks, > >>>>>>Genevieve > >>>>>> > >>>>>>Marc Logghe wrote: > >>>>>> > >>>>>>>Hi Genevieve, > >>>>>>>I am pretty sure it will be fixed when you adjust your conf > >>>>>> > >>>>>>like I suggested earlier. > >>>>>> > >>>>>> > >>>>>>>init_code = do "$main::CONF_DIR/init_code.pl"; > >>>>>>> > >>>>>>> > >>>>>>>and put init_code.pl in your gbrowse.conf directory. > >>>>>>> > >>>>>>> > >>>>>>>*Bio::SeqFeature::Generic::attributes = > >>>>>> > >>>>>>\&Bio::SeqFeature::Generic::get_tag_values; > >>>>>> > >>>>>> > >>>>>>>*Bio::SeqFeature::Generic::method = > >>>>>> > >>>>>>\&Bio::SeqFeature::Generic::primary_tag; > >>>>>> > >>>>>> > >>>>>>>*Bio::SeqFeature::Generic::type = sub { > >>>>>>> my $feat = shift; > >>>>>>> my ($method) = $feat->primary_tag; > >>>>>>> my ($source) = $feat->source_tag; > >>>>>>> return $method; > >>>>>>>}; > >>>>>>>*Bio::SeqFeature::Generic::name = sub { > >>>>>>> my $feat = shift; > >>>>>>> my $name = eval {($feat->get_tag_values('name'))[0]}; > >>>>>>> $name ||= eval {($feat->get_tag_values('label'))[0]}; > >>>>>>> $name ||= eval {($feat->get_tag_values('db_xref'))[0]}; > >>>>>>># $name ||= 'unknown'; > >>>>>>> print STDERR "name = $name\n"; > >>>>>>> return $name; > >>>>>>>} > >>>>>>> > >>>>>>> > >>>>>>>I tested it by commenting out the init_code line in my conf > >>>>>> > >>>>>>and I have the same things happening as you mention: no > >>>>>>features show up, no errors in the log. > >>>>>> > >>>>>> > >>>>>>>ML > >>>>>>> > >>>>>>> > >>>>>>>>Hi, > >>>>>>>> > >>>>>>>>I can't for the life of me figure out why features/glyphs > >>>>>>>>are not displaying in gbrowse. Everything else in the > >>>>>>>>browser page is displaying > >>>>>>>>fine - the header section, the footer, etc. A couple of > >>>>>>>>things display > >>>>>>>>ok in the feature window... GC Content, Translation fwd and > >>>>>>>>rev (including DNA sequence when zoomed all the way down). > >>>>>>>>But no real features, such as CDS, are displayed. The CDS > >>>>>>>>track has a label, "CDS," > >>>>>>>>but the rest is just plain empty, where I know there should > >>>>>>>>be a feature. > >>>>>>>> > >>>>>>>>I have gbrowse 1.62 running with a biosql-mysql database > >>>>>> > >>>>>>loaded with > >>>>>> > >>>>>> > >>>>>>>>bioperl-db example data file 'parkin.gb', which has one CDS. > >>>>>>>>[I just got > >>>>>>>>this setup working yesterday, thanks to help from this list > >>>>>>>>and BioSQL-l > >>>>>>>>- see posts from jan 25 2005: "gbrowse on top of biosql"]. > >>>>>>>>There are no > >>>>>>>>errors in the web error log or the mysql log. I triple > >>>>>>>>checked that the > >>>>>>>>parkin data is actually in the database and it is. > >>>>>>>> > >>>>>>>>..I'm thinking there must be something wrong with my gbrowse > >>>>>>>>conf file > >>>>>>>>for this database.. in particular in the track section. But > >>>>>>>>if that were > >>>>>>>>the case, wouldn't I be seeing errors in my httpd error > >>>>>> > >>>>>>log? The conf > >>>>>> > >>>>>> > >>>>>>>>file i have is almost an exact copy of a conf file that i've > >>>>>>>>seen referred to in the docs: 06.biosql.conf. The track > >>>>>>>>stanzas look reasonable, going from info in docs and > >>>>>>>>tutorial. How do I debug the conf file?? > >>>>>>>>Or should I be looking somewhere else? > >>>>>>>> > >>>>>>>>My biosql.conf file is pasted below. > >>>>>>>> > >>>>>>>>Any clues much appreciated. > >>>>>>>> > >>>>>>>>Thanks, > >>>>>>>>Genevieve > >>>>>>>> > >>>>>>>>#************** biosql.conf ***************** > >>>>>>>> > >>>>>>>>[GENERAL] > >>>>>>>>description = biosql > >>>>>>>>db_adaptor = Bio::DB::Das::BioSQL > >>>>>>>>db_args = driver mysql > >>>>>>>> dbname biosql > >>>>>>>> namespace genbank > >>>>>>>> host localhost > >>>>>>>> user nobody > >>>>>>>> pass '' > >>>>>>>> > >>>>>>>>plugins = SequenceDumper FastaDumper RestrictionAnnotator > >>>>>>>> > >>>>>>>># Web site configuration info > >>>>>>>>stylesheet = /gbrowse/gbrowse.css > >>>>>>>>buttons = /gbrowse/images/buttons > >>>>>>>>tmpimages = /gbrowse/tmp > >>>>>>>> > >>>>>>>># where to link to when user clicks in detaild view > >>>>>>>>#link = > >>>>>>>>http://localhost/perl/gbrowse?ref=$ref;start=$start;stop=$en > >>>>>>>>d link = AUTO > >>>>>>>> > >>>>>>>># what image widths to offer > >>>>>>>>image widths = 450 640 800 1024 > >>>>>>>> > >>>>>>>># default width of detailed view (pixels) > >>>>>>>>default width = 800 > >>>>>>>>default features = CDS > >>>>>>>> > >>>>>>>> > >>>>>>>># max and default segment sizes for detailed view > >>>>>>>>max segment = 500000 > >>>>>>>>default segment = 50000 > >>>>>>>> > >>>>>>>># zoom levels > >>>>>>>>zoom levels = 100 200 1000 2000 5000 10000 20000 40000 > >>>>>>>>100000 200000 > >>>>>>>>500000 1000000 > >>>>>>>>low res = 200000 > >>>>>>>> > >>>>>>>># colors of the overview, detailed map and key > >>>>>>>>overview bgcolor = wheat > >>>>>>>>detailed bgcolor = white > >>>>>>>>key bgcolor = beige > >>>>>>>> > >>>>>>>>footer =
> >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>>
> >>>>>>>> For the source code for this browser, see the >>>>>>>>href="http://www.gmod.org"> > >>>>>>>> Generic Model Organism Database Project. For other > >>>>>>>>questions, send > >>>>>>>> mail to >>>>>>>>href="mailto:lstein@cshl.org">lstein@cshl.org.
> >>>>>>>>
> >>>>>>>> 
$Id: 06.biosql.conf,v 1.1 2003/06/26 12:32:23
> >>>>>>>>lstein Exp $
> >>>>>>>> > >>>>>>>># examples to show in the introduction > >>>>>>>>examples = AB019558 > >>>>>>>> > >>>>>>>># "automatic" classes to try when an unqualified identifier > >>>>>>>>is given automatic classes = Accession > >>>>>>>> > >>>>>>>>[TRACK DEFAULTS] > >>>>>>>>glyph = generic > >>>>>>>>height = 8 > >>>>>>>>bgcolor = cyan > >>>>>>>>fgcolor = cyan > >>>>>>>>fontcolor = black > >>>>>>>>font2color = blue > >>>>>>>>label density = 25 > >>>>>>>>bump density = 100 > >>>>>>>>description = 1 > >>>>>>>> > >>>>>>>> > >>>>>>>>############################################################ > >>>>>>>>## ################## > >>>>>>>># the remainder of the sections configure particular > >>>>>>>>features to sho > >>>>>>>>############################################################ > >>>>>>>>## ################## > >>>>>>>> > >>>>>>>>[CDS] > >>>>>>>>feature = CDS > >>>>>>>>glyph = transcript2 > >>>>>>>>#glyph = generic > >>>>>>>>bgcolor = turquoise > >>>>>>>>fgcolor = black > >>>>>>>>height = 10 > >>>>>>>>connector = solid > >>>>>>>>key = CDS > >>>>>>>> > >>>>>>>>[REPEAT] > >>>>>>>>feature = repeat_region > >>>>>>>>glyph = generic > >>>>>>>>bgcolor = red > >>>>>>>>height = 10 > >>>>>>>>description = 1 > >>>>>>>>key = Repeat regions > >>>>>>>> > >>>>>>>>[TranslationF] > >>>>>>>>glyph = translation > >>>>>>>>global feature = 1 > >>>>>>>>frame0 = cadetblue > >>>>>>>>frame1 = blue > >>>>>>>>frame2 = darkblue > >>>>>>>>height = 20 > >>>>>>>>fgcolor = purple > >>>>>>>>strand = +1 > >>>>>>>>translation = 3frame > >>>>>>>>key = 3-frame translation (forward) > >>>>>>>> > >>>>>>>>[DNA/GC Content] > >>>>>>>>glyph = dna > >>>>>>>>global feature = 1 > >>>>>>>>height = 40 > >>>>>>>>do_gc = 1 > >>>>>>>>fgcolor = red > >>>>>>>>axis_color = blue > >>>>>>>> > >>>>>>>>[TranslationR] > >>>>>>>>glyph = translation > >>>>>>>>global feature = 1 > >>>>>>>>frame0 = darkred > >>>>>>>>frame1 = red > >>>>>>>>frame2 = crimson > >>>>>>>>height = 20 > >>>>>>>>fgcolor = blue > >>>>>>>>strand = -1 > >>>>>>>>translation = 3frame > >>>>>>>>key = 3-frame translation (reverse) > >>>>>>>> > >>>>>>>>#**************************************************** > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>>------------------------------------------------------- > >>>>>>>>This SF.Net email is sponsored by: IntelliVIEW -- > >>>>>>>>Interactive Reporting > >>>>>>>>Tool for open source databases. Create drag-&-drop reports. > >>>>>> > >>>>>>Save time > >>>>>> > >>>>>> > >>>>>>>>by over 75%! Publish reports on the web. Export to DOC, > >>>>>> > >>>>>>XLS, RTF, etc. > >>>>>> > >>>>>> > >>>>>>>>Download a FREE copy at > >>>>>>>>http://www.intelliview.com/go/osdn_nl > >>>>>>>>_______________________________________________ > >>>>>>>>Gmod-gbrowse mailing list > >>>>>>>>Gmod-gbrowse@lists.sourceforge.net > >>>>>>>>https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >>>>> > >>>>>------------------------------------------------------- > >>>>>This SF.Net email is sponsored by: IntelliVIEW -- Interactive > >>>>>Reporting Tool for open source databases. Create drag-&-drop > >>>>>reports. Save time by over 75%! Publish reports on the web. > >>>>>Export to DOC, XLS, RTF, etc. Download a FREE copy at > >>>>>http://www.intelliview.com/go/osdn_nl > >>>>>_______________________________________________ > >>>>>Gmod-gbrowse mailing list > >>>>>Gmod-gbrowse@lists.sourceforge.net > >>>>>https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >>> > >>>-- > >>>Lincoln D. Stein > >>>Cold Spring Harbor Laboratory > >>>1 Bungtown Road > >>>Cold Spring Harbor, NY 11724 > >>> > >>>NOTE: Please copy Sandra Michelsen on > >>>all emails regarding scheduling and other time-critical topics. > > > > > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: IntelliVIEW -- Interactive > Reporting > Tool for open source databases. Create drag-&-drop reports. Save time > by over 75%! Publish reports on the web. Export to DOC, XLS, RTF, etc. > Download a FREE copy at http://www.intelliview.com/go/osdn_nl > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > From Marc.Logghe at devgen.com Wed Feb 2 09:54:03 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Wed Feb 2 09:50:22 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying Message-ID: > 3) Bio::SeqFeature::Generic::get_tag_values does not exist > anymore: Bio::SeqFeature::Geneneric does not inherit from > Bio::AnnotatableI which implements that method, which is bad > (can it pass the tests, then ?). I don't know what the > situation is in bioperl-live HEAD. Correction: get_tag_values is inherited from Bio::AnnotatableI via Bio::SeqFeatureI. So, this error could be fixed by changing (in the 'horrible patch section' of package Bio::DB::Das::BioSQL bugfix-release) *Bio::SeqFeature::Generic::attributes = \&Bio::SeqFeature::Generic::get_tag_values; to: *Bio::SeqFeature::Generic::attributes = \&Bio::AnnotatableI::get_tag_values; Making it even more horrible ;-) But it works. It seems that in older bioperl-live releases there actually *was* a Bio::SeqFeature::Generic::get_tag_values sub making the original hack work. In release 1.5.0 this sub was gone, breaking the hack. Now, I'll try to tackle the double features problem. Status can be followed at http://biologghe.homelinux.org:4380/cgi-bin/gbrowse/biosql?name=NP_491141%3A1..629;source=biosql;width=800;version=100;label=CDS-REGION-PROTEIN (beware, it is a slow computer and a slow connection) Cheers, Marc From jason.stajich at duke.edu Wed Feb 2 08:16:45 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Wed Feb 2 11:47:49 2005 Subject: [Bioperl-l] The Feature changes which have broken compatibility In-Reply-To: References: Message-ID: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> This whole changing of core SeqFeature::Generic objects is pretty disturbing. Why can't we do this: - Bio::SeqIO, Bio::Tools::GFF, Bio::SeqFeature::Generic all remain the same as they were in 1.4. We back out the major changes to the inheritance - figure out whether or not things should be Bio::AnnotatableI. - Bio::FeatureIO make Bio::SeqFeature::Annotations which can have whatever interface and remove the "features your find annoying" without breaking the existing code which relied on things. The burden is on the person implementing new code NOT to break the existing interface which we want to be backwards compatible unless there is some reason not to..... There is no good reason scripts that work with bioperl-1.4 can't work with 1.5 (or 1.6). Many people will continue to use Bio;:Tools::GFF - for those who want GFF3 and SO validation, they should use Bio::FeatureIO. Lots of people are happy to continue in their blissful state of not using SO (and not installing Graph::Directed in order to parse a genbank file). The fact that Bio::SeqIO really expected Bio::SeqFeature::Generic objects instead of Bio::SeqFeatureI objects probably meant that we should be updating Bio::SeqFeatureI interface not just breaking things. We might need to improve Bio::SeqIO/Bio::SeqFeatureI to insure Bio::SeqFeatureI is general enough for the two objects. It really makes me uncomfortable how sloppy this appears to people using the toolkit - many of us have worked really hard to maintain backwards compatibility - dealing with the "annoying features" and somewhat legacy function names because someone wrote them before us and we didn't want to break people's scripts. When making lots of changes they really need to be either well tested (with additional tests perhaps) OR they need to be insulated from existing code. I really think we need to branch and back out these changes so we can provide a 1.5.1 release which most of the API is compatible with 1.4 scripts, and potentially plan to release 1.6 off this branch. I cannot be the release master, someone else must step up to be the coordinator and help with QA. -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 2, 2005, at 5:52 AM, Marc Logghe wrote: > Allright, status update about my little 'gbrowse on top of > biosql'-project. > > I have prepared a fresh linux box with bioperl-live tagged > bioperl-release-1-5-0, bioperl-db and bioperl-schema HEAD, > release_1_62-bugfixes Generic-Genome-Browser. > I loaded some genbank proteins in biosql (Thanks Hilmar for helping me > out !) and adapted 06.biosql.conf. > Three observations that at this (early) point can be made: > 1) init_code (providing some missing methods in order to make > Bio::SeqFeature::Generic and Bio::Graphics::Feature more compliant) is > not needed anymore, which is good (Thanks Lincoln) > 2) all features are displayed in duplicate (I'll flesh that one out). > This confirms the things Genevieve is seeing. > 3) Bio::SeqFeature::Generic::get_tag_values does not exist anymore: > Bio::SeqFeature::Geneneric does not inherit from Bio::AnnotatableI > which implements that method, which is bad (can it pass the tests, > then ?). I don't know what the situation is in bioperl-live HEAD. > > Cheers, > Marc > > >> -----Original Message----- >> From: gmod-gbrowse-admin@lists.sourceforge.net >> [mailto:gmod-gbrowse-admin@lists.sourceforge.net]On Behalf Of >> Genevieve >> DeClerck >> Sent: Tuesday, February 01, 2005 10:57 PM >> To: gmod-gbrowse@lists.sourceforge.net >> Cc: Lincoln Stein >> Subject: Re: [Gmod-gbrowse] features not displaying >> >> >> >> I've been playing around with the NC_004578.gbk (P.syringae DC3000 >> chromosome) file I got from ncbi that I've been trying to >> display in a >> biosql/gbrowse setup -- I got some of the data to >> partically display.. >> >> I found that if I remove the whole genome sequence (ORIGIN record) at >> the end of NC_004578.gbk so that just the feature records remain, and >> load this into a fresh biosql db, CDS's display in GBrowse. But there >> are a couple of problems with what's displayed: >> >> 1) no features with a stop coordinate > 500,000 are shown, so >> for DC3000 >> only about a 1/6 of the genome features are shown; >> >> 2) all the CDS features are duplicated.. there are two >> colored bars for >> each CDS. When you mouse over dulpicate bars they both >> display something >> like: "CDS: :813..1916". I thought this might have something >> to do with >> the fact that in the gbk file, most if not all of the CDS >> records have >> corresponding 'gene' records with the same exact coordinates, but the >> Genes have their own duplication problem... the gene records also >> display in duplicate ... mousing over the gene glyphs in the >> same region >> as the CDS above shows this: "Gene: :813..1916". >> >> Another test I performed with the NC_004578.gbk file is that >> I severely >> truncated the whole genome sequence at the end of the file.. removing >> all sequence after the '7141' line. And I removed all features in the >> file that had a coord > 7000. This left 4 CDSs and 4 genes. The file >> loads fine and displays all 4 features.. in duplicate. So >> when selecting >> the Landmark, "NC_004578:1..7200", all features are visible.. >> 16 glyphs >> total due to duplication. >> >> The web log is not showing any errors of note.. >> >> -Genevieve >> >> >> >> Lincoln Stein wrote: >> >>> Sounds like Simon and I will have to work through this. >> Probably the >>> display_name needs to get set more broadly. >>> >>> Lincoln >>> >>> On Friday 28 January 2005 07:30 pm, Hilmar Lapp wrote: >>> >>>> I haven't had a chance yet to look at this in the code so I am and >>>> probably sound a bit confused. In order to display something in >>>> gbrowse wouldn't you need coordinates? >>>> >>>> If what the code does is to fetch sequences, then they don't have >>>> coordinates - only their feature(s) do/does (which are >>>> auto-retrieved along with the seqs). This means that you'd have to >>>> have loaded the database with sequence entries whose feature table >>>> gives the coordinates of the *sequence*. Usually the feature table >>>> will give the coordinates of the features on the sequence, no? >>>> (unless it's a remote location) >>>> >>>> Assuming in your question you mean retrieving features by name, the >>>> naive answer is similar to how you do this for seq by accession, >>>> except you ask for the SeqFeatureI adaptor, provide a SeqFeatureI >>>> factory, specify SeqFeatureI in the collections, and constrain by >>>> the display_name property of the SeqFeatureI entity. >>>> >>>> However, this probably won't work for most dataload situations >>>> because bioperl doesn't set the display_name property in any of its >>>> rich format parsers. The corresponding column is optional in >>>> biosql, so there's no error or warning from that. >>>> >>>> So, if your name or identifier to search by is the value of a >>>> feature tag, technically it will be in the value column of the >>>> seqfeature_qualifier_value table unless you massaged the data >>>> structure prior to upload. You then need to set up a BioQuery with >>>> SeqFeatureI and Bio::Annotation::SimpleValue as entities to be >>>> joined, and constrain by value of the latter. This may mean nothing >>>> to most, but I hope Simon has some idea on what I'm talking about. >>>> >>>> -hilmar >>>> >>>> On Jan 28, 2005, at 12:14 PM, Lincoln Stein wrote: >>>> >>>>> There's a central call in the gbrowse/biosql adaptor called >>>>> get_feature_by_name() that calls >>>>> biosql->fetch_Seq_by_accession(). What it should do is to look >>>>> for seqfeatures if the >>>>> fetch_Seq_by_accession() doesn't return a result. >>>>> >>>>> This should be a simple fix . Simon, HIlmar, what is the >>>>> appropriate biosql call to retrieve seqfeatures? >>>>> >>>>> Lincoln >>>>> >>>>> On Friday 28 January 2005 02:26 pm, Hilmar Lapp wrote: >>>>> >>>>>> So how do others do this then on biosql? Simon ran a benchmark >>>>>> that included biosql. Ah - that was on an artifical dataset, >>>>>> right? I thought Simon's been running gbrowse on top of biosql >>>>>> for some demo site on real data? >>>>>> >>>>>> So this may need more work then in that the bridging code should >>>>>> query either bioentry, or seqfeature, or possibly both, maybe >>>>>> configurable? >>>>>> >>>>>> -hilmar >>>>>> >>>>>> On Thursday, January 27, 2005, at 12:59 PM, Marc Logghe wrote: >>>>>> >>>>>>> Hi Genevieve, >>>>>>> my posts to gmod-gbrowse@lists.sourceforge.net seem to get lost >>>>>>> one way or another. >>>>>>> >>>>>>> Anyhow, I am afraid I will not be able to help you out ... >>>>>>> I can only make a few remarks. >>>>>>> As far as I understand your pseudomonas biosql database >>>>>>> contains 1 bioentry with the accession NC_004578 and sequence >>>>>>> length 6397126 bp. A query in the gbrowse/biosql combination >>>>>>> will only work for that accession and will return the complete >>>>>>> segment. So I guess you get a kind of timeout because the the >>>>>>> fetching of the bioentry from biosql takes too long. >>>>>>> Also, as far as I know, it is not possible to query for >>>>>>> features residing on that segment, e.g. the gene PSPTO0041. >>>>>>> That is because gbrowse/biosql will only look for the bioentry >>>>>>> in biosql with the accession number PSPTO0041 and not the gene >>>>>>> feature with that locus_tag ! >>>>>>> This is probably not the behaviour you want. >>>>>>> An option I see, is that you convert the genbank record into >>>>>>> gff and load that in gbrowse/chado or gbrowse/gff. >>>>>>> I think genbank2gff3.pl is especially suited to do the >>>>>>> conversion. Hope I am not terribly wrong here ... >>>>>>> >>>>>>> Regards, >>>>>>> Marc >>>>>>> >>>>>>> >>>>>>>> -----Original Message----- >>>>>>>> From: Genevieve DeClerck [mailto:gad14@cornell.edu] >>>>>>>> Sent: Thursday, January 27, 2005 6:14 PM >>>>>>>> To: Marc Logghe >>>>>>>> Cc: gmod-gbrowse@lists.sourceforge.net >>>>>>>> Subject: Re: [Gmod-gbrowse] features not displaying >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Right, thanks Marc - I lost that line when I created my conf >>>>>>>> file from >>>>>>>> scratch (from 06.biosql.conf) for the umpteenth time. With >>>>>>>> that line (and init_code.pl) I can successfully get the cds in >>>>>>>> the 'parkin' example biosql database to display! So I moved to >>>>>>>> the next step and created a new biosql db and loaded it with >>>>>>>> data that I'm more interested >>>>>>>> in.. the gbk file from ncbi of Pseudomonas syringae features >>>>>>>> (ftp://bio-mirror.net/biomirror/ncbigenomes/Bacteria/Pseudomon >>>>>>>> as_syringae/NC_004578.gbk). >>>>>>>> >>>>>>>> >>>>>>>> I seem to be encountering a similar problem as with the >>>>>>>> example parkin >>>>>>>> db previous to adding back that line - everything appears to >>>>>>>> be operating correctly in the browser, no errors in the web >>>>>>>> log, but no features appear for CDS's or anything else. >>>>>>>> Translation frames, GC content and sequence display fine. >>>>>>>> >>>>>>>> I'm starting to think that there's something amiss with how >>>>>>>> the NC_004578.gbk data is stored in the database... or >>>>>>>> something that biosql/gbrowse doesn't like about it. However, >>>>>>>> I do not see anything weird with the data when I browse >>>>>>>> through it in mysql. THe conf file i'm >>>>>>>> using for the NC_004578 db is pretty much the same as what I >>>>>>>> used for the parkin db.. just the appropriate changes in the >>>>>>>> db_args def. >>>>>>>> >>>>>>>> Any thoughts? >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Genevieve >>>>>>>> >>>>>>>> Marc Logghe wrote: >>>>>>>> >>>>>>>>> Hi Genevieve, >>>>>>>>> I am pretty sure it will be fixed when you adjust your conf >>>>>>>> >>>>>>>> like I suggested earlier. >>>>>>>> >>>>>>>> >>>>>>>>> init_code = do "$main::CONF_DIR/init_code.pl"; >>>>>>>>> >>>>>>>>> >>>>>>>>> and put init_code.pl in your gbrowse.conf directory. >>>>>>>>> >>>>>>>>> >>>>>>>>> *Bio::SeqFeature::Generic::attributes = >>>>>>>> >>>>>>>> \&Bio::SeqFeature::Generic::get_tag_values; >>>>>>>> >>>>>>>> >>>>>>>>> *Bio::SeqFeature::Generic::method = >>>>>>>> >>>>>>>> \&Bio::SeqFeature::Generic::primary_tag; >>>>>>>> >>>>>>>> >>>>>>>>> *Bio::SeqFeature::Generic::type = sub { >>>>>>>>> my $feat = shift; >>>>>>>>> my ($method) = $feat->primary_tag; >>>>>>>>> my ($source) = $feat->source_tag; >>>>>>>>> return $method; >>>>>>>>> }; >>>>>>>>> *Bio::SeqFeature::Generic::name = sub { >>>>>>>>> my $feat = shift; >>>>>>>>> my $name = eval {($feat->get_tag_values('name'))[0]}; >>>>>>>>> $name ||= eval {($feat->get_tag_values('label'))[0]}; >>>>>>>>> $name ||= eval {($feat->get_tag_values('db_xref'))[0]}; >>>>>>>>> # $name ||= 'unknown'; >>>>>>>>> print STDERR "name = $name\n"; >>>>>>>>> return $name; >>>>>>>>> } >>>>>>>>> >>>>>>>>> >>>>>>>>> I tested it by commenting out the init_code line in my conf >>>>>>>> >>>>>>>> and I have the same things happening as you mention: no >>>>>>>> features show up, no errors in the log. >>>>>>>> >>>>>>>> >>>>>>>>> ML >>>>>>>>> >>>>>>>>> >>>>>>>>>> Hi, >>>>>>>>>> >>>>>>>>>> I can't for the life of me figure out why features/glyphs >>>>>>>>>> are not displaying in gbrowse. Everything else in the >>>>>>>>>> browser page is displaying >>>>>>>>>> fine - the header section, the footer, etc. A couple of >>>>>>>>>> things display >>>>>>>>>> ok in the feature window... GC Content, Translation fwd and >>>>>>>>>> rev (including DNA sequence when zoomed all the way down). >>>>>>>>>> But no real features, such as CDS, are displayed. The CDS >>>>>>>>>> track has a label, "CDS," >>>>>>>>>> but the rest is just plain empty, where I know there should >>>>>>>>>> be a feature. >>>>>>>>>> >>>>>>>>>> I have gbrowse 1.62 running with a biosql-mysql database >>>>>>>> >>>>>>>> loaded with >>>>>>>> >>>>>>>> >>>>>>>>>> bioperl-db example data file 'parkin.gb', which has one CDS. >>>>>>>>>> [I just got >>>>>>>>>> this setup working yesterday, thanks to help from this list >>>>>>>>>> and BioSQL-l >>>>>>>>>> - see posts from jan 25 2005: "gbrowse on top of biosql"]. >>>>>>>>>> There are no >>>>>>>>>> errors in the web error log or the mysql log. I triple >>>>>>>>>> checked that the >>>>>>>>>> parkin data is actually in the database and it is. >>>>>>>>>> >>>>>>>>>> ..I'm thinking there must be something wrong with my gbrowse >>>>>>>>>> conf file >>>>>>>>>> for this database.. in particular in the track section. But >>>>>>>>>> if that were >>>>>>>>>> the case, wouldn't I be seeing errors in my httpd error >>>>>>>> >>>>>>>> log? The conf >>>>>>>> >>>>>>>> >>>>>>>>>> file i have is almost an exact copy of a conf file that i've >>>>>>>>>> seen referred to in the docs: 06.biosql.conf. The track >>>>>>>>>> stanzas look reasonable, going from info in docs and >>>>>>>>>> tutorial. How do I debug the conf file?? >>>>>>>>>> Or should I be looking somewhere else? >>>>>>>>>> >>>>>>>>>> My biosql.conf file is pasted below. >>>>>>>>>> >>>>>>>>>> Any clues much appreciated. >>>>>>>>>> >>>>>>>>>> Thanks, >>>>>>>>>> Genevieve >>>>>>>>>> >>>>>>>>>> #************** biosql.conf ***************** >>>>>>>>>> >>>>>>>>>> [GENERAL] >>>>>>>>>> description = biosql >>>>>>>>>> db_adaptor = Bio::DB::Das::BioSQL >>>>>>>>>> db_args = driver mysql >>>>>>>>>> dbname biosql >>>>>>>>>> namespace genbank >>>>>>>>>> host localhost >>>>>>>>>> user nobody >>>>>>>>>> pass '' >>>>>>>>>> >>>>>>>>>> plugins = SequenceDumper FastaDumper RestrictionAnnotator >>>>>>>>>> >>>>>>>>>> # Web site configuration info >>>>>>>>>> stylesheet = /gbrowse/gbrowse.css >>>>>>>>>> buttons = /gbrowse/images/buttons >>>>>>>>>> tmpimages = /gbrowse/tmp >>>>>>>>>> >>>>>>>>>> # where to link to when user clicks in detaild view >>>>>>>>>> #link = >>>>>>>>>> http://localhost/perl/gbrowse?ref=$ref;start=$start;stop=$en >>>>>>>>>> d link = AUTO >>>>>>>>>> >>>>>>>>>> # what image widths to offer >>>>>>>>>> image widths = 450 640 800 1024 >>>>>>>>>> >>>>>>>>>> # default width of detailed view (pixels) >>>>>>>>>> default width = 800 >>>>>>>>>> default features = CDS >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> # max and default segment sizes for detailed view >>>>>>>>>> max segment = 500000 >>>>>>>>>> default segment = 50000 >>>>>>>>>> >>>>>>>>>> # zoom levels >>>>>>>>>> zoom levels = 100 200 1000 2000 5000 10000 20000 40000 >>>>>>>>>> 100000 200000 >>>>>>>>>> 500000 1000000 >>>>>>>>>> low res = 200000 >>>>>>>>>> >>>>>>>>>> # colors of the overview, detailed map and key >>>>>>>>>> overview bgcolor = wheat >>>>>>>>>> detailed bgcolor = white >>>>>>>>>> key bgcolor = beige >>>>>>>>>> >>>>>>>>>> footer =
>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>
>>>>>>>>>> For the source code for this browser, see the >>>>>>>>> href="http://www.gmod.org"> >>>>>>>>>> Generic Model Organism Database Project. For other >>>>>>>>>> questions, send >>>>>>>>>> mail to >>>>>>>>> href="mailto:lstein@cshl.org">lstein@cshl.org.
>>>>>>>>>>
>>>>>>>>>> 
$Id: 06.biosql.conf,v 1.1 2003/06/26 12:32:23
>>>>>>>>>> lstein Exp $
>>>>>>>>>> >>>>>>>>>> # examples to show in the introduction >>>>>>>>>> examples = AB019558 >>>>>>>>>> >>>>>>>>>> # "automatic" classes to try when an unqualified identifier >>>>>>>>>> is given automatic classes = Accession >>>>>>>>>> >>>>>>>>>> [TRACK DEFAULTS] >>>>>>>>>> glyph = generic >>>>>>>>>> height = 8 >>>>>>>>>> bgcolor = cyan >>>>>>>>>> fgcolor = cyan >>>>>>>>>> fontcolor = black >>>>>>>>>> font2color = blue >>>>>>>>>> label density = 25 >>>>>>>>>> bump density = 100 >>>>>>>>>> description = 1 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> ############################################################ >>>>>>>>>> ## ################## >>>>>>>>>> # the remainder of the sections configure particular >>>>>>>>>> features to sho >>>>>>>>>> ############################################################ >>>>>>>>>> ## ################## >>>>>>>>>> >>>>>>>>>> [CDS] >>>>>>>>>> feature = CDS >>>>>>>>>> glyph = transcript2 >>>>>>>>>> #glyph = generic >>>>>>>>>> bgcolor = turquoise >>>>>>>>>> fgcolor = black >>>>>>>>>> height = 10 >>>>>>>>>> connector = solid >>>>>>>>>> key = CDS >>>>>>>>>> >>>>>>>>>> [REPEAT] >>>>>>>>>> feature = repeat_region >>>>>>>>>> glyph = generic >>>>>>>>>> bgcolor = red >>>>>>>>>> height = 10 >>>>>>>>>> description = 1 >>>>>>>>>> key = Repeat regions >>>>>>>>>> >>>>>>>>>> [TranslationF] >>>>>>>>>> glyph = translation >>>>>>>>>> global feature = 1 >>>>>>>>>> frame0 = cadetblue >>>>>>>>>> frame1 = blue >>>>>>>>>> frame2 = darkblue >>>>>>>>>> height = 20 >>>>>>>>>> fgcolor = purple >>>>>>>>>> strand = +1 >>>>>>>>>> translation = 3frame >>>>>>>>>> key = 3-frame translation (forward) >>>>>>>>>> >>>>>>>>>> [DNA/GC Content] >>>>>>>>>> glyph = dna >>>>>>>>>> global feature = 1 >>>>>>>>>> height = 40 >>>>>>>>>> do_gc = 1 >>>>>>>>>> fgcolor = red >>>>>>>>>> axis_color = blue >>>>>>>>>> >>>>>>>>>> [TranslationR] >>>>>>>>>> glyph = translation >>>>>>>>>> global feature = 1 >>>>>>>>>> frame0 = darkred >>>>>>>>>> frame1 = red >>>>>>>>>> frame2 = crimson >>>>>>>>>> height = 20 >>>>>>>>>> fgcolor = blue >>>>>>>>>> strand = -1 >>>>>>>>>> translation = 3frame >>>>>>>>>> key = 3-frame translation (reverse) >>>>>>>>>> >>>>>>>>>> #**************************************************** >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> ------------------------------------------------------- >>>>>>>>>> This SF.Net email is sponsored by: IntelliVIEW -- >>>>>>>>>> Interactive Reporting >>>>>>>>>> Tool for open source databases. Create drag-&-drop reports. >>>>>>>> >>>>>>>> Save time >>>>>>>> >>>>>>>> >>>>>>>>>> by over 75%! Publish reports on the web. Export to DOC, >>>>>>>> >>>>>>>> XLS, RTF, etc. >>>>>>>> >>>>>>>> >>>>>>>>>> Download a FREE copy at >>>>>>>>>> http://www.intelliview.com/go/osdn_nl >>>>>>>>>> _______________________________________________ >>>>>>>>>> Gmod-gbrowse mailing list >>>>>>>>>> Gmod-gbrowse@lists.sourceforge.net >>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>>>>>> >>>>>>> ------------------------------------------------------- >>>>>>> This SF.Net email is sponsored by: IntelliVIEW -- Interactive >>>>>>> Reporting Tool for open source databases. Create drag-&-drop >>>>>>> reports. Save time by over 75%! Publish reports on the web. >>>>>>> Export to DOC, XLS, RTF, etc. Download a FREE copy at >>>>>>> http://www.intelliview.com/go/osdn_nl >>>>>>> _______________________________________________ >>>>>>> Gmod-gbrowse mailing list >>>>>>> Gmod-gbrowse@lists.sourceforge.net >>>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>>>> >>>>> -- >>>>> Lincoln D. Stein >>>>> Cold Spring Harbor Laboratory >>>>> 1 Bungtown Road >>>>> Cold Spring Harbor, NY 11724 >>>>> >>>>> NOTE: Please copy Sandra Michelsen on >>>>> all emails regarding scheduling and other time-critical topics. >>> >>> >> >> >> >> ------------------------------------------------------- >> This SF.Net email is sponsored by: IntelliVIEW -- Interactive >> Reporting >> Tool for open source databases. Create drag-&-drop reports. Save time >> by over 75%! Publish reports on the web. Export to DOC, XLS, RTF, etc. >> Download a FREE copy at http://www.intelliview.com/go/osdn_nl >> _______________________________________________ >> Gmod-gbrowse mailing list >> Gmod-gbrowse@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050202/7409831d/PGP.bin From lstein at cshl.edu Wed Feb 2 11:41:41 2005 From: lstein at cshl.edu (Lincoln Stein) Date: Wed Feb 2 11:47:50 2005 Subject: [Bioperl-l] Re: [Gmod-gbrowse] features not displaying In-Reply-To: References: Message-ID: <200502021141.41583.lstein@cshl.edu> Hi Marc, Can you take the responsibility for keeping the "horrible hack" section of the bugfixes branch up to date in CVS? I don't want to start colliding with you. Lincoln On Wednesday 02 February 2005 09:54 am, Marc Logghe wrote: > > 3) Bio::SeqFeature::Generic::get_tag_values does not exist > > anymore: Bio::SeqFeature::Geneneric does not inherit from > > Bio::AnnotatableI which implements that method, which is bad > > (can it pass the tests, then ?). I don't know what the > > situation is in bioperl-live HEAD. > > Correction: get_tag_values is inherited from Bio::AnnotatableI via > Bio::SeqFeatureI. > > So, this error could be fixed by changing (in the 'horrible patch > section' of package Bio::DB::Das::BioSQL bugfix-release) > *Bio::SeqFeature::Generic::attributes = > \&Bio::SeqFeature::Generic::get_tag_values; to: > *Bio::SeqFeature::Generic::attributes = > \&Bio::AnnotatableI::get_tag_values; > > Making it even more horrible ;-) > But it works. > It seems that in older bioperl-live releases there actually *was* a > Bio::SeqFeature::Generic::get_tag_values sub making the original > hack work. In release 1.5.0 this sub was gone, breaking the hack. > > Now, I'll try to tackle the double features problem. Status can be > followed at > http://biologghe.homelinux.org:4380/cgi-bin/gbrowse/biosql?name=NP_ >491141%3A1..629;source=biosql;width=800;version=100;label=CDS-REGION >-PROTEIN (beware, it is a slow computer and a slow connection) > > Cheers, > Marc > > > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: IntelliVIEW -- Interactive > Reporting Tool for open source databases. Create drag-&-drop > reports. Save time by over 75%! Publish reports on the web. Export > to DOC, XLS, RTF, etc. Download a FREE copy at > http://www.intelliview.com/go/osdn_nl > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse -- Lincoln D. Stein Cold Spring Harbor Laboratory 1 Bungtown Road Cold Spring Harbor, NY 11724 NOTE: Please copy Sandra Michelsen on all emails regarding scheduling and other time-critical topics. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 189 bytes Desc: not available Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050202/6568570f/attachment.bin From Marc.Logghe at devgen.com Wed Feb 2 12:05:06 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Wed Feb 2 12:01:11 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying Message-ID: > Hi Marc, > > Can you take the responsibility for keeping the "horrible hack" > section of the bugfixes branch up to date in CVS? I don't want to > start colliding with you. > OK, I'll take care of it. Regards, Marc From jason.stajich at duke.edu Wed Feb 2 13:16:07 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Wed Feb 2 13:16:40 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying In-Reply-To: References: Message-ID: <3429b4980df9bb9c6a32dc98b5d99eca@duke.edu> I think we really need to unify the attributes / get_tag_values, name/seq_id/display_name Bio::SeqFeatureI,Bio::AnnotableI, Bio::Das::SegmentI functions. This seems to be the crux of the problems. If we can document what is expected can we not update the interfaces and push the method aliases down to the primary objects. I don't know that we ever expected Bio::SeqFeature::Generic objects to have the 'attributes' method - is this a Das/Bioperl method naming conflict? -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 2, 2005, at 9:54 AM, Marc Logghe wrote: >> 3) Bio::SeqFeature::Generic::get_tag_values does not exist >> anymore: Bio::SeqFeature::Geneneric does not inherit from >> Bio::AnnotatableI which implements that method, which is bad >> (can it pass the tests, then ?). I don't know what the >> situation is in bioperl-live HEAD. > > Correction: get_tag_values is inherited from Bio::AnnotatableI via > Bio::SeqFeatureI. > > So, this error could be fixed by changing (in the 'horrible patch > section' of package Bio::DB::Das::BioSQL bugfix-release) > *Bio::SeqFeature::Generic::attributes = > \&Bio::SeqFeature::Generic::get_tag_values; > to: > *Bio::SeqFeature::Generic::attributes = > \&Bio::AnnotatableI::get_tag_values; > > Making it even more horrible ;-) > But it works. > It seems that in older bioperl-live releases there actually *was* a > Bio::SeqFeature::Generic::get_tag_values sub making the original hack > work. In release 1.5.0 this sub was gone, breaking the hack. > > Now, I'll try to tackle the double features problem. Status can be > followed at > http://biologghe.homelinux.org:4380/cgi-bin/gbrowse/biosql? > name=NP_491141%3A1..629;source=biosql;width=800;version=100;label=CDS- > REGION-PROTEIN > (beware, it is a slow computer and a slow connection) > > Cheers, > Marc > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050202/2f495709/PGP-0001.bin From hlapp at gmx.net Wed Feb 2 13:03:45 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Wed Feb 2 13:16:42 2005 Subject: [Bioperl-l] The Feature changes which have broken compatibility In-Reply-To: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> Message-ID: I'm guess nobody will be surprised, but I do agree with Jason's sentiment wholeheartedly. -hilmar On Wednesday, February 2, 2005, at 05:16 AM, Jason Stajich wrote: > > This whole changing of core SeqFeature::Generic objects is pretty > disturbing. > > Why can't we do this: > - Bio::SeqIO, Bio::Tools::GFF, Bio::SeqFeature::Generic all remain the > same as they were in 1.4. We back out the major changes to the > inheritance - figure out whether or not things should be > Bio::AnnotatableI. > > - Bio::FeatureIO make Bio::SeqFeature::Annotations which can have > whatever interface and remove the "features your find annoying" > without breaking the existing code which relied on things. > > The burden is on the person implementing new code NOT to break the > existing interface which we want to be backwards compatible unless > there is some reason not to..... There is no good reason scripts > that work with bioperl-1.4 can't work with 1.5 (or 1.6). > > Many people will continue to use Bio;:Tools::GFF - for those who want > GFF3 and SO validation, they should use Bio::FeatureIO. Lots of > people are happy to continue in their blissful state of not using SO > (and not installing Graph::Directed in order to parse a genbank file). > > The fact that Bio::SeqIO really expected Bio::SeqFeature::Generic > objects instead of Bio::SeqFeatureI objects probably meant that we > should be updating Bio::SeqFeatureI interface not just breaking > things. We might need to improve Bio::SeqIO/Bio::SeqFeatureI to > insure Bio::SeqFeatureI is general enough for the two objects. > > > It really makes me uncomfortable how sloppy this appears to people > using the toolkit - many of us have worked really hard to maintain > backwards compatibility - dealing with the "annoying features" and > somewhat legacy function names because someone wrote them before us > and we didn't want to break people's scripts. When making lots of > changes they really need to be either well tested (with additional > tests perhaps) OR they need to be insulated from existing code. > > I really think we need to branch and back out these changes so we can > provide a 1.5.1 release which most of the API is compatible with 1.4 > scripts, and potentially plan to release 1.6 off this branch. I > cannot be the release master, someone else must step up to be the > coordinator and help with QA. > > -jason > > -- > Jason Stajich > jason.stajich at duke.edu > http://www.duke.edu/~jes12/ > On Feb 2, 2005, at 5:52 AM, Marc Logghe wrote: > >> Allright, status update about my little 'gbrowse on top of >> biosql'-project. >> >> I have prepared a fresh linux box with bioperl-live tagged >> bioperl-release-1-5-0, bioperl-db and bioperl-schema HEAD, >> release_1_62-bugfixes Generic-Genome-Browser. >> I loaded some genbank proteins in biosql (Thanks Hilmar for helping >> me out !) and adapted 06.biosql.conf. >> Three observations that at this (early) point can be made: >> 1) init_code (providing some missing methods in order to make >> Bio::SeqFeature::Generic and Bio::Graphics::Feature more compliant) >> is not needed anymore, which is good (Thanks Lincoln) >> 2) all features are displayed in duplicate (I'll flesh that one out). >> This confirms the things Genevieve is seeing. >> 3) Bio::SeqFeature::Generic::get_tag_values does not exist anymore: >> Bio::SeqFeature::Geneneric does not inherit from Bio::AnnotatableI >> which implements that method, which is bad (can it pass the tests, >> then ?). I don't know what the situation is in bioperl-live HEAD. >> >> Cheers, >> Marc >> >> >>> -----Original Message----- >>> From: gmod-gbrowse-admin@lists.sourceforge.net >>> [mailto:gmod-gbrowse-admin@lists.sourceforge.net]On Behalf Of >>> Genevieve >>> DeClerck >>> Sent: Tuesday, February 01, 2005 10:57 PM >>> To: gmod-gbrowse@lists.sourceforge.net >>> Cc: Lincoln Stein >>> Subject: Re: [Gmod-gbrowse] features not displaying >>> >>> >>> >>> I've been playing around with the NC_004578.gbk (P.syringae DC3000 >>> chromosome) file I got from ncbi that I've been trying to >>> display in a >>> biosql/gbrowse setup -- I got some of the data to >>> partically display.. >>> >>> I found that if I remove the whole genome sequence (ORIGIN record) at >>> the end of NC_004578.gbk so that just the feature records remain, and >>> load this into a fresh biosql db, CDS's display in GBrowse. But there >>> are a couple of problems with what's displayed: >>> >>> 1) no features with a stop coordinate > 500,000 are shown, so >>> for DC3000 >>> only about a 1/6 of the genome features are shown; >>> >>> 2) all the CDS features are duplicated.. there are two >>> colored bars for >>> each CDS. When you mouse over dulpicate bars they both >>> display something >>> like: "CDS: :813..1916". I thought this might have something >>> to do with >>> the fact that in the gbk file, most if not all of the CDS >>> records have >>> corresponding 'gene' records with the same exact coordinates, but the >>> Genes have their own duplication problem... the gene records also >>> display in duplicate ... mousing over the gene glyphs in the >>> same region >>> as the CDS above shows this: "Gene: :813..1916". >>> >>> Another test I performed with the NC_004578.gbk file is that >>> I severely >>> truncated the whole genome sequence at the end of the file.. removing >>> all sequence after the '7141' line. And I removed all features in the >>> file that had a coord > 7000. This left 4 CDSs and 4 genes. The file >>> loads fine and displays all 4 features.. in duplicate. So >>> when selecting >>> the Landmark, "NC_004578:1..7200", all features are visible.. >>> 16 glyphs >>> total due to duplication. >>> >>> The web log is not showing any errors of note.. >>> >>> -Genevieve >>> >>> >>> >>> Lincoln Stein wrote: >>> >>>> Sounds like Simon and I will have to work through this. >>> Probably the >>>> display_name needs to get set more broadly. >>>> >>>> Lincoln >>>> >>>> On Friday 28 January 2005 07:30 pm, Hilmar Lapp wrote: >>>> >>>>> I haven't had a chance yet to look at this in the code so I am and >>>>> probably sound a bit confused. In order to display something in >>>>> gbrowse wouldn't you need coordinates? >>>>> >>>>> If what the code does is to fetch sequences, then they don't have >>>>> coordinates - only their feature(s) do/does (which are >>>>> auto-retrieved along with the seqs). This means that you'd have to >>>>> have loaded the database with sequence entries whose feature table >>>>> gives the coordinates of the *sequence*. Usually the feature table >>>>> will give the coordinates of the features on the sequence, no? >>>>> (unless it's a remote location) >>>>> >>>>> Assuming in your question you mean retrieving features by name, the >>>>> naive answer is similar to how you do this for seq by accession, >>>>> except you ask for the SeqFeatureI adaptor, provide a SeqFeatureI >>>>> factory, specify SeqFeatureI in the collections, and constrain by >>>>> the display_name property of the SeqFeatureI entity. >>>>> >>>>> However, this probably won't work for most dataload situations >>>>> because bioperl doesn't set the display_name property in any of its >>>>> rich format parsers. The corresponding column is optional in >>>>> biosql, so there's no error or warning from that. >>>>> >>>>> So, if your name or identifier to search by is the value of a >>>>> feature tag, technically it will be in the value column of the >>>>> seqfeature_qualifier_value table unless you massaged the data >>>>> structure prior to upload. You then need to set up a BioQuery with >>>>> SeqFeatureI and Bio::Annotation::SimpleValue as entities to be >>>>> joined, and constrain by value of the latter. This may mean nothing >>>>> to most, but I hope Simon has some idea on what I'm talking about. >>>>> >>>>> -hilmar >>>>> >>>>> On Jan 28, 2005, at 12:14 PM, Lincoln Stein wrote: >>>>> >>>>>> There's a central call in the gbrowse/biosql adaptor called >>>>>> get_feature_by_name() that calls >>>>>> biosql->fetch_Seq_by_accession(). What it should do is to look >>>>>> for seqfeatures if the >>>>>> fetch_Seq_by_accession() doesn't return a result. >>>>>> >>>>>> This should be a simple fix . Simon, HIlmar, what is the >>>>>> appropriate biosql call to retrieve seqfeatures? >>>>>> >>>>>> Lincoln >>>>>> >>>>>> On Friday 28 January 2005 02:26 pm, Hilmar Lapp wrote: >>>>>> >>>>>>> So how do others do this then on biosql? Simon ran a benchmark >>>>>>> that included biosql. Ah - that was on an artifical dataset, >>>>>>> right? I thought Simon's been running gbrowse on top of biosql >>>>>>> for some demo site on real data? >>>>>>> >>>>>>> So this may need more work then in that the bridging code should >>>>>>> query either bioentry, or seqfeature, or possibly both, maybe >>>>>>> configurable? >>>>>>> >>>>>>> -hilmar >>>>>>> >>>>>>> On Thursday, January 27, 2005, at 12:59 PM, Marc Logghe wrote: >>>>>>> >>>>>>>> Hi Genevieve, >>>>>>>> my posts to gmod-gbrowse@lists.sourceforge.net seem to get lost >>>>>>>> one way or another. >>>>>>>> >>>>>>>> Anyhow, I am afraid I will not be able to help you out ... >>>>>>>> I can only make a few remarks. >>>>>>>> As far as I understand your pseudomonas biosql database >>>>>>>> contains 1 bioentry with the accession NC_004578 and sequence >>>>>>>> length 6397126 bp. A query in the gbrowse/biosql combination >>>>>>>> will only work for that accession and will return the complete >>>>>>>> segment. So I guess you get a kind of timeout because the the >>>>>>>> fetching of the bioentry from biosql takes too long. >>>>>>>> Also, as far as I know, it is not possible to query for >>>>>>>> features residing on that segment, e.g. the gene PSPTO0041. >>>>>>>> That is because gbrowse/biosql will only look for the bioentry >>>>>>>> in biosql with the accession number PSPTO0041 and not the gene >>>>>>>> feature with that locus_tag ! >>>>>>>> This is probably not the behaviour you want. >>>>>>>> An option I see, is that you convert the genbank record into >>>>>>>> gff and load that in gbrowse/chado or gbrowse/gff. >>>>>>>> I think genbank2gff3.pl is especially suited to do the >>>>>>>> conversion. Hope I am not terribly wrong here ... >>>>>>>> >>>>>>>> Regards, >>>>>>>> Marc >>>>>>>> >>>>>>>> >>>>>>>>> -----Original Message----- >>>>>>>>> From: Genevieve DeClerck [mailto:gad14@cornell.edu] >>>>>>>>> Sent: Thursday, January 27, 2005 6:14 PM >>>>>>>>> To: Marc Logghe >>>>>>>>> Cc: gmod-gbrowse@lists.sourceforge.net >>>>>>>>> Subject: Re: [Gmod-gbrowse] features not displaying >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> Right, thanks Marc - I lost that line when I created my conf >>>>>>>>> file from >>>>>>>>> scratch (from 06.biosql.conf) for the umpteenth time. With >>>>>>>>> that line (and init_code.pl) I can successfully get the cds in >>>>>>>>> the 'parkin' example biosql database to display! So I moved to >>>>>>>>> the next step and created a new biosql db and loaded it with >>>>>>>>> data that I'm more interested >>>>>>>>> in.. the gbk file from ncbi of Pseudomonas syringae features >>>>>>>>> (ftp://bio-mirror.net/biomirror/ncbigenomes/Bacteria/Pseudomon >>>>>>>>> as_syringae/NC_004578.gbk). >>>>>>>>> >>>>>>>>> >>>>>>>>> I seem to be encountering a similar problem as with the >>>>>>>>> example parkin >>>>>>>>> db previous to adding back that line - everything appears to >>>>>>>>> be operating correctly in the browser, no errors in the web >>>>>>>>> log, but no features appear for CDS's or anything else. >>>>>>>>> Translation frames, GC content and sequence display fine. >>>>>>>>> >>>>>>>>> I'm starting to think that there's something amiss with how >>>>>>>>> the NC_004578.gbk data is stored in the database... or >>>>>>>>> something that biosql/gbrowse doesn't like about it. However, >>>>>>>>> I do not see anything weird with the data when I browse >>>>>>>>> through it in mysql. THe conf file i'm >>>>>>>>> using for the NC_004578 db is pretty much the same as what I >>>>>>>>> used for the parkin db.. just the appropriate changes in the >>>>>>>>> db_args def. >>>>>>>>> >>>>>>>>> Any thoughts? >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> Genevieve >>>>>>>>> >>>>>>>>> Marc Logghe wrote: >>>>>>>>> >>>>>>>>>> Hi Genevieve, >>>>>>>>>> I am pretty sure it will be fixed when you adjust your conf >>>>>>>>> >>>>>>>>> like I suggested earlier. >>>>>>>>> >>>>>>>>> >>>>>>>>>> init_code = do "$main::CONF_DIR/init_code.pl"; >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> and put init_code.pl in your gbrowse.conf directory. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> *Bio::SeqFeature::Generic::attributes = >>>>>>>>> >>>>>>>>> \&Bio::SeqFeature::Generic::get_tag_values; >>>>>>>>> >>>>>>>>> >>>>>>>>>> *Bio::SeqFeature::Generic::method = >>>>>>>>> >>>>>>>>> \&Bio::SeqFeature::Generic::primary_tag; >>>>>>>>> >>>>>>>>> >>>>>>>>>> *Bio::SeqFeature::Generic::type = sub { >>>>>>>>>> my $feat = shift; >>>>>>>>>> my ($method) = $feat->primary_tag; >>>>>>>>>> my ($source) = $feat->source_tag; >>>>>>>>>> return $method; >>>>>>>>>> }; >>>>>>>>>> *Bio::SeqFeature::Generic::name = sub { >>>>>>>>>> my $feat = shift; >>>>>>>>>> my $name = eval {($feat->get_tag_values('name'))[0]}; >>>>>>>>>> $name ||= eval {($feat->get_tag_values('label'))[0]}; >>>>>>>>>> $name ||= eval {($feat->get_tag_values('db_xref'))[0]}; >>>>>>>>>> # $name ||= 'unknown'; >>>>>>>>>> print STDERR "name = $name\n"; >>>>>>>>>> return $name; >>>>>>>>>> } >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> I tested it by commenting out the init_code line in my conf >>>>>>>>> >>>>>>>>> and I have the same things happening as you mention: no >>>>>>>>> features show up, no errors in the log. >>>>>>>>> >>>>>>>>> >>>>>>>>>> ML >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> Hi, >>>>>>>>>>> >>>>>>>>>>> I can't for the life of me figure out why features/glyphs >>>>>>>>>>> are not displaying in gbrowse. Everything else in the >>>>>>>>>>> browser page is displaying >>>>>>>>>>> fine - the header section, the footer, etc. A couple of >>>>>>>>>>> things display >>>>>>>>>>> ok in the feature window... GC Content, Translation fwd and >>>>>>>>>>> rev (including DNA sequence when zoomed all the way down). >>>>>>>>>>> But no real features, such as CDS, are displayed. The CDS >>>>>>>>>>> track has a label, "CDS," >>>>>>>>>>> but the rest is just plain empty, where I know there should >>>>>>>>>>> be a feature. >>>>>>>>>>> >>>>>>>>>>> I have gbrowse 1.62 running with a biosql-mysql database >>>>>>>>> >>>>>>>>> loaded with >>>>>>>>> >>>>>>>>> >>>>>>>>>>> bioperl-db example data file 'parkin.gb', which has one CDS. >>>>>>>>>>> [I just got >>>>>>>>>>> this setup working yesterday, thanks to help from this list >>>>>>>>>>> and BioSQL-l >>>>>>>>>>> - see posts from jan 25 2005: "gbrowse on top of biosql"]. >>>>>>>>>>> There are no >>>>>>>>>>> errors in the web error log or the mysql log. I triple >>>>>>>>>>> checked that the >>>>>>>>>>> parkin data is actually in the database and it is. >>>>>>>>>>> >>>>>>>>>>> ..I'm thinking there must be something wrong with my gbrowse >>>>>>>>>>> conf file >>>>>>>>>>> for this database.. in particular in the track section. But >>>>>>>>>>> if that were >>>>>>>>>>> the case, wouldn't I be seeing errors in my httpd error >>>>>>>>> >>>>>>>>> log? The conf >>>>>>>>> >>>>>>>>> >>>>>>>>>>> file i have is almost an exact copy of a conf file that i've >>>>>>>>>>> seen referred to in the docs: 06.biosql.conf. The track >>>>>>>>>>> stanzas look reasonable, going from info in docs and >>>>>>>>>>> tutorial. How do I debug the conf file?? >>>>>>>>>>> Or should I be looking somewhere else? >>>>>>>>>>> >>>>>>>>>>> My biosql.conf file is pasted below. >>>>>>>>>>> >>>>>>>>>>> Any clues much appreciated. >>>>>>>>>>> >>>>>>>>>>> Thanks, >>>>>>>>>>> Genevieve >>>>>>>>>>> >>>>>>>>>>> #************** biosql.conf ***************** >>>>>>>>>>> >>>>>>>>>>> [GENERAL] >>>>>>>>>>> description = biosql >>>>>>>>>>> db_adaptor = Bio::DB::Das::BioSQL >>>>>>>>>>> db_args = driver mysql >>>>>>>>>>> dbname biosql >>>>>>>>>>> namespace genbank >>>>>>>>>>> host localhost >>>>>>>>>>> user nobody >>>>>>>>>>> pass '' >>>>>>>>>>> >>>>>>>>>>> plugins = SequenceDumper FastaDumper RestrictionAnnotator >>>>>>>>>>> >>>>>>>>>>> # Web site configuration info >>>>>>>>>>> stylesheet = /gbrowse/gbrowse.css >>>>>>>>>>> buttons = /gbrowse/images/buttons >>>>>>>>>>> tmpimages = /gbrowse/tmp >>>>>>>>>>> >>>>>>>>>>> # where to link to when user clicks in detaild view >>>>>>>>>>> #link = >>>>>>>>>>> http://localhost/perl/gbrowse?ref=$ref;start=$start;stop=$en >>>>>>>>>>> d link = AUTO >>>>>>>>>>> >>>>>>>>>>> # what image widths to offer >>>>>>>>>>> image widths = 450 640 800 1024 >>>>>>>>>>> >>>>>>>>>>> # default width of detailed view (pixels) >>>>>>>>>>> default width = 800 >>>>>>>>>>> default features = CDS >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> # max and default segment sizes for detailed view >>>>>>>>>>> max segment = 500000 >>>>>>>>>>> default segment = 50000 >>>>>>>>>>> >>>>>>>>>>> # zoom levels >>>>>>>>>>> zoom levels = 100 200 1000 2000 5000 10000 20000 40000 >>>>>>>>>>> 100000 200000 >>>>>>>>>>> 500000 1000000 >>>>>>>>>>> low res = 200000 >>>>>>>>>>> >>>>>>>>>>> # colors of the overview, detailed map and key >>>>>>>>>>> overview bgcolor = wheat >>>>>>>>>>> detailed bgcolor = white >>>>>>>>>>> key bgcolor = beige >>>>>>>>>>> >>>>>>>>>>> footer =
>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>>
>>>>>>>>>>> For the source code for this browser, see the >>>>>>>>>> href="http://www.gmod.org"> >>>>>>>>>>> Generic Model Organism Database Project. For other >>>>>>>>>>> questions, send >>>>>>>>>>> mail to >>>>>>>>>> href="mailto:lstein@cshl.org">lstein@cshl.org.
>>>>>>>>>>>
>>>>>>>>>>> 
$Id: 06.biosql.conf,v 1.1 2003/06/26 12:32:23
>>>>>>>>>>> lstein Exp $
>>>>>>>>>>> >>>>>>>>>>> # examples to show in the introduction >>>>>>>>>>> examples = AB019558 >>>>>>>>>>> >>>>>>>>>>> # "automatic" classes to try when an unqualified identifier >>>>>>>>>>> is given automatic classes = Accession >>>>>>>>>>> >>>>>>>>>>> [TRACK DEFAULTS] >>>>>>>>>>> glyph = generic >>>>>>>>>>> height = 8 >>>>>>>>>>> bgcolor = cyan >>>>>>>>>>> fgcolor = cyan >>>>>>>>>>> fontcolor = black >>>>>>>>>>> font2color = blue >>>>>>>>>>> label density = 25 >>>>>>>>>>> bump density = 100 >>>>>>>>>>> description = 1 >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> ############################################################ >>>>>>>>>>> ## ################## >>>>>>>>>>> # the remainder of the sections configure particular >>>>>>>>>>> features to sho >>>>>>>>>>> ############################################################ >>>>>>>>>>> ## ################## >>>>>>>>>>> >>>>>>>>>>> [CDS] >>>>>>>>>>> feature = CDS >>>>>>>>>>> glyph = transcript2 >>>>>>>>>>> #glyph = generic >>>>>>>>>>> bgcolor = turquoise >>>>>>>>>>> fgcolor = black >>>>>>>>>>> height = 10 >>>>>>>>>>> connector = solid >>>>>>>>>>> key = CDS >>>>>>>>>>> >>>>>>>>>>> [REPEAT] >>>>>>>>>>> feature = repeat_region >>>>>>>>>>> glyph = generic >>>>>>>>>>> bgcolor = red >>>>>>>>>>> height = 10 >>>>>>>>>>> description = 1 >>>>>>>>>>> key = Repeat regions >>>>>>>>>>> >>>>>>>>>>> [TranslationF] >>>>>>>>>>> glyph = translation >>>>>>>>>>> global feature = 1 >>>>>>>>>>> frame0 = cadetblue >>>>>>>>>>> frame1 = blue >>>>>>>>>>> frame2 = darkblue >>>>>>>>>>> height = 20 >>>>>>>>>>> fgcolor = purple >>>>>>>>>>> strand = +1 >>>>>>>>>>> translation = 3frame >>>>>>>>>>> key = 3-frame translation (forward) >>>>>>>>>>> >>>>>>>>>>> [DNA/GC Content] >>>>>>>>>>> glyph = dna >>>>>>>>>>> global feature = 1 >>>>>>>>>>> height = 40 >>>>>>>>>>> do_gc = 1 >>>>>>>>>>> fgcolor = red >>>>>>>>>>> axis_color = blue >>>>>>>>>>> >>>>>>>>>>> [TranslationR] >>>>>>>>>>> glyph = translation >>>>>>>>>>> global feature = 1 >>>>>>>>>>> frame0 = darkred >>>>>>>>>>> frame1 = red >>>>>>>>>>> frame2 = crimson >>>>>>>>>>> height = 20 >>>>>>>>>>> fgcolor = blue >>>>>>>>>>> strand = -1 >>>>>>>>>>> translation = 3frame >>>>>>>>>>> key = 3-frame translation (reverse) >>>>>>>>>>> >>>>>>>>>>> #**************************************************** >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> ------------------------------------------------------- >>>>>>>>>>> This SF.Net email is sponsored by: IntelliVIEW -- >>>>>>>>>>> Interactive Reporting >>>>>>>>>>> Tool for open source databases. Create drag-&-drop reports. >>>>>>>>> >>>>>>>>> Save time >>>>>>>>> >>>>>>>>> >>>>>>>>>>> by over 75%! Publish reports on the web. Export to DOC, >>>>>>>>> >>>>>>>>> XLS, RTF, etc. >>>>>>>>> >>>>>>>>> >>>>>>>>>>> Download a FREE copy at >>>>>>>>>>> http://www.intelliview.com/go/osdn_nl >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> Gmod-gbrowse mailing list >>>>>>>>>>> Gmod-gbrowse@lists.sourceforge.net >>>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>>>>>>> >>>>>>>> ------------------------------------------------------- >>>>>>>> This SF.Net email is sponsored by: IntelliVIEW -- Interactive >>>>>>>> Reporting Tool for open source databases. Create drag-&-drop >>>>>>>> reports. Save time by over 75%! Publish reports on the web. >>>>>>>> Export to DOC, XLS, RTF, etc. Download a FREE copy at >>>>>>>> http://www.intelliview.com/go/osdn_nl >>>>>>>> _______________________________________________ >>>>>>>> Gmod-gbrowse mailing list >>>>>>>> Gmod-gbrowse@lists.sourceforge.net >>>>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>>>>> >>>>>> -- >>>>>> Lincoln D. Stein >>>>>> Cold Spring Harbor Laboratory >>>>>> 1 Bungtown Road >>>>>> Cold Spring Harbor, NY 11724 >>>>>> >>>>>> NOTE: Please copy Sandra Michelsen on >>>>>> all emails regarding scheduling and other time-critical topics. >>>> >>>> >>> >>> >>> >>> ------------------------------------------------------- >>> This SF.Net email is sponsored by: IntelliVIEW -- Interactive >>> Reporting >>> Tool for open source databases. Create drag-&-drop reports. Save time >>> by over 75%! Publish reports on the web. Export to DOC, XLS, RTF, >>> etc. >>> Download a FREE copy at http://www.intelliview.com/go/osdn_nl >>> _______________________________________________ >>> Gmod-gbrowse mailing list >>> Gmod-gbrowse@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From allenday at ucla.edu Wed Feb 2 14:22:33 2005 From: allenday at ucla.edu (Allen Day) Date: Wed Feb 2 14:21:42 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying In-Reply-To: References: Message-ID: On Wed, 2 Feb 2005, Marc Logghe wrote: > > 3) Bio::SeqFeature::Generic::get_tag_values does not exist > > anymore: Bio::SeqFeature::Geneneric does not inherit from > > Bio::AnnotatableI which implements that method, which is bad > > (can it pass the tests, then ?). I don't know what the > > situation is in bioperl-live HEAD. > > Correction: get_tag_values is inherited from Bio::AnnotatableI via Bio::SeqFeatureI. > > So, this error could be fixed by changing (in the 'horrible patch section' of package Bio::DB::Das::BioSQL bugfix-release) > *Bio::SeqFeature::Generic::attributes = \&Bio::SeqFeature::Generic::get_tag_values; > to: > *Bio::SeqFeature::Generic::attributes = \&Bio::AnnotatableI::get_tag_values; > > Making it even more horrible ;-) > But it works. > It seems that in older bioperl-live releases there actually *was* a Bio::SeqFeature::Generic::get_tag_values sub making the original hack work. In release 1.5.0 this sub was gone, breaking the hack. There was such a method, but I moved it to Bio/AnnotationI. All the *_tag_* methods now live there, and are inherited by Bio::SeqFeatureI, with Bio::SeqFeature::* inheriting from that. > Now, I'll try to tackle the double features problem. Status can be followed at > http://biologghe.homelinux.org:4380/cgi-bin/gbrowse/biosql?name=NP_491141%3A1..629;source=biosql;width=800;version=100;label=CDS-REGION-PROTEIN > (beware, it is a slow computer and a slow connection) > > Cheers, > Marc > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From cjm at fruitfly.org Wed Feb 2 16:15:20 2005 From: cjm at fruitfly.org (Chris Mungall) Date: Wed Feb 2 16:11:40 2005 Subject: [Bioperl-l] The Feature changes which have broken compatibility In-Reply-To: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> References: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> Message-ID: On Wed, 2 Feb 2005, Jason Stajich wrote: > This whole changing of core SeqFeature::Generic objects is pretty > disturbing. agreed > Why can't we do this: > - Bio::SeqIO, Bio::Tools::GFF, Bio::SeqFeature::Generic all remain the > same as they were in 1.4. We back out the major changes to the > inheritance - figure out whether or not things should be > Bio::AnnotatableI. > > - Bio::FeatureIO make Bio::SeqFeature::Annotations which can have > whatever interface and remove the "features your find annoying" without > breaking the existing code which relied on things. > > The burden is on the person implementing new code NOT to break the > existing interface which we want to be backwards compatible unless > there is some reason not to..... There is no good reason scripts that > work with bioperl-1.4 can't work with 1.5 (or 1.6). > > Many people will continue to use Bio;:Tools::GFF - for those who want > GFF3 and SO validation, they should use Bio::FeatureIO. Lots of people > are happy to continue in their blissful state of not using SO (and not > installing Graph::Directed in order to parse a genbank file). I will definitely continue to use Bio::Tools::GFF so long as Bio::FeatureIO::gff continues its insanity I'm not sure how many people are aware how this works - here is what happens under the hood: 1) Bio::FeatureIO::gff is initialized. This entails establishing a connection to sourceforge to download the sequence ontology. This of course will not work if you are offline. Even if you are online, it doesn't seem to work for me and is of course dependent on the vagaries of whether the sourceforge & the sourceforge mirror is working. Even if this all works, there is an initial start-up lag which may be unacceptable to some applications. Also, not everyone using bioperl is in a country with fast internet access and local-ish sourceforge mirror. In addition, it hardcodes metadata about the ontology in bioperl (see Bio::Ontology::DocumentRegistry) which is asking for trouble. In addition, it downloads the ontology in a legacy deprecated format, because that's all bioperl currently supports. Also asking for trouble further down the line Why is it doing all this? Purely in order to check that the feature types provided in the GFF file are valid SOFA terms. Look, I already know all the GFF3 files I want to parse have valid SOFA types. If I want to check, I'll do this myself thanks, I don't want bioperl to secretly do it for me in a hokey way that requires me being online and in the USA, every single time I parse a file. In fact, there is already a script for validating a GFF3 file, in the SO software repository (which uses Bio::Tools::GFF) which does a much more thorough job, checking feature parentage too. What happened to modularity? You know, parsing in a parser, verification in a verifier. 2) it starts parsing features, assigning Bio::Ontology::Term objects to each feature (the type). This entails having Graph::Directed, which is what Jason is alluding to. Not that bad in itself, but unneccessary for the majority of apps that just want to parse GFF Is it just me that thinks this is madness? Can someone please make it stop? I will continue to use Bio::Tools::GFF while FeatureIO continues to be so daft. However, B::T::GFF is a bit rusty. It would be nice to have some of the features of FeatureIO::gff, and it makes sense to have a (sensible) FeatureIO framework > The fact that Bio::SeqIO really expected Bio::SeqFeature::Generic > objects instead of Bio::SeqFeatureI objects probably meant that we > should be updating Bio::SeqFeatureI interface not just breaking things. > We might need to improve Bio::SeqIO/Bio::SeqFeatureI to insure > Bio::SeqFeatureI is general enough for the two objects. I have to admit I'm kind of confused about all these new changes involving the tag value system and AnnotationI. Probably I'm just too lazy to try and figure it out. I'm just sitting back and hoping someone fixes it all. Sorry. I will stick in a vote for things returning to where they were 1.4 days. I like get_tag_values. It's simple and satisfactory for everything I want to use it for. Bio::Annotation scares me a bit. I'm not totally sure what the rationale for changing things is. That's not a very rational argument is it? Sorry. I'm guessing I'm in agreement with a lot of bioperl users though... > It really makes me uncomfortable how sloppy this appears to people > using the toolkit - many of us have worked really hard to maintain > backwards compatibility - dealing with the "annoying features" and > somewhat legacy function names because someone wrote them before us and > we didn't want to break people's scripts. When making lots of changes > they really need to be either well tested (with additional tests > perhaps) OR they need to be insulated from existing code. > > I really think we need to branch and back out these changes so we can > provide a 1.5.1 release which most of the API is compatible with 1.4 > scripts, and potentially plan to release 1.6 off this branch. I cannot > be the release master, someone else must step up to be the coordinator > and help with QA. I second this plan. If someone wants to try and unify Bio::Annotation with get_tag_values it'd be nice if this happened off on a branch somewhere, then contacted us all if and when they have something that works, is simple to understand and doesn't break code. Kudos to Jason and all the previous release masters and coordinators - it's a tough job. Maybe there's a way to make this job easier, such as encouraging (forcing?) experimental stuff to happen off-branch, designating a certain collection of modules as 'stable' and encouraging those wishing to make any modification to mail the list in advance, etc... > -jason > > -- > Jason Stajich > jason.stajich at duke.edu > http://www.duke.edu/~jes12/ > On Feb 2, 2005, at 5:52 AM, Marc Logghe wrote: > > > Allright, status update about my little 'gbrowse on top of > > biosql'-project. > > > > I have prepared a fresh linux box with bioperl-live tagged > > bioperl-release-1-5-0, bioperl-db and bioperl-schema HEAD, > > release_1_62-bugfixes Generic-Genome-Browser. > > I loaded some genbank proteins in biosql (Thanks Hilmar for helping me > > out !) and adapted 06.biosql.conf. > > Three observations that at this (early) point can be made: > > 1) init_code (providing some missing methods in order to make > > Bio::SeqFeature::Generic and Bio::Graphics::Feature more compliant) is > > not needed anymore, which is good (Thanks Lincoln) > > 2) all features are displayed in duplicate (I'll flesh that one out). > > This confirms the things Genevieve is seeing. > > 3) Bio::SeqFeature::Generic::get_tag_values does not exist anymore: > > Bio::SeqFeature::Geneneric does not inherit from Bio::AnnotatableI > > which implements that method, which is bad (can it pass the tests, > > then ?). I don't know what the situation is in bioperl-live HEAD. > > > > Cheers, > > Marc > > > > > >> -----Original Message----- > >> From: gmod-gbrowse-admin@lists.sourceforge.net > >> [mailto:gmod-gbrowse-admin@lists.sourceforge.net]On Behalf Of > >> Genevieve > >> DeClerck > >> Sent: Tuesday, February 01, 2005 10:57 PM > >> To: gmod-gbrowse@lists.sourceforge.net > >> Cc: Lincoln Stein > >> Subject: Re: [Gmod-gbrowse] features not displaying > >> > >> > >> > >> I've been playing around with the NC_004578.gbk (P.syringae DC3000 > >> chromosome) file I got from ncbi that I've been trying to > >> display in a > >> biosql/gbrowse setup -- I got some of the data to > >> partically display.. > >> > >> I found that if I remove the whole genome sequence (ORIGIN record) at > >> the end of NC_004578.gbk so that just the feature records remain, and > >> load this into a fresh biosql db, CDS's display in GBrowse. But there > >> are a couple of problems with what's displayed: > >> > >> 1) no features with a stop coordinate > 500,000 are shown, so > >> for DC3000 > >> only about a 1/6 of the genome features are shown; > >> > >> 2) all the CDS features are duplicated.. there are two > >> colored bars for > >> each CDS. When you mouse over dulpicate bars they both > >> display something > >> like: "CDS: :813..1916". I thought this might have something > >> to do with > >> the fact that in the gbk file, most if not all of the CDS > >> records have > >> corresponding 'gene' records with the same exact coordinates, but the > >> Genes have their own duplication problem... the gene records also > >> display in duplicate ... mousing over the gene glyphs in the > >> same region > >> as the CDS above shows this: "Gene: :813..1916". > >> > >> Another test I performed with the NC_004578.gbk file is that > >> I severely > >> truncated the whole genome sequence at the end of the file.. removing > >> all sequence after the '7141' line. And I removed all features in the > >> file that had a coord > 7000. This left 4 CDSs and 4 genes. The file > >> loads fine and displays all 4 features.. in duplicate. So > >> when selecting > >> the Landmark, "NC_004578:1..7200", all features are visible.. > >> 16 glyphs > >> total due to duplication. > >> > >> The web log is not showing any errors of note.. > >> > >> -Genevieve > >> > >> > >> > >> Lincoln Stein wrote: > >> > >>> Sounds like Simon and I will have to work through this. > >> Probably the > >>> display_name needs to get set more broadly. > >>> > >>> Lincoln > >>> > >>> On Friday 28 January 2005 07:30 pm, Hilmar Lapp wrote: > >>> > >>>> I haven't had a chance yet to look at this in the code so I am and > >>>> probably sound a bit confused. In order to display something in > >>>> gbrowse wouldn't you need coordinates? > >>>> > >>>> If what the code does is to fetch sequences, then they don't have > >>>> coordinates - only their feature(s) do/does (which are > >>>> auto-retrieved along with the seqs). This means that you'd have to > >>>> have loaded the database with sequence entries whose feature table > >>>> gives the coordinates of the *sequence*. Usually the feature table > >>>> will give the coordinates of the features on the sequence, no? > >>>> (unless it's a remote location) > >>>> > >>>> Assuming in your question you mean retrieving features by name, the > >>>> naive answer is similar to how you do this for seq by accession, > >>>> except you ask for the SeqFeatureI adaptor, provide a SeqFeatureI > >>>> factory, specify SeqFeatureI in the collections, and constrain by > >>>> the display_name property of the SeqFeatureI entity. > >>>> > >>>> However, this probably won't work for most dataload situations > >>>> because bioperl doesn't set the display_name property in any of its > >>>> rich format parsers. The corresponding column is optional in > >>>> biosql, so there's no error or warning from that. > >>>> > >>>> So, if your name or identifier to search by is the value of a > >>>> feature tag, technically it will be in the value column of the > >>>> seqfeature_qualifier_value table unless you massaged the data > >>>> structure prior to upload. You then need to set up a BioQuery with > >>>> SeqFeatureI and Bio::Annotation::SimpleValue as entities to be > >>>> joined, and constrain by value of the latter. This may mean nothing > >>>> to most, but I hope Simon has some idea on what I'm talking about. > >>>> > >>>> -hilmar > >>>> > >>>> On Jan 28, 2005, at 12:14 PM, Lincoln Stein wrote: > >>>> > >>>>> There's a central call in the gbrowse/biosql adaptor called > >>>>> get_feature_by_name() that calls > >>>>> biosql->fetch_Seq_by_accession(). What it should do is to look > >>>>> for seqfeatures if the > >>>>> fetch_Seq_by_accession() doesn't return a result. > >>>>> > >>>>> This should be a simple fix . Simon, HIlmar, what is the > >>>>> appropriate biosql call to retrieve seqfeatures? > >>>>> > >>>>> Lincoln > >>>>> > >>>>> On Friday 28 January 2005 02:26 pm, Hilmar Lapp wrote: > >>>>> > >>>>>> So how do others do this then on biosql? Simon ran a benchmark > >>>>>> that included biosql. Ah - that was on an artifical dataset, > >>>>>> right? I thought Simon's been running gbrowse on top of biosql > >>>>>> for some demo site on real data? > >>>>>> > >>>>>> So this may need more work then in that the bridging code should > >>>>>> query either bioentry, or seqfeature, or possibly both, maybe > >>>>>> configurable? > >>>>>> > >>>>>> -hilmar > >>>>>> > >>>>>> On Thursday, January 27, 2005, at 12:59 PM, Marc Logghe wrote: > >>>>>> > >>>>>>> Hi Genevieve, > >>>>>>> my posts to gmod-gbrowse@lists.sourceforge.net seem to get lost > >>>>>>> one way or another. > >>>>>>> > >>>>>>> Anyhow, I am afraid I will not be able to help you out ... > >>>>>>> I can only make a few remarks. > >>>>>>> As far as I understand your pseudomonas biosql database > >>>>>>> contains 1 bioentry with the accession NC_004578 and sequence > >>>>>>> length 6397126 bp. A query in the gbrowse/biosql combination > >>>>>>> will only work for that accession and will return the complete > >>>>>>> segment. So I guess you get a kind of timeout because the the > >>>>>>> fetching of the bioentry from biosql takes too long. > >>>>>>> Also, as far as I know, it is not possible to query for > >>>>>>> features residing on that segment, e.g. the gene PSPTO0041. > >>>>>>> That is because gbrowse/biosql will only look for the bioentry > >>>>>>> in biosql with the accession number PSPTO0041 and not the gene > >>>>>>> feature with that locus_tag ! > >>>>>>> This is probably not the behaviour you want. > >>>>>>> An option I see, is that you convert the genbank record into > >>>>>>> gff and load that in gbrowse/chado or gbrowse/gff. > >>>>>>> I think genbank2gff3.pl is especially suited to do the > >>>>>>> conversion. Hope I am not terribly wrong here ... > >>>>>>> > >>>>>>> Regards, > >>>>>>> Marc > >>>>>>> > >>>>>>> > >>>>>>>> -----Original Message----- > >>>>>>>> From: Genevieve DeClerck [mailto:gad14@cornell.edu] > >>>>>>>> Sent: Thursday, January 27, 2005 6:14 PM > >>>>>>>> To: Marc Logghe > >>>>>>>> Cc: gmod-gbrowse@lists.sourceforge.net > >>>>>>>> Subject: Re: [Gmod-gbrowse] features not displaying > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> Right, thanks Marc - I lost that line when I created my conf > >>>>>>>> file from > >>>>>>>> scratch (from 06.biosql.conf) for the umpteenth time. With > >>>>>>>> that line (and init_code.pl) I can successfully get the cds in > >>>>>>>> the 'parkin' example biosql database to display! So I moved to > >>>>>>>> the next step and created a new biosql db and loaded it with > >>>>>>>> data that I'm more interested > >>>>>>>> in.. the gbk file from ncbi of Pseudomonas syringae features > >>>>>>>> (ftp://bio-mirror.net/biomirror/ncbigenomes/Bacteria/Pseudomon > >>>>>>>> as_syringae/NC_004578.gbk). > >>>>>>>> > >>>>>>>> > >>>>>>>> I seem to be encountering a similar problem as with the > >>>>>>>> example parkin > >>>>>>>> db previous to adding back that line - everything appears to > >>>>>>>> be operating correctly in the browser, no errors in the web > >>>>>>>> log, but no features appear for CDS's or anything else. > >>>>>>>> Translation frames, GC content and sequence display fine. > >>>>>>>> > >>>>>>>> I'm starting to think that there's something amiss with how > >>>>>>>> the NC_004578.gbk data is stored in the database... or > >>>>>>>> something that biosql/gbrowse doesn't like about it. However, > >>>>>>>> I do not see anything weird with the data when I browse > >>>>>>>> through it in mysql. THe conf file i'm > >>>>>>>> using for the NC_004578 db is pretty much the same as what I > >>>>>>>> used for the parkin db.. just the appropriate changes in the > >>>>>>>> db_args def. > >>>>>>>> > >>>>>>>> Any thoughts? > >>>>>>>> > >>>>>>>> Thanks, > >>>>>>>> Genevieve > >>>>>>>> > >>>>>>>> Marc Logghe wrote: > >>>>>>>> > >>>>>>>>> Hi Genevieve, > >>>>>>>>> I am pretty sure it will be fixed when you adjust your conf > >>>>>>>> > >>>>>>>> like I suggested earlier. > >>>>>>>> > >>>>>>>> > >>>>>>>>> init_code = do "$main::CONF_DIR/init_code.pl"; > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> and put init_code.pl in your gbrowse.conf directory. > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> *Bio::SeqFeature::Generic::attributes = > >>>>>>>> > >>>>>>>> \&Bio::SeqFeature::Generic::get_tag_values; > >>>>>>>> > >>>>>>>> > >>>>>>>>> *Bio::SeqFeature::Generic::method = > >>>>>>>> > >>>>>>>> \&Bio::SeqFeature::Generic::primary_tag; > >>>>>>>> > >>>>>>>> > >>>>>>>>> *Bio::SeqFeature::Generic::type = sub { > >>>>>>>>> my $feat = shift; > >>>>>>>>> my ($method) = $feat->primary_tag; > >>>>>>>>> my ($source) = $feat->source_tag; > >>>>>>>>> return $method; > >>>>>>>>> }; > >>>>>>>>> *Bio::SeqFeature::Generic::name = sub { > >>>>>>>>> my $feat = shift; > >>>>>>>>> my $name = eval {($feat->get_tag_values('name'))[0]}; > >>>>>>>>> $name ||= eval {($feat->get_tag_values('label'))[0]}; > >>>>>>>>> $name ||= eval {($feat->get_tag_values('db_xref'))[0]}; > >>>>>>>>> # $name ||= 'unknown'; > >>>>>>>>> print STDERR "name = $name\n"; > >>>>>>>>> return $name; > >>>>>>>>> } > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> I tested it by commenting out the init_code line in my conf > >>>>>>>> > >>>>>>>> and I have the same things happening as you mention: no > >>>>>>>> features show up, no errors in the log. > >>>>>>>> > >>>>>>>> > >>>>>>>>> ML > >>>>>>>>> > >>>>>>>>> > >>>>>>>>>> Hi, > >>>>>>>>>> > >>>>>>>>>> I can't for the life of me figure out why features/glyphs > >>>>>>>>>> are not displaying in gbrowse. Everything else in the > >>>>>>>>>> browser page is displaying > >>>>>>>>>> fine - the header section, the footer, etc. A couple of > >>>>>>>>>> things display > >>>>>>>>>> ok in the feature window... GC Content, Translation fwd and > >>>>>>>>>> rev (including DNA sequence when zoomed all the way down). > >>>>>>>>>> But no real features, such as CDS, are displayed. The CDS > >>>>>>>>>> track has a label, "CDS," > >>>>>>>>>> but the rest is just plain empty, where I know there should > >>>>>>>>>> be a feature. > >>>>>>>>>> > >>>>>>>>>> I have gbrowse 1.62 running with a biosql-mysql database > >>>>>>>> > >>>>>>>> loaded with > >>>>>>>> > >>>>>>>> > >>>>>>>>>> bioperl-db example data file 'parkin.gb', which has one CDS. > >>>>>>>>>> [I just got > >>>>>>>>>> this setup working yesterday, thanks to help from this list > >>>>>>>>>> and BioSQL-l > >>>>>>>>>> - see posts from jan 25 2005: "gbrowse on top of biosql"]. > >>>>>>>>>> There are no > >>>>>>>>>> errors in the web error log or the mysql log. I triple > >>>>>>>>>> checked that the > >>>>>>>>>> parkin data is actually in the database and it is. > >>>>>>>>>> > >>>>>>>>>> ..I'm thinking there must be something wrong with my gbrowse > >>>>>>>>>> conf file > >>>>>>>>>> for this database.. in particular in the track section. But > >>>>>>>>>> if that were > >>>>>>>>>> the case, wouldn't I be seeing errors in my httpd error > >>>>>>>> > >>>>>>>> log? The conf > >>>>>>>> > >>>>>>>> > >>>>>>>>>> file i have is almost an exact copy of a conf file that i've > >>>>>>>>>> seen referred to in the docs: 06.biosql.conf. The track > >>>>>>>>>> stanzas look reasonable, going from info in docs and > >>>>>>>>>> tutorial. How do I debug the conf file?? > >>>>>>>>>> Or should I be looking somewhere else? > >>>>>>>>>> > >>>>>>>>>> My biosql.conf file is pasted below. > >>>>>>>>>> > >>>>>>>>>> Any clues much appreciated. > >>>>>>>>>> > >>>>>>>>>> Thanks, > >>>>>>>>>> Genevieve > >>>>>>>>>> > >>>>>>>>>> #************** biosql.conf ***************** > >>>>>>>>>> > >>>>>>>>>> [GENERAL] > >>>>>>>>>> description = biosql > >>>>>>>>>> db_adaptor = Bio::DB::Das::BioSQL > >>>>>>>>>> db_args = driver mysql > >>>>>>>>>> dbname biosql > >>>>>>>>>> namespace genbank > >>>>>>>>>> host localhost > >>>>>>>>>> user nobody > >>>>>>>>>> pass '' > >>>>>>>>>> > >>>>>>>>>> plugins = SequenceDumper FastaDumper RestrictionAnnotator > >>>>>>>>>> > >>>>>>>>>> # Web site configuration info > >>>>>>>>>> stylesheet = /gbrowse/gbrowse.css > >>>>>>>>>> buttons = /gbrowse/images/buttons > >>>>>>>>>> tmpimages = /gbrowse/tmp > >>>>>>>>>> > >>>>>>>>>> # where to link to when user clicks in detaild view > >>>>>>>>>> #link = > >>>>>>>>>> http://localhost/perl/gbrowse?ref=$ref;start=$start;stop=$en > >>>>>>>>>> d link = AUTO > >>>>>>>>>> > >>>>>>>>>> # what image widths to offer > >>>>>>>>>> image widths = 450 640 800 1024 > >>>>>>>>>> > >>>>>>>>>> # default width of detailed view (pixels) > >>>>>>>>>> default width = 800 > >>>>>>>>>> default features = CDS > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> # max and default segment sizes for detailed view > >>>>>>>>>> max segment = 500000 > >>>>>>>>>> default segment = 50000 > >>>>>>>>>> > >>>>>>>>>> # zoom levels > >>>>>>>>>> zoom levels = 100 200 1000 2000 5000 10000 20000 40000 > >>>>>>>>>> 100000 200000 > >>>>>>>>>> 500000 1000000 > >>>>>>>>>> low res = 200000 > >>>>>>>>>> > >>>>>>>>>> # colors of the overview, detailed map and key > >>>>>>>>>> overview bgcolor = wheat > >>>>>>>>>> detailed bgcolor = white > >>>>>>>>>> key bgcolor = beige > >>>>>>>>>> > >>>>>>>>>> footer =
> >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>>
> >>>>>>>>>> For the source code for this browser, see the >>>>>>>>>> href="http://www.gmod.org"> > >>>>>>>>>> Generic Model Organism Database Project. For other > >>>>>>>>>> questions, send > >>>>>>>>>> mail to >>>>>>>>>> href="mailto:lstein@cshl.org">lstein@cshl.org.
> >>>>>>>>>>
> >>>>>>>>>> 
$Id: 06.biosql.conf,v 1.1 2003/06/26 12:32:23
> >>>>>>>>>> lstein Exp $
> >>>>>>>>>> > >>>>>>>>>> # examples to show in the introduction > >>>>>>>>>> examples = AB019558 > >>>>>>>>>> > >>>>>>>>>> # "automatic" classes to try when an unqualified identifier > >>>>>>>>>> is given automatic classes = Accession > >>>>>>>>>> > >>>>>>>>>> [TRACK DEFAULTS] > >>>>>>>>>> glyph = generic > >>>>>>>>>> height = 8 > >>>>>>>>>> bgcolor = cyan > >>>>>>>>>> fgcolor = cyan > >>>>>>>>>> fontcolor = black > >>>>>>>>>> font2color = blue > >>>>>>>>>> label density = 25 > >>>>>>>>>> bump density = 100 > >>>>>>>>>> description = 1 > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> ############################################################ > >>>>>>>>>> ## ################## > >>>>>>>>>> # the remainder of the sections configure particular > >>>>>>>>>> features to sho > >>>>>>>>>> ############################################################ > >>>>>>>>>> ## ################## > >>>>>>>>>> > >>>>>>>>>> [CDS] > >>>>>>>>>> feature = CDS > >>>>>>>>>> glyph = transcript2 > >>>>>>>>>> #glyph = generic > >>>>>>>>>> bgcolor = turquoise > >>>>>>>>>> fgcolor = black > >>>>>>>>>> height = 10 > >>>>>>>>>> connector = solid > >>>>>>>>>> key = CDS > >>>>>>>>>> > >>>>>>>>>> [REPEAT] > >>>>>>>>>> feature = repeat_region > >>>>>>>>>> glyph = generic > >>>>>>>>>> bgcolor = red > >>>>>>>>>> height = 10 > >>>>>>>>>> description = 1 > >>>>>>>>>> key = Repeat regions > >>>>>>>>>> > >>>>>>>>>> [TranslationF] > >>>>>>>>>> glyph = translation > >>>>>>>>>> global feature = 1 > >>>>>>>>>> frame0 = cadetblue > >>>>>>>>>> frame1 = blue > >>>>>>>>>> frame2 = darkblue > >>>>>>>>>> height = 20 > >>>>>>>>>> fgcolor = purple > >>>>>>>>>> strand = +1 > >>>>>>>>>> translation = 3frame > >>>>>>>>>> key = 3-frame translation (forward) > >>>>>>>>>> > >>>>>>>>>> [DNA/GC Content] > >>>>>>>>>> glyph = dna > >>>>>>>>>> global feature = 1 > >>>>>>>>>> height = 40 > >>>>>>>>>> do_gc = 1 > >>>>>>>>>> fgcolor = red > >>>>>>>>>> axis_color = blue > >>>>>>>>>> > >>>>>>>>>> [TranslationR] > >>>>>>>>>> glyph = translation > >>>>>>>>>> global feature = 1 > >>>>>>>>>> frame0 = darkred > >>>>>>>>>> frame1 = red > >>>>>>>>>> frame2 = crimson > >>>>>>>>>> height = 20 > >>>>>>>>>> fgcolor = blue > >>>>>>>>>> strand = -1 > >>>>>>>>>> translation = 3frame > >>>>>>>>>> key = 3-frame translation (reverse) > >>>>>>>>>> > >>>>>>>>>> #**************************************************** > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> ------------------------------------------------------- > >>>>>>>>>> This SF.Net email is sponsored by: IntelliVIEW -- > >>>>>>>>>> Interactive Reporting > >>>>>>>>>> Tool for open source databases. Create drag-&-drop reports. > >>>>>>>> > >>>>>>>> Save time > >>>>>>>> > >>>>>>>> > >>>>>>>>>> by over 75%! Publish reports on the web. Export to DOC, > >>>>>>>> > >>>>>>>> XLS, RTF, etc. > >>>>>>>> > >>>>>>>> > >>>>>>>>>> Download a FREE copy at > >>>>>>>>>> http://www.intelliview.com/go/osdn_nl > >>>>>>>>>> _______________________________________________ > >>>>>>>>>> Gmod-gbrowse mailing list > >>>>>>>>>> Gmod-gbrowse@lists.sourceforge.net > >>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >>>>>>> > >>>>>>> ------------------------------------------------------- > >>>>>>> This SF.Net email is sponsored by: IntelliVIEW -- Interactive > >>>>>>> Reporting Tool for open source databases. Create drag-&-drop > >>>>>>> reports. Save time by over 75%! Publish reports on the web. > >>>>>>> Export to DOC, XLS, RTF, etc. Download a FREE copy at > >>>>>>> http://www.intelliview.com/go/osdn_nl > >>>>>>> _______________________________________________ > >>>>>>> Gmod-gbrowse mailing list > >>>>>>> Gmod-gbrowse@lists.sourceforge.net > >>>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >>>>> > >>>>> -- > >>>>> Lincoln D. Stein > >>>>> Cold Spring Harbor Laboratory > >>>>> 1 Bungtown Road > >>>>> Cold Spring Harbor, NY 11724 > >>>>> > >>>>> NOTE: Please copy Sandra Michelsen on > >>>>> all emails regarding scheduling and other time-critical topics. > >>> > >>> > >> > >> > >> > >> ------------------------------------------------------- > >> This SF.Net email is sponsored by: IntelliVIEW -- Interactive > >> Reporting > >> Tool for open source databases. Create drag-&-drop reports. Save time > >> by over 75%! Publish reports on the web. Export to DOC, XLS, RTF, etc. > >> Download a FREE copy at http://www.intelliview.com/go/osdn_nl > >> _______________________________________________ > >> Gmod-gbrowse mailing list > >> Gmod-gbrowse@lists.sourceforge.net > >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >> > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l@portal.open-bio.org > > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > > From matze at bioinf.uni-leipzig.de Wed Feb 2 16:38:10 2005 From: matze at bioinf.uni-leipzig.de (Matthias Adams) Date: Wed Feb 2 16:33:48 2005 Subject: [Bioperl-l] Genbank LOCUS entry Message-ID: <20050202213810.GA4178@bierfass.bioinf.uni-leipzig.de> Hello! I have a problem concerning the genbank LOCUS entry: As described in the BioPerl documentation (http://search.cpan.org/~birney/bioperl-1.4/Bio/Seq.pm): "The display_id() method returns the LOCUS name of a Genbank entry" (also described somewhere else) I can not reproduce this behavior, some test code: #!/usr/bin/perl -w use Bio::DB::GenBank; use Bio::Perl; use strict; use Error qw(:try); my $seqio; my $gb = new Bio::DB::GenBank(); my $q; my $qstring="BV421351"; $q =Bio::DB::Query::GenBank->new (-query =>$qstring, -db => 'nucleotide', -verbose => 0); $seqio = $gb->get_Stream_by_query($q); while( my $seq = $seqio->next_seq ) { # print $seq->desc(), "\n"; print "LOCUS: \"", $seq->display_id(), "\"\n"; } The only output is: LOCUS: "BV421351" It's just the accession number. But I need the LOCUS line as in genbank: BV421351 590 bp DNA linear STS 01-FEB-2005 So whats my problem? Do I have to call another sub? Thanks for your help, Matze. From hlapp at gmx.net Wed Feb 2 16:52:01 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Wed Feb 2 16:47:40 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: <20050202213810.GA4178@bierfass.bioinf.uni-leipzig.de> Message-ID: You do get the LOCUS name - what you are asking for is the entire LOCUS line. There no method for the entire line; but if that's all you need then I'd just do $ grep "^LOCUS" < my-genbank-file on the command line. -hilmar On Wednesday, February 2, 2005, at 01:38 PM, Matthias Adams wrote: > Hello! > > I have a problem concerning the genbank LOCUS entry: > As described in the BioPerl documentation > (http://search.cpan.org/~birney/bioperl-1.4/Bio/Seq.pm): > "The display_id() method returns the LOCUS name of a Genbank entry" > (also described somewhere else) > > I can not reproduce this behavior, some test code: > #!/usr/bin/perl -w > use Bio::DB::GenBank; > use Bio::Perl; > > use strict; > use Error qw(:try); > > my $seqio; > > my $gb = new Bio::DB::GenBank(); > my $q; > my $qstring="BV421351"; > $q =Bio::DB::Query::GenBank->new > (-query =>$qstring, > -db => 'nucleotide', > -verbose => 0); > $seqio = $gb->get_Stream_by_query($q); > while( my $seq = $seqio->next_seq ) { > # print $seq->desc(), "\n"; > print "LOCUS: \"", $seq->display_id(), "\"\n"; > } > > The only output is: > LOCUS: "BV421351" > > It's just the accession number. > But I need the LOCUS line as in genbank: > BV421351 590 bp DNA linear STS 01-FEB-2005 > > So whats my problem? Do I have to call another sub? > > Thanks for your help, Matze. > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From allenday at ucla.edu Wed Feb 2 17:21:36 2005 From: allenday at ucla.edu (Allen Day) Date: Wed Feb 2 17:18:28 2005 Subject: [Bioperl-l] The Feature changes which have broken compatibility In-Reply-To: References: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> Message-ID: > I'm not sure how many people are aware how this works - here is what > happens under the hood: > > 1) Bio::FeatureIO::gff is initialized. This entails establishing a > connection to sourceforge to download the sequence ontology. This of > course will not work if you are offline. Even if you are online, it > doesn't seem to work for me and is of course dependent on the vagaries of > whether the sourceforge & the sourceforge mirror is working. Even if this > all works, there is an initial start-up lag which may be unacceptable to > some applications. Also, not everyone using bioperl is in a country with > fast internet access and local-ish sourceforge mirror. > > In addition, it hardcodes metadata about the ontology in bioperl (see > Bio::Ontology::DocumentRegistry) which is asking for trouble. > > In addition, it downloads the ontology in a legacy deprecated format, > because that's all bioperl currently supports. Also asking for trouble > further down the line > > Why is it doing all this? Purely in order to check that the feature types > provided in the GFF file are valid SOFA terms. Look, I already know all > the GFF3 files I want to parse have valid SOFA types. If I want to check, > I'll do this myself thanks, I don't want bioperl to secretly do it for me > in a hokey way that requires me being online and in the USA, every single > time I parse a file. > > In fact, there is already a script for validating a GFF3 file, in the SO > software repository (which uses Bio::Tools::GFF) which does a much more > thorough job, checking feature parentage too. > > What happened to modularity? You know, parsing in a parser, verification > in a verifier. > > 2) it starts parsing features, assigning Bio::Ontology::Term objects to > each feature (the type). This entails having Graph::Directed, which is > what Jason is alluding to. Not that bad in itself, but unneccessary for > the majority of apps that just want to parse GFF > > Is it just me that thinks this is madness? Can someone please make it > stop? Correct, but this behavior is disabled by default. From the FeatureIO/gff.pm POD: my $featureOut = Bio::FeatureIO->new(-format => 'gff', -version => 3, -fh => \*STDOUT, -validate_terms => 1, #boolean. validate ontology #terms online? default 0 (false). ); If you don't turn this on, it merely creates a Bio::Annotation::OntologyTerm object with the identifer or term name from the GFF file -- no validation attempted. Furthermore, if you do want to validate against the SO/SOFA ontologies, but you don't want to rely on the live ontologies on the web, you can parse SO/SOFA from local files (in deprecated format, admittedly, but this isn't my doing) first. That fills the Bio::Ontology cache so network queries don't happen. -Allen From aldaihani at hotmail.co.uk Wed Feb 2 16:02:35 2005 From: aldaihani at hotmail.co.uk (badr al-daihani) Date: Wed Feb 2 17:18:31 2005 Subject: [Bioperl-l] help Message-ID: Dear Sir/Madame I have installed AcePerl using PPM command and run an example which open a connection to a remote database but I get this error: Module Ace::RPC can not loaded: Can't locate Ace/RPC.pm in @INC <@INC contains: C:/Perl/lib cL\Perl/site/lib .) at line 3. at test1.pl line 13 here is the statement which I think made error my $db= Ace->connect<-host=>=HOST,-port=>PORT) || die "Connection failure: ",Ace-error; Best regards UK _________________________________________________________________ Stay in touch with absent friends - get MSN Messenger http://www.msn.co.uk/messenger From matze at bioinf.uni-leipzig.de Wed Feb 2 17:30:08 2005 From: matze at bioinf.uni-leipzig.de (Matthias Adams) Date: Wed Feb 2 17:26:30 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: References: <20050202213810.GA4178@bierfass.bioinf.uni-leipzig.de> Message-ID: <20050202223008.GA4265@bierfass.bioinf.uni-leipzig.de> On Wed, Feb 02, 2005 at 01:52:01PM -0800, Hilmar Lapp wrote: > You do get the LOCUS name - what you are asking for is the entire LOCUS > line. There no method for the entire line; but if that's all you need "The id is equivalent to the LOCUS field of the GenBank/EMBL databanks" (from http://doc.bioperl.org/releases/bioperl-1.4/Bio/Seq.html, description of the display_id method) > $ grep "^LOCUS" < my-genbank-file > > on the command line. As shown in the little example skript the Perl::Seq object is obtained from the ncbi database, there is no my-genbank-file. Your solution is a workaround. It's looks a little ugly to me to save it into a genbank file an grep the LOCUS line, back to the same perl script... Matze. From lstein at cshl.edu Wed Feb 2 13:28:22 2005 From: lstein at cshl.edu (Lincoln Stein) Date: Wed Feb 2 17:32:40 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying In-Reply-To: <3429b4980df9bb9c6a32dc98b5d99eca@duke.edu> References: <3429b4980df9bb9c6a32dc98b5d99eca@duke.edu> Message-ID: <200502021328.22663.lstein@cshl.edu> Attributes indeed comes in via the Bio::Das interface. The concept is so similar to get_tag_values() that I think we can unify them via a bit of API glue in Bio::SeqFeatureI. Does anyone object if I go ahead and do that? Lincoln On Wednesday 02 February 2005 01:16 pm, Jason Stajich wrote: > I think we really need to unify the attributes / get_tag_values, > name/seq_id/display_name Bio::SeqFeatureI,Bio::AnnotableI, > Bio::Das::SegmentI functions. This seems to be the crux of the > problems. > > If we can document what is expected can we not update the > interfaces and push the method aliases down to the primary objects. > I don't know that we ever expected Bio::SeqFeature::Generic > objects to have the 'attributes' method - is this a Das/Bioperl > method naming conflict? > > > -jason > > -- > Jason Stajich > jason.stajich at duke.edu > http://www.duke.edu/~jes12/ > > On Feb 2, 2005, at 9:54 AM, Marc Logghe wrote: > >> 3) Bio::SeqFeature::Generic::get_tag_values does not exist > >> anymore: Bio::SeqFeature::Geneneric does not inherit from > >> Bio::AnnotatableI which implements that method, which is bad > >> (can it pass the tests, then ?). I don't know what the > >> situation is in bioperl-live HEAD. > > > > Correction: get_tag_values is inherited from Bio::AnnotatableI > > via Bio::SeqFeatureI. > > > > So, this error could be fixed by changing (in the 'horrible patch > > section' of package Bio::DB::Das::BioSQL bugfix-release) > > *Bio::SeqFeature::Generic::attributes = > > \&Bio::SeqFeature::Generic::get_tag_values; > > to: > > *Bio::SeqFeature::Generic::attributes = > > \&Bio::AnnotatableI::get_tag_values; > > > > Making it even more horrible ;-) > > But it works. > > It seems that in older bioperl-live releases there actually *was* > > a Bio::SeqFeature::Generic::get_tag_values sub making the > > original hack work. In release 1.5.0 this sub was gone, breaking > > the hack. > > > > Now, I'll try to tackle the double features problem. Status can > > be followed at > > http://biologghe.homelinux.org:4380/cgi-bin/gbrowse/biosql? > > name=NP_491141%3A1..629;source=biosql;width=800;version=100;label > >=CDS- REGION-PROTEIN > > (beware, it is a slow computer and a slow connection) > > > > Cheers, > > Marc > > > > > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l@portal.open-bio.org > > http://portal.open-bio.org/mailman/listinfo/bioperl-l -- Lincoln D. Stein Cold Spring Harbor Laboratory 1 Bungtown Road Cold Spring Harbor, NY 11724 NOTE: Please copy Sandra Michelsen on all emails regarding scheduling and other time-critical topics. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 189 bytes Desc: not available Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050202/852e2f2b/attachment-0001.bin From jason.stajich at duke.edu Wed Feb 2 17:11:33 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Wed Feb 2 17:32:41 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: References: Message-ID: <393e4deacb7c816e94bf8c8d7dfbe18f@duke.edu> ...Except Matthias is retrieving sequences via Bio::DB, could also pipe the output from SeqIO to grep to get what you want but that seems silly. More correctly one can understand how we re-contruct a genbank file from the Seq objects by looking at the write_seq method in Bio::SeqIO::genbank. For this particular example we do: $temp_line = sprintf ("%-12s%-15s%13s %s%4s%-8s%-8s %3s %-s", 'LOCUS', $seq->id(),$len, (lc($alpha) eq 'protein') ? ('aa','', '') : ('bp', '',$mol),$circular, $div,$date); If you look at the code before this line you can see how we set the $alpha, $mol, $circular, $div, and $date variables. % perldoc -m Bio::SeqIO::genbank | less will give you the code if you don't know where the module is located. -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 2, 2005, at 4:52 PM, Hilmar Lapp wrote: > You do get the LOCUS name - what you are asking for is the entire > LOCUS line. There no method for the entire line; but if that's all you > need then I'd just do > > $ grep "^LOCUS" < my-genbank-file > > on the command line. > > -hilmar > > On Wednesday, February 2, 2005, at 01:38 PM, Matthias Adams wrote: > >> Hello! >> >> I have a problem concerning the genbank LOCUS entry: >> As described in the BioPerl documentation >> (http://search.cpan.org/~birney/bioperl-1.4/Bio/Seq.pm): >> "The display_id() method returns the LOCUS name of a Genbank entry" >> (also described somewhere else) >> >> I can not reproduce this behavior, some test code: >> #!/usr/bin/perl -w >> use Bio::DB::GenBank; >> use Bio::Perl; >> >> use strict; >> use Error qw(:try); >> >> my $seqio; >> >> my $gb = new Bio::DB::GenBank(); >> my $q; >> my $qstring="BV421351"; >> $q =Bio::DB::Query::GenBank->new >> (-query =>$qstring, >> -db => 'nucleotide', >> -verbose => 0); >> $seqio = $gb->get_Stream_by_query($q); >> while( my $seq = $seqio->next_seq ) { >> # print $seq->desc(), "\n"; >> print "LOCUS: \"", $seq->display_id(), "\"\n"; >> } >> >> The only output is: >> LOCUS: "BV421351" >> >> It's just the accession number. >> But I need the LOCUS line as in genbank: >> BV421351 590 bp DNA linear STS 01-FEB-2005 >> >> So whats my problem? Do I have to call another sub? >> >> Thanks for your help, Matze. >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> >> > -- > ------------------------------------------------------------- > Hilmar Lapp email: lapp at gnf.org > GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 > ------------------------------------------------------------- > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From hlapp at gmx.net Wed Feb 2 17:17:25 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Wed Feb 2 17:32:42 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: <393e4deacb7c816e94bf8c8d7dfbe18f@duke.edu> Message-ID: <378C3B3E-7568-11D9-A142-000A959EB4C4@gmx.net> On Wednesday, February 2, 2005, at 02:11 PM, Jason Stajich wrote: > ...Except Matthias is retrieving sequences via Bio::DB oops, sorry I missed that. Thanks Jason for chiming in :-) -hilmar -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From matze at bioinf.uni-leipzig.de Wed Feb 2 17:54:43 2005 From: matze at bioinf.uni-leipzig.de (Matthias Adams) Date: Wed Feb 2 17:50:23 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: <393e4deacb7c816e94bf8c8d7dfbe18f@duke.edu> References: <393e4deacb7c816e94bf8c8d7dfbe18f@duke.edu> Message-ID: <20050202225443.GB4265@bierfass.bioinf.uni-leipzig.de> Hello! On Wed, Feb 02, 2005 at 05:11:33PM -0500, Jason Stajich wrote: > $temp_line = sprintf ("%-12s%-15s%13s %s%4s%-8s%-8s %3s %-s", > 'LOCUS', $seq->id(),$len, > (lc($alpha) eq 'protein') ? ('aa','', > '') : > ('bp', '',$mol),$circular, > $div,$date); Thanks a lot for this suggestion! I have read the Bio::SeqIO::GenBank code and found what I was looking for. I wasn't aware of the fact that $seqio->next_seq gives me a RichSeq object. But maybe the documentation of Bio::Seq::display_id is a little bit ambiguous, isn't it? Matze. From cjm at fruitfly.org Wed Feb 2 17:52:24 2005 From: cjm at fruitfly.org (Chris Mungall) Date: Wed Feb 2 17:50:43 2005 Subject: [Bioperl-l] The Feature changes which have broken compatibility In-Reply-To: References: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> Message-ID: On Wed, 2 Feb 2005, Allen Day wrote: > > I'm not sure how many people are aware how this works - here is what > > happens under the hood: > > > > 1) Bio::FeatureIO::gff is initialized. This entails establishing a > > connection to sourceforge to download the sequence ontology. This of > > course will not work if you are offline. Even if you are online, it > > doesn't seem to work for me and is of course dependent on the vagaries of > > whether the sourceforge & the sourceforge mirror is working. Even if this > > all works, there is an initial start-up lag which may be unacceptable to > > some applications. Also, not everyone using bioperl is in a country with > > fast internet access and local-ish sourceforge mirror. > > > > In addition, it hardcodes metadata about the ontology in bioperl (see > > Bio::Ontology::DocumentRegistry) which is asking for trouble. > > > > In addition, it downloads the ontology in a legacy deprecated format, > > because that's all bioperl currently supports. Also asking for trouble > > further down the line > > > > Why is it doing all this? Purely in order to check that the feature types > > provided in the GFF file are valid SOFA terms. Look, I already know all > > the GFF3 files I want to parse have valid SOFA types. If I want to check, > > I'll do this myself thanks, I don't want bioperl to secretly do it for me > > in a hokey way that requires me being online and in the USA, every single > > time I parse a file. > > > > In fact, there is already a script for validating a GFF3 file, in the SO > > software repository (which uses Bio::Tools::GFF) which does a much more > > thorough job, checking feature parentage too. > > > > What happened to modularity? You know, parsing in a parser, verification > > in a verifier. > > > > 2) it starts parsing features, assigning Bio::Ontology::Term objects to > > each feature (the type). This entails having Graph::Directed, which is > > what Jason is alluding to. Not that bad in itself, but unneccessary for > > the majority of apps that just want to parse GFF > > > > Is it just me that thinks this is madness? Can someone please make it > > stop? > > Correct, but this behavior is disabled by default. From the > FeatureIO/gff.pm POD: > > my $featureOut = Bio::FeatureIO->new(-format => 'gff', > -version => 3, > -fh => \*STDOUT, > -validate_terms => 1, #boolean. validate ontology > #terms online? default 0 (false). > ); > > If you don't turn this on, it merely creates a > Bio::Annotation::OntologyTerm object with the identifer or term name from > the GFF file -- no validation attempted. This doesn't seem to be the case - are you sure you have this code checked in? > Furthermore, if you do want to validate against the SO/SOFA ontologies, > but you don't want to rely on the live ontologies on the web, you can > parse SO/SOFA from local files (in deprecated format, admittedly, but this > isn't my doing) first. That fills the Bio::Ontology cache so network > queries don't happen. Even once you check in your changes so this is no longer the default behaviour, I still strongly believe that this should be moved out of the parser altogether > -Allen > From allenday at ucla.edu Wed Feb 2 18:02:49 2005 From: allenday at ucla.edu (Allen Day) Date: Wed Feb 2 17:58:27 2005 Subject: [Bioperl-l] The Feature changes which have broken compatibility In-Reply-To: References: <08c56c3015b2f7cec19b298ae1d4fbbd@duke.edu> Message-ID: you're right -- it's not in cvs. i'll track down the changes and commit soon. could be a few days, i'm in the middle of moving right now. -allen On Wed, 2 Feb 2005, Chris Mungall wrote: > > > On Wed, 2 Feb 2005, Allen Day wrote: > > > > I'm not sure how many people are aware how this works - here is what > > > happens under the hood: > > > > > > 1) Bio::FeatureIO::gff is initialized. This entails establishing a > > > connection to sourceforge to download the sequence ontology. This of > > > course will not work if you are offline. Even if you are online, it > > > doesn't seem to work for me and is of course dependent on the vagaries of > > > whether the sourceforge & the sourceforge mirror is working. Even if this > > > all works, there is an initial start-up lag which may be unacceptable to > > > some applications. Also, not everyone using bioperl is in a country with > > > fast internet access and local-ish sourceforge mirror. > > > > > > In addition, it hardcodes metadata about the ontology in bioperl (see > > > Bio::Ontology::DocumentRegistry) which is asking for trouble. > > > > > > In addition, it downloads the ontology in a legacy deprecated format, > > > because that's all bioperl currently supports. Also asking for trouble > > > further down the line > > > > > > Why is it doing all this? Purely in order to check that the feature types > > > provided in the GFF file are valid SOFA terms. Look, I already know all > > > the GFF3 files I want to parse have valid SOFA types. If I want to check, > > > I'll do this myself thanks, I don't want bioperl to secretly do it for me > > > in a hokey way that requires me being online and in the USA, every single > > > time I parse a file. > > > > > > In fact, there is already a script for validating a GFF3 file, in the SO > > > software repository (which uses Bio::Tools::GFF) which does a much more > > > thorough job, checking feature parentage too. > > > > > > What happened to modularity? You know, parsing in a parser, verification > > > in a verifier. > > > > > > 2) it starts parsing features, assigning Bio::Ontology::Term objects to > > > each feature (the type). This entails having Graph::Directed, which is > > > what Jason is alluding to. Not that bad in itself, but unneccessary for > > > the majority of apps that just want to parse GFF > > > > > > Is it just me that thinks this is madness? Can someone please make it > > > stop? > > > > Correct, but this behavior is disabled by default. From the > > FeatureIO/gff.pm POD: > > > > my $featureOut = Bio::FeatureIO->new(-format => 'gff', > > -version => 3, > > -fh => \*STDOUT, > > -validate_terms => 1, #boolean. validate ontology > > #terms online? default 0 (false). > > ); > > > > If you don't turn this on, it merely creates a > > Bio::Annotation::OntologyTerm object with the identifer or term name from > > the GFF file -- no validation attempted. > > This doesn't seem to be the case - are you sure you have this code checked > in? > > > Furthermore, if you do want to validate against the SO/SOFA ontologies, > > but you don't want to rely on the live ontologies on the web, you can > > parse SO/SOFA from local files (in deprecated format, admittedly, but this > > isn't my doing) first. That fills the Bio::Ontology cache so network > > queries don't happen. > > Even once you check in your changes so this is no longer the default > behaviour, I still strongly believe that this should be moved out of the > parser altogether > > > -Allen > > > From brian_osborne at cognia.com Wed Feb 2 18:46:28 2005 From: brian_osborne at cognia.com (Brian Osborne) Date: Wed Feb 2 18:42:37 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: <20050202223008.GA4265@bierfass.bioinf.uni-leipzig.de> Message-ID: Matze, You will write the Genbank entry to a string, using the Seq object (http://bioperl.org/Core/Latest/faq.html#Q2.4), and use a regular expression. Brian O. -----Original Message----- From: bioperl-l-bounces@portal.open-bio.org [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Matthias Adams Sent: Wednesday, February 02, 2005 5:30 PM To: bioperl-l@bioperl.org Subject: Re: [Bioperl-l] Genbank LOCUS entry On Wed, Feb 02, 2005 at 01:52:01PM -0800, Hilmar Lapp wrote: > You do get the LOCUS name - what you are asking for is the entire LOCUS > line. There no method for the entire line; but if that's all you need "The id is equivalent to the LOCUS field of the GenBank/EMBL databanks" (from http://doc.bioperl.org/releases/bioperl-1.4/Bio/Seq.html, description of the display_id method) > $ grep "^LOCUS" < my-genbank-file > > on the command line. As shown in the little example skript the Perl::Seq object is obtained from the ncbi database, there is no my-genbank-file. Your solution is a workaround. It's looks a little ugly to me to save it into a genbank file an grep the LOCUS line, back to the same perl script... Matze. _______________________________________________ Bioperl-l mailing list Bioperl-l@portal.open-bio.org http://portal.open-bio.org/mailman/listinfo/bioperl-l From matze at bioinf.uni-leipzig.de Thu Feb 3 01:10:29 2005 From: matze at bioinf.uni-leipzig.de (Matthias Adams) Date: Thu Feb 3 01:07:02 2005 Subject: [Bioperl-l] Genbank LOCUS entry In-Reply-To: References: <20050202223008.GA4265@bierfass.bioinf.uni-leipzig.de> Message-ID: <20050203061029.GA6442@bierfass.bioinf.uni-leipzig.de> On Wed, Feb 02, 2005 at 06:46:28PM -0500, Brian Osborne wrote: > You will write the Genbank entry to a string, using the Seq object > (http://bioperl.org/Core/Latest/faq.html#Q2.4), and use a regular > expression. Good idea, thank you. I now use the Seq object as an RichSeq object and take out of it what I need. Matze. From gyang at plantbio.uga.edu Thu Feb 3 09:28:36 2005 From: gyang at plantbio.uga.edu (Guojun Yang) Date: Thu Feb 3 09:24:24 2005 Subject: [Bioperl-l] problem with next_feature on Linux In-Reply-To: <20050203061029.GA6442@bierfass.bioinf.uni-leipzig.de> Message-ID: <20050203092836.4dbc30d9@dogwood.plantbio.uga.edu> Hi, all, I am using the following sentence to process bl2seq result: while( my $hsp = $bl2seq_report->next_feature){...} On a windows system, it worked well, however,when I move the script on to a linux system. It says "Object method next_feature not found" or sth like that. Is this because of my installation of Bioperl on linux? Thanks, Guojun Yang ----- Original Message ----- From: Matthias Adams To: bioperl-l@bioperl.org Sent: Thu, 3 Feb 2005 01:10:29 -0500 Subject: Re: [Bioperl-l] Genbank LOCUS entry > On Wed, Feb 02, 2005 at 06:46:28PM -0500, Brian Osborne wrote: > > You will write the Genbank entry to a string, using the Seq object > > (http://bioperl.org/Core/Latest/faq.html#Q2.4), and use a regular > > expression. > Good idea, thank you. > I now use the Seq object as an RichSeq object and take out of it > what I need. > > Matze. > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From jason.stajich at duke.edu Thu Feb 3 09:40:08 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Thu Feb 3 09:35:44 2005 Subject: [Bioperl-l] problem with next_feature on Linux In-Reply-To: <20050203092836.4dbc30d9@dogwood.plantbio.uga.edu> References: <20050203092836.4dbc30d9@dogwood.plantbio.uga.edu> Message-ID: <05b973a9e75f87dd6757971bbb4c3c11@duke.edu> The exact error message is in fact useful to diagnose the problem. Are you sure you have the same version of bioperl on both machines? In the future you also might want to use Bio::SearchIO to parse bl2seq output as well. -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 3, 2005, at 9:28 AM, Guojun Yang wrote: > Hi, all, > I am using the following sentence to process bl2seq result: > while( my $hsp = $bl2seq_report->next_feature){...} > On a windows system, it worked well, however,when I move the script on > to a linux system. It says "Object method next_feature not found" or > sth like that. Is this because of my installation of Bioperl on linux? > Thanks, > Guojun Yang > > > ----- Original Message ----- > From: Matthias Adams > To: bioperl-l@bioperl.org > Sent: Thu, 3 Feb 2005 01:10:29 -0500 > Subject: Re: [Bioperl-l] Genbank LOCUS entry > > >> On Wed, Feb 02, 2005 at 06:46:28PM -0500, Brian Osborne wrote: >>> You will write the Genbank entry to a string, using the Seq object >>> (http://bioperl.org/Core/Latest/faq.html#Q2.4), and use a regular >>> expression. >> Good idea, thank you. >> I now use the Seq object as an RichSeq object and take out of it >> what I need. >> >> Matze. >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From muratem at eng.uah.edu Thu Feb 3 10:59:41 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Thu Feb 3 10:55:20 2005 Subject: [Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Message-ID: Greetings I thought I remembered seeing this go by, but I couldn't find it in the archive, so I'll bring it up. I downloaded what I think is the latest bioperl-db-0.1. Initialization of the database went off without a glitch, and I loaded a bunch of records in Swissprot format. I then tried to load some simple fasta files and got a 'no method' message in SeqAdaptor.pm at line 477. It uses the seq_version method instead of the current version method. I'm guessing that the 'store' method that contains the error gets called for fasta file and some other method gets called for swissprot. Anyway, I changed the code and it works. Except... The bioentry table has a key biodatabase_id that includes biodatabase_id, accession, and entry version. The fasta files have only a number on the header line to identify them and apparently either SeqIO or Seq loads this into the display id and leaves the accession undefined so that all of the records have the same key (e.g., 4-unknown-UNK) which is a Bozo no-no (for you old enough to remember who Bozo is). I'm using bioperl 1.4. Shouldn't the accession get set to display_id if accession doesn't exist? Failing that, would it make sense to modify the store method in SeqAdaptor to use the display_id in the key if the accession is undefined? Thanks Mike From Marc.Logghe at devgen.com Thu Feb 3 11:45:51 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Thu Feb 3 11:41:59 2005 Subject: [Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Message-ID: > The bioentry table has a key biodatabase_id that includes > biodatabase_id, > accession, and entry version. The fasta files have only a > number on the > header line to identify them and apparently either SeqIO or > Seq loads this > into the display id and leaves the accession undefined so > that all of the > records have the same key (e.g., 4-unknown-UNK) which is a > Bozo no-no (for > you old enough to remember who Bozo is). I'm using bioperl > 1.4. Shouldn't > the accession get set to display_id if accession doesn't > exist? Failing > that, would it make sense to modify the store method in > SeqAdaptor to use > the display_id in the key if the accession is undefined? What I do in that case is use the -pipeline option of load_seqdatabase.pl and pass it a seqprocessor that sets the accession number to the display_id. E.g. load_seqdatabase.pl --format fasta --pipeline "SeqProcessor::Accession" You create first the use-able SeqProcessor::Accession processor that basically should look like this: package SeqProcessor::Accession; use strict; use vars qw(@ISA); use Bio::Seq::BaseSeqProcessor; use Bio::SeqFeature::Generic; @ISA = qw(Bio::Seq::BaseSeqProcessor); sub process_seq { my ($self, $seq) = @_; $seq->accession_number($seq->display_id); return ($seq); } 1; I am a big fan of the seqprocessor facility of Bioperl. It is just magic. Everybody should make use of it ;-) Cheers, Marc From muratem at eng.uah.edu Thu Feb 3 11:53:17 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Thu Feb 3 11:48:55 2005 Subject: [Bioperl-l] EMBOSS/water interface Message-ID: Greetings I'm trying to implement the Bio::Factory::EMBOSS to the 'water' method (which coincidentally is the one used in the man page example). I'm using EMBOSS 2.9.0 which is the latest on the emboss website. I get an error 'Died: Unknown qualifier -seqall' which I interpret to mean the emboss water method complaining that -seqall is not a valid argument. It is, however, used in the man page. Furthermore, I don't see any documentation for Bio::Factory::EMBOSS in the module documentation at bioperl.org. Is this an obsolete method? Has anyone ever got the example in the manpage to work? Regards, Mike From muratem at eng.uah.edu Thu Feb 3 11:54:42 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Thu Feb 3 11:50:22 2005 Subject: [Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? In-Reply-To: Message-ID: On Thu, 3 Feb 2005, Marc Logghe wrote: > > The bioentry table has a key biodatabase_id that includes > > biodatabase_id, > > accession, and entry version. The fasta files have only a > > number on the > > header line to identify them and apparently either SeqIO or > > Seq loads this > > into the display id and leaves the accession undefined so > > that all of the > > records have the same key (e.g., 4-unknown-UNK) which is a > > Bozo no-no (for > > you old enough to remember who Bozo is). I'm using bioperl > > 1.4. Shouldn't > > the accession get set to display_id if accession doesn't > > exist? Failing > > that, would it make sense to modify the store method in > > SeqAdaptor to use > > the display_id in the key if the accession is undefined? > > What I do in that case is use the -pipeline option of load_seqdatabase.pl and pass it a seqprocessor that sets the accession number to the display_id. > E.g. > load_seqdatabase.pl --format fasta --pipeline "SeqProcessor::Accession" > > You create first the use-able SeqProcessor::Accession processor that basically should look like this: > > package SeqProcessor::Accession; > use strict; > use vars qw(@ISA); > use Bio::Seq::BaseSeqProcessor; > use Bio::SeqFeature::Generic; > > @ISA = qw(Bio::Seq::BaseSeqProcessor); > > sub process_seq > { > my ($self, $seq) = @_; > $seq->accession_number($seq->display_id); > return ($seq); > } > > 1; > > I am a big fan of the seqprocessor facility of Bioperl. It is just magic. > Everybody should make use of it ;-) > Cheers, > Marc > > Marc Thanks, I'll give it a try. Cheers Mike From jason.stajich at duke.edu Thu Feb 3 12:02:50 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Thu Feb 3 11:58:27 2005 Subject: [Bioperl-l] EMBOSS/water interface In-Reply-To: References: Message-ID: <26e6525de3e2d80f7af5bfaae7196ed8@duke.edu> -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 3, 2005, at 11:53 AM, Mike Muratet wrote: > Greetings > > I'm trying to implement the Bio::Factory::EMBOSS to the 'water' > method (which coincidentally is the one used in the man page example). > I'm > using EMBOSS 2.9.0 which is the latest on the emboss website. I get an > error 'Died: Unknown qualifier -seqall' which I interpret to mean the > emboss water method complaining that -seqall is not a valid argument. > It > is, however, used in the man page. Furthermore, I don't see any > documentation for Bio::Factory::EMBOSS in the module documentation at > bioperl.org. Is this an obsolete method? Has anyone ever got the > example > in the manpage to work? It is part of bioperl-run so check http://doc.bioperl.org/bioperl-run/ These problems reflect differences in EMBOSS-2.8.0 and EMBOSS-2.9.0 cmdline options. If you do %water -help you'll see the names are now -asequence -bsequence The tests in t/EMBOSS.t in bioperl-run have not been updated. We'll have to put some code in there which detects the version of EMBOSS and updates the parameters appropriately. > Regards, > > Mike > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From muratem at eng.uah.edu Thu Feb 3 12:13:03 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Thu Feb 3 12:09:04 2005 Subject: [Bioperl-l] EMBOSS/water interface In-Reply-To: <26e6525de3e2d80f7af5bfaae7196ed8@duke.edu> Message-ID: On Thu, 3 Feb 2005, Jason Stajich wrote: > > -- > Jason Stajich > jason.stajich at duke.edu > http://www.duke.edu/~jes12/ > On Feb 3, 2005, at 11:53 AM, Mike Muratet wrote: > > > Greetings > > > > I'm trying to implement the Bio::Factory::EMBOSS to the 'water' > > method (which coincidentally is the one used in the man page example). > > I'm > > using EMBOSS 2.9.0 which is the latest on the emboss website. I get an > > error 'Died: Unknown qualifier -seqall' which I interpret to mean the > > emboss water method complaining that -seqall is not a valid argument. > > It > > is, however, used in the man page. Furthermore, I don't see any > > documentation for Bio::Factory::EMBOSS in the module documentation at > > bioperl.org. Is this an obsolete method? Has anyone ever got the > > example > > in the manpage to work? > It is part of bioperl-run so check http://doc.bioperl.org/bioperl-run/ > > These problems reflect differences in EMBOSS-2.8.0 and EMBOSS-2.9.0 > cmdline options. > > If you do > %water -help > you'll see the names are now -asequence -bsequence > > The tests in t/EMBOSS.t in bioperl-run have not been updated. We'll > have to put some code in there which detects the version of EMBOSS and > updates the parameters appropriately. > > > > Regards, > > > > Mike > > Jason Thanks. I suspected as much. Too bad, the ability to pass an array was cool. Mike From muratem at eng.uah.edu Thu Feb 3 12:25:35 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Thu Feb 3 12:23:02 2005 Subject: [Bioperl-l] EMBOSS/water interface In-Reply-To: Message-ID: On Thu, 3 Feb 2005, Mike Muratet wrote: > > > On Thu, 3 Feb 2005, Jason Stajich wrote: > > > > > -- > > Jason Stajich > > jason.stajich at duke.edu > > http://www.duke.edu/~jes12/ > > On Feb 3, 2005, at 11:53 AM, Mike Muratet wrote: > > > > > Greetings > > > > > > I'm trying to implement the Bio::Factory::EMBOSS to the 'water' > > > method (which coincidentally is the one used in the man page example). > > > I'm > > > using EMBOSS 2.9.0 which is the latest on the emboss website. I get an > > > error 'Died: Unknown qualifier -seqall' which I interpret to mean the > > > emboss water method complaining that -seqall is not a valid argument. > > > It > > > is, however, used in the man page. Furthermore, I don't see any > > > documentation for Bio::Factory::EMBOSS in the module documentation at > > > bioperl.org. Is this an obsolete method? Has anyone ever got the > > > example > > > in the manpage to work? > > It is part of bioperl-run so check http://doc.bioperl.org/bioperl-run/ > > > > These problems reflect differences in EMBOSS-2.8.0 and EMBOSS-2.9.0 > > cmdline options. > > > > If you do > > %water -help > > you'll see the names are now -asequence -bsequence > > > > The tests in t/EMBOSS.t in bioperl-run have not been updated. We'll > > have to put some code in there which detects the version of EMBOSS and > > updates the parameters appropriately. > > > > > > > Regards, > > > > > > Mike > > > > > Jason > > Thanks. I suspected as much. Too bad, the ability to pass an array was > cool. > > Mike > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > Jason I think I spoke too soon. You can pass an array, you just need to call it bsequence. thanks Mike From hlapp at gmx.net Thu Feb 3 23:51:41 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Thu Feb 3 23:47:28 2005 Subject: [Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? In-Reply-To: Message-ID: <76330422-7668-11D9-BA7F-000A959EB4C4@gmx.net> Mike, you should not use the bioperl-db-0.1 release if you want to use the current biosql schema. Also, load_seqdatabase.pl does not have a --pipeline option in the 0.1 release. In fact, it almost changed 100% as did much of the rest of bioperl-db. Download bioperl-db from cvs to get the latest revision. -hilmar On Thursday, February 3, 2005, at 07:59 AM, Mike Muratet wrote: > Greetings > > I thought I remembered seeing this go by, but I couldn't find it in the > archive, so I'll bring it up. > > I downloaded what I think is the latest bioperl-db-0.1. Initialization > of > the database went off without a glitch, and I loaded a bunch of > records in > Swissprot format. I then tried to load some simple fasta files and got > a > 'no method' message in SeqAdaptor.pm at line 477. It uses the > seq_version > method instead of the current version method. I'm guessing that the > 'store' method that contains the error gets called for fasta file and > some > other method gets called for swissprot. Anyway, I changed the code and > it > works. > > Except... > > The bioentry table has a key biodatabase_id that includes > biodatabase_id, > accession, and entry version. The fasta files have only a number on the > header line to identify them and apparently either SeqIO or Seq loads > this > into the display id and leaves the accession undefined so that all of > the > records have the same key (e.g., 4-unknown-UNK) which is a Bozo no-no > (for > you old enough to remember who Bozo is). I'm using bioperl 1.4. > Shouldn't > the accession get set to display_id if accession doesn't exist? Failing > that, would it make sense to modify the store method in SeqAdaptor to > use > the display_id in the key if the accession is undefined? > > Thanks > > Mike > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From muratem at eng.uah.edu Fri Feb 4 12:02:24 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Fri Feb 4 11:58:06 2005 Subject: [Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? In-Reply-To: <76330422-7668-11D9-BA7F-000A959EB4C4@gmx.net> Message-ID: Hilmar I think part of the discussion that went by was what to use? 0.1 is the latest version at bioperl.org. Is there an alternative? (Roll your own?) Thanks Mike On Thu, 3 Feb 2005, Hilmar Lapp wrote: > Mike, you should not use the bioperl-db-0.1 release if you want to use > the current biosql schema. > > Also, load_seqdatabase.pl does not have a --pipeline option in the 0.1 > release. In fact, it almost changed 100% as did much of the rest of > bioperl-db. Download bioperl-db from cvs to get the latest revision. > > -hilmar > > On Thursday, February 3, 2005, at 07:59 AM, Mike Muratet wrote: > > > Greetings > > > > I thought I remembered seeing this go by, but I couldn't find it in the > > archive, so I'll bring it up. > > > > I downloaded what I think is the latest bioperl-db-0.1. Initialization > > of > > the database went off without a glitch, and I loaded a bunch of > > records in > > Swissprot format. I then tried to load some simple fasta files and got > > a > > 'no method' message in SeqAdaptor.pm at line 477. It uses the > > seq_version > > method instead of the current version method. I'm guessing that the > > 'store' method that contains the error gets called for fasta file and > > some > > other method gets called for swissprot. Anyway, I changed the code and > > it > > works. > > > > Except... > > > > The bioentry table has a key biodatabase_id that includes > > biodatabase_id, > > accession, and entry version. The fasta files have only a number on the > > header line to identify them and apparently either SeqIO or Seq loads > > this > > into the display id and leaves the accession undefined so that all of > > the > > records have the same key (e.g., 4-unknown-UNK) which is a Bozo no-no > > (for > > you old enough to remember who Bozo is). I'm using bioperl 1.4. > > Shouldn't > > the accession get set to display_id if accession doesn't exist? Failing > > that, would it make sense to modify the store method in SeqAdaptor to > > use > > the display_id in the key if the accession is undefined? > > > > Thanks > > > > Mike > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l@portal.open-bio.org > > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > > > > -- > ------------------------------------------------------------- > Hilmar Lapp email: lapp at gnf.org > GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 > ------------------------------------------------------------- > > > From muratem at eng.uah.edu Fri Feb 4 12:03:37 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Fri Feb 4 11:59:17 2005 Subject: [Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? In-Reply-To: <76330422-7668-11D9-BA7F-000A959EB4C4@gmx.net> Message-ID: On Thu, 3 Feb 2005, Hilmar Lapp wrote: > Mike, you should not use the bioperl-db-0.1 release if you want to use > the current biosql schema. > > Also, load_seqdatabase.pl does not have a --pipeline option in the 0.1 > release. In fact, it almost changed 100% as did much of the rest of > bioperl-db. Download bioperl-db from cvs to get the latest revision. > I need to slow down. I didn't read the last sentence before I fired off the last email. Mike From aldaihani at hotmail.co.uk Fri Feb 4 14:22:44 2005 From: aldaihani at hotmail.co.uk (badr al-daihani) Date: Fri Feb 4 14:18:57 2005 Subject: [Bioperl-l] urgent help with AcePerl Message-ID: Hi I'm working in windows environment. I use ppm to install AcePerl. however when I run the following perl program I get an error says: Module Ace::RPC not loaded: Can't locate Ace/RPC.pm in @INC <@INC contains: C:/Perl/lib c:/Perl/site/lib .) at (eval 2) line 3. I appreciate your help in advance best regards the program #!/usr/local/bin/perl # This example will pull some information on various authors # from the C. Elegans ACEDB. use Ace; use strict vars; use constant HOST => $ENV{ACEDB_HOST} || 'beta.crbm.cnrs-mop.fr'; use constant PORT => $ENV{ACEDB_PORT} || 20000100; $|=1; print "Opening the database...."; my $db = Ace->connect(-host=>HOST,-port=>PORT) || die "Connection failure: ",Ace->error; print "done.\n\n"; my @authors = $db->fetch('Author','S*'); print "There are ",scalar(@authors)," Author objects starting with the letter \"S\".\n", "The first one's name is ",$authors[0],"\n", "His mailing address is ",join(',',$authors[0]->Mail),"\n\n"; my @papers = $authors[0]->Paper; print "He has published ",scalar(@papers)," papers.\n\n"; my $paper = $papers[$#papers]->fetch; print "The title of his most recent paper is ",$paper->Title,"\n", "The coauthors were ",join(", ",$paper->Author),"\n\n", "Here is all the information on the first coauthor:\n", (($paper->Author)[0]->fetch->asString); _________________________________________________________________ Use MSN Messenger to send music and pics to your friends http://www.msn.co.uk/messenger From palmeida at igc.gulbenkian.pt Fri Feb 4 20:07:50 2005 From: palmeida at igc.gulbenkian.pt (Paulo Almeida) Date: Fri Feb 4 20:04:39 2005 Subject: [Bioperl-l] urgent help with AcePerl In-Reply-To: References: Message-ID: <2732.84.90.13.62.1107565670.squirrel@webmail.igc.gulbenkian.pt> I don't know anything about Perl on Windows, but maybe that ppm only installs the Ace module, and not Ace::RPC? I wouldn't know where to look though. Can you see if there are Ace sub-modules in the place where you got Ace? -Paulo > Hi > I'm working in windows environment. I use ppm to install AcePerl. however > when I run the following perl program I get an error says: > Module Ace::RPC not loaded: Can't locate Ace/RPC.pm in @INC <@INC > contains: > C:/Perl/lib c:/Perl/site/lib .) at (eval 2) line 3. > > > I appreciate your help in advance > > best regards > > > the program > #!/usr/local/bin/perl > # This example will pull some information on various authors > # from the C. Elegans ACEDB. > > use Ace; > use strict vars; > > use constant HOST => $ENV{ACEDB_HOST} || 'beta.crbm.cnrs-mop.fr'; > use constant PORT => $ENV{ACEDB_PORT} || 20000100; > $|=1; > > print "Opening the database...."; > my $db = Ace->connect(-host=>HOST,-port=>PORT) > || die "Connection failure: ",Ace->error; > print "done.\n\n"; > > my @authors = $db->fetch('Author','S*'); > print "There are ",scalar(@authors)," Author objects starting with the > letter \"S\".\n", > "The first one's name is ",$authors[0],"\n", > "His mailing address is ",join(',',$authors[0]->Mail),"\n\n"; > > my @papers = $authors[0]->Paper; > print "He has published ",scalar(@papers)," papers.\n\n"; > > my $paper = $papers[$#papers]->fetch; > print "The title of his most recent paper is ",$paper->Title,"\n", > "The coauthors were ",join(", ",$paper->Author),"\n\n", > "Here is all the information on the first coauthor:\n", > (($paper->Author)[0]->fetch->asString); From harris at cshl.edu Sat Feb 5 10:52:44 2005 From: harris at cshl.edu (Todd Harris) Date: Sat Feb 5 10:48:29 2005 Subject: [Bioperl-l] urgent help with AcePerl In-Reply-To: <2732.84.90.13.62.1107565670.squirrel@webmail.igc.gulbenkian.pt> Message-ID: Badr - Which version of AcePerl are you running? I believe newer versions use sockets instead of RPC - perhaps the PPM is out-of-date as Paulo suggests. You might also try building Aceperl from source which gives you the option of building for rpc, sockets, or both. Todd > On 2/4/05 6:07 PM, Paulo Almeida wrote: > I don't know anything about Perl on Windows, but maybe that ppm only > installs the Ace module, and not Ace::RPC? I wouldn't know where to look > though. Can you see if there are Ace sub-modules in the place where you > got Ace? > > -Paulo > >> Hi >> I'm working in windows environment. I use ppm to install AcePerl. however >> when I run the following perl program I get an error says: >> Module Ace::RPC not loaded: Can't locate Ace/RPC.pm in @INC <@INC >> contains: >> C:/Perl/lib c:/Perl/site/lib .) at (eval 2) line 3. >> >> >> I appreciate your help in advance >> >> best regards >> >> >> the program >> #!/usr/local/bin/perl >> # This example will pull some information on various authors >> # from the C. Elegans ACEDB. >> >> use Ace; >> use strict vars; >> >> use constant HOST => $ENV{ACEDB_HOST} || 'beta.crbm.cnrs-mop.fr'; >> use constant PORT => $ENV{ACEDB_PORT} || 20000100; >> $|=1; >> >> print "Opening the database...."; >> my $db = Ace->connect(-host=>HOST,-port=>PORT) >> || die "Connection failure: ",Ace->error; >> print "done.\n\n"; >> >> my @authors = $db->fetch('Author','S*'); >> print "There are ",scalar(@authors)," Author objects starting with the >> letter \"S\".\n", >> "The first one's name is ",$authors[0],"\n", >> "His mailing address is ",join(',',$authors[0]->Mail),"\n\n"; >> >> my @papers = $authors[0]->Paper; >> print "He has published ",scalar(@papers)," papers.\n\n"; >> >> my $paper = $papers[$#papers]->fetch; >> print "The title of his most recent paper is ",$paper->Title,"\n", >> "The coauthors were ",join(", ",$paper->Author),"\n\n", >> "Here is all the information on the first coauthor:\n", >> (($paper->Author)[0]->fetch->asString); > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From akholloway at ucdavis.edu Thu Feb 3 14:32:12 2005 From: akholloway at ucdavis.edu (Alisha Holloway) Date: Sat Feb 5 11:21:33 2005 Subject: [Bioperl-l] search by keyword Message-ID: I would like to search genbank using for sequences using a keyword (e.g. a CG number). Which module would I use for this task? I have found the modules for searching by accession number, ID, etc, but can't figure out how to search by keyword. Many thanks in advance, Alisha -- Alisha Holloway Postdoctoral Fellow Section of Evolution & Ecology 3347 Storer Hall University of California Davis, CA 95616 530-752-4253 Office 512-297-3958 Cell 530-752-1449 Fax From akmala at nmrc.navy.mil Fri Feb 4 10:42:16 2005 From: akmala at nmrc.navy.mil (Arya Akmal) Date: Sat Feb 5 11:21:41 2005 Subject: [Bioperl-l] bioperl on Mac OSX Message-ID: <2e8e246e128476ca92e5e8127968f1ed@nmrc.navy.mil> Hello- I've had some trouble installing the bioperl bundle on Mac OSX (specifically 10.3.7). I've tried both though cpan and by downloading the bioperl tarfile and making it. The problem is that a large number of the tests fail. I can do a forced install, but find that a significant part of the functionality is missing ... as an example, the HTML HeadParser.pm module is missing, so I cannot do remote NCBI BLAST queries. Is this a common problem on OSX platforms, and are there any workarounds? thanks. From smathias at poblano.health.unm.edu Fri Feb 4 18:07:36 2005 From: smathias at poblano.health.unm.edu (Stephen L. Mathias) Date: Sat Feb 5 11:22:39 2005 Subject: [Bioperl-l] Entrez Gene and bioperl-db In-Reply-To: <1105959962.21808.15.camel@localhost.localdomain> References: <2ED9C47A-5898-11D9-AC01-000A959EB4C4@gmx.net> <1104792001.3186.17.camel@localhost.localdomain> <0F5A3AE4-5DDA-11D9-AA3C-000393C44276@duke.edu> <1104871954.3102.24.camel@localhost.localdomain> <1DA5FD5C-5E94-11D9-9C0C-000393C44276@duke.edu> <1105044266.3084.27.camel@localhost.localdomain> <1105959962.21808.15.camel@localhost.localdomain> Message-ID: <1107558456.6594.104.camel@poblano.health.unm.edu> Hi Peter, On Mon, 2005-01-17 at 04:06, Peter Robinson wrote: > Hi list, > 3) In the meantime I have also gotten a lex/yacc parser in C to parse > the species-specific Gene files (which is by far the most interesting > file in the Entrez gene system). In principle this approach could be > done in Perl -- straightforward but a lot of detail work. I will be > needing this kind of thing for my work, so I will continue to work on > this, and once it is bug-free in C I will think about ways of porting it > to Bioperl (this might take a while). As I mentioned before on this > list, if anybody else can do this more quickly please go ahead (but drop > me a line); on the other hand, collaborators who like the idea of > writing a grammer in the style of lex/yacc or ANTLR are also welcome. I've written a script that uses Parse::RecDescent and an associated grammar to parse the EntrezGene ASN.1 files. Actually, I've only tested it on the human file, but I assume it will work for the rest as well. According to my (admittedly shallow) understanding, Parse::RecDescent grammars work in a fundamentally different way than yacc grammars do. However, it is pure Perl. The script does not create bioperl objects; it simply converts the records into large data structures that more or less mirror the ASN.1. I take these and store the bits I want in a database. It would be easy enough to convert to bioperl objects. However, you may not want to take this approach as the parser itself is pretty slow (some examples below). My familiarity with the bioperl object model is a little rusty, but *a lot* of instantiation would need to be done to fully encapsulate the data represented in an EntrezGene record. I'm guessing that the additional time required would be considerable. The parser takes a second or two for most genes, however this goes up dramatically for larger records. Here are some examples from a little test file run on a box with fairly fast processors (2.8GHz/1MB Cache Xeon): Parsing Record 1 (439656 bytes) Success for gene BRCA1 (LocusID 672). Time: 2 minutes and 6 seconds. Parsing Record 2 (224148 bytes) Success for gene CFTR (LocusID 1080). Time: 33 seconds. Parsing Record 3 (45261 bytes) Success for gene CNR1 (LocusID 1268). Time: 1 second. Parsing Record 4 (570419 bytes) Success for gene COX2 (LocusID 4513). Time: 5 minutes and 30 seconds. Parsing Record 5 (40860 bytes) Success for gene CYP1B1 (LocusID 1545). Time: 1 second. Parsing Record 6 (42362 bytes) Success for gene SRY (LocusID 6736). Time: 2 seconds. Parsing Record 7 (110754 bytes) Success for gene TRPV1 (LocusID 7442). Time: 7 seconds. It may very well be possible to speed this thing up. This was my first foray into Parse::RecDescent land, and it was somewhat, um, painful to get it working at all. At this point, I'm not inclined to spend any more time on it. It works for my purposes. At any rate, if you (or anyone else on the list) are interested I'd be happy to post the code. -Steve -- ( Stephen L. Mathias, Ph.D. ( s m a t h i a s ( ) Office of Biocomputing ) @ p o b l a n o ) ( UNM School of Medicine ( . h e a l t h . ( ) ) u n m . e d u ) ( http://poblano.health.unm.edu/ ( -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 189 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050204/d856bf81/attachment.bin From jason.stajich at duke.edu Sat Feb 5 11:31:45 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Sat Feb 5 11:27:14 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: <2e8e246e128476ca92e5e8127968f1ed@nmrc.navy.mil> References: <2e8e246e128476ca92e5e8127968f1ed@nmrc.navy.mil> Message-ID: <8bd81fbab3a42b74a61351a95c5de2e0@duke.edu> You need to install the dependancies if you want all of the functionality. When you tried to install from CPAN did you install Bundle::BioPerl? This is described in the INSTALL document. http://bioperl.org/Core/Latest/INSTALL -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 4, 2005, at 10:42 AM, Arya Akmal wrote: > Hello- > > I've had some trouble installing the bioperl bundle on Mac OSX > (specifically 10.3.7). I've tried both though cpan and by downloading > the bioperl tarfile and making it. The problem is that a large number > of the tests fail. I can do a forced install, but find that a > significant part of the functionality is missing ... as an example, > the HTML HeadParser.pm module is missing, so I cannot do remote NCBI > BLAST queries. Is this a common problem on OSX platforms, and are > there any workarounds? > > thanks. > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From jason.stajich at duke.edu Sat Feb 5 11:33:04 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Sat Feb 5 11:28:45 2005 Subject: [Bioperl-l] search by keyword In-Reply-To: References: Message-ID: <872eda02302c37634ff72610b2d1883e@duke.edu> Try Bio::DB::Query::GenBank to make Entrez queries. -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 3, 2005, at 2:32 PM, Alisha Holloway wrote: > I would like to search genbank using for sequences using a keyword > (e.g. a CG number). Which module would I use for this task? I have > found the modules for searching by accession number, ID, etc, but > can't figure out how to search by keyword. > > Many thanks in advance, > > Alisha > -- > Alisha Holloway > > Postdoctoral Fellow > Section of Evolution & Ecology > 3347 Storer Hall > University of California > Davis, CA 95616 > > 530-752-4253 Office > 512-297-3958 Cell > 530-752-1449 Fax > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050205/a7a88361/PGP.bin From aldaihani at hotmail.co.uk Sat Feb 5 11:39:21 2005 From: aldaihani at hotmail.co.uk (badr al-daihani) Date: Sat Feb 5 11:36:38 2005 Subject: [Bioperl-l] urgent help with AcePerl In-Reply-To: Message-ID: hi I'm using AcePerl-1.87. best regards >From: Todd Harris >To: Paulo Almeida , badr al-daihani > >CC: bioperl-l@bioperl.org >Subject: Re: [Bioperl-l] urgent help with AcePerl >Date: Sat, 05 Feb 2005 08:52:44 -0700 > >Badr - > >Which version of AcePerl are you running? I believe newer versions use >sockets instead of RPC - perhaps the PPM is out-of-date as Paulo suggests. > >You might also try building Aceperl from source which gives you the option >of building for rpc, sockets, or both. > >Todd > > > > On 2/4/05 6:07 PM, Paulo Almeida wrote: > > > I don't know anything about Perl on Windows, but maybe that ppm only > > installs the Ace module, and not Ace::RPC? I wouldn't know where to look > > though. Can you see if there are Ace sub-modules in the place where you > > got Ace? > > > > -Paulo > > > >> Hi > >> I'm working in windows environment. I use ppm to install AcePerl. >however > >> when I run the following perl program I get an error says: > >> Module Ace::RPC not loaded: Can't locate Ace/RPC.pm in @INC <@INC > >> contains: > >> C:/Perl/lib c:/Perl/site/lib .) at (eval 2) line 3. > >> > >> > >> I appreciate your help in advance > >> > >> best regards > >> > >> > >> the program > >> #!/usr/local/bin/perl > >> # This example will pull some information on various authors > >> # from the C. Elegans ACEDB. > >> > >> use Ace; > >> use strict vars; > >> > >> use constant HOST => $ENV{ACEDB_HOST} || 'beta.crbm.cnrs-mop.fr'; > >> use constant PORT => $ENV{ACEDB_PORT} || 20000100; > >> $|=1; > >> > >> print "Opening the database...."; > >> my $db = Ace->connect(-host=>HOST,-port=>PORT) > >> || die "Connection failure: ",Ace->error; > >> print "done.\n\n"; > >> > >> my @authors = $db->fetch('Author','S*'); > >> print "There are ",scalar(@authors)," Author objects starting with the > >> letter \"S\".\n", > >> "The first one's name is ",$authors[0],"\n", > >> "His mailing address is ",join(',',$authors[0]->Mail),"\n\n"; > >> > >> my @papers = $authors[0]->Paper; > >> print "He has published ",scalar(@papers)," papers.\n\n"; > >> > >> my $paper = $papers[$#papers]->fetch; > >> print "The title of his most recent paper is ",$paper->Title,"\n", > >> "The coauthors were ",join(", ",$paper->Author),"\n\n", > >> "Here is all the information on the first coauthor:\n", > >> (($paper->Author)[0]->fetch->asString); > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l@portal.open-bio.org > > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > > >_______________________________________________ >Bioperl-l mailing list >Bioperl-l@portal.open-bio.org >http://portal.open-bio.org/mailman/listinfo/bioperl-l _________________________________________________________________ It's fast, it's easy and it's free. Get MSN Messenger today! http://www.msn.co.uk/messenger From brian_osborne at cognia.com Sat Feb 5 17:30:41 2005 From: brian_osborne at cognia.com (Brian Osborne) Date: Sat Feb 5 17:26:35 2005 Subject: [Bioperl-l] search by keyword In-Reply-To: Message-ID: Alisha, Here is a code example: use Bio::DB::GenBank; use Bio::DB::Query::GenBank; $query = "Arabidopsis[ORGN] AND topoisomerase[TITL]"; $query_obj = Bio::DB::Query::GenBank->new(-db => 'nucleotide', -query => $query ); $gb_obj = Bio::DB::GenBank->new; $stream_obj = $gb_obj->get_Stream_by_query($query_obj); while ($seq_obj = $stream_obj->next_seq) { # do something with the sequence object print $seq_obj->display_id, "\t", $seq_obj->length, "\n"; } For information on fields: http://www.ncbi.nlm.nih.gov/entrez/query/static/help/Summary_Matrices.html Brian O. -----Original Message----- From: bioperl-l-bounces@portal.open-bio.org [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Alisha Holloway Sent: Thursday, February 03, 2005 2:32 PM To: bioperl-l@bioperl.org Subject: [Bioperl-l] search by keyword I would like to search genbank using for sequences using a keyword (e.g. a CG number). Which module would I use for this task? I have found the modules for searching by accession number, ID, etc, but can't figure out how to search by keyword. Many thanks in advance, Alisha -- Alisha Holloway Postdoctoral Fellow Section of Evolution & Ecology 3347 Storer Hall University of California Davis, CA 95616 530-752-4253 Office 512-297-3958 Cell 530-752-1449 Fax _______________________________________________ Bioperl-l mailing list Bioperl-l@portal.open-bio.org http://portal.open-bio.org/mailman/listinfo/bioperl-l From Peter.Robinson at t-online.de Sun Feb 6 12:17:07 2005 From: Peter.Robinson at t-online.de (Peter Robinson) Date: Sun Feb 6 12:12:18 2005 Subject: [Bioperl-l] Entrez Gene and bioperl-db In-Reply-To: <1107558456.6594.104.camel@poblano.health.unm.edu> References: <2ED9C47A-5898-11D9-AC01-000A959EB4C4@gmx.net> <1104792001.3186.17.camel@localhost.localdomain> <0F5A3AE4-5DDA-11D9-AA3C-000393C44276@duke.edu> <1104871954.3102.24.camel@localhost.localdomain> <1DA5FD5C-5E94-11D9-9C0C-000393C44276@duke.edu> <1105044266.3084.27.camel@localhost.localdomain> <1105959962.21808.15.camel@localhost.localdomain> <1107558456.6594.104.camel@poblano.health.unm.edu> Message-ID: <20050206171707.GA7348@anna> On Fri, Feb 04, 2005 at 04:07:36PM -0700, Stephen L. Mathias wrote: > Hi Peter, > (....) On Mon, 2005-01-17 at 04:06, Peter Robinson wrote: > > Hi list, > > > > > 3) In the meantime I have also gotten a lex/yacc parser in C to parse > > the species-specific Gene files (which is by far the most interesting > > file in the Entrez gene system). In principle this approach could be > > done in Perl -- straightforward but a lot of detail work. I will be > > needing this kind of thing for my work, so I will continue to work on > > this, and once it is bug-free in C I will think about ways of porting it > > to Bioperl (this might take a while). As I mentioned before on this > > list, if anybody else can do this more quickly please go ahead (but drop > > me a line); on the other hand, collaborators who like the idea of > > writing a grammer in the style of lex/yacc or ANTLR are also welcome. > > I've written a script that uses Parse::RecDescent and an associated > grammar to parse the EntrezGene ASN.1 files. Actually, I've only tested > it on the human file, but I assume it will work for the rest as well. > According to my (admittedly shallow) understanding, Parse::RecDescent > grammars work in a fundamentally different way than yacc grammars do. > However, it is pure Perl. > > The script does not create bioperl objects; it simply converts the > records into large data structures that more or less mirror the ASN.1. > I take these and store the bits I want in a database. It would be easy > enough to convert to bioperl objects. However, you may not want to take > this approach as the parser itself is pretty slow (some examples > below). My familiarity with the bioperl object model is a little rusty, > but *a lot* of instantiation would need to be done to fully encapsulate > the data represented in an EntrezGene record. I'm guessing that the > additional time required would be considerable. > > The parser takes a second or two for most genes, however this goes up > dramatically for larger records. Here are some examples from a little > test file run on a box with fairly fast processors (2.8GHz/1MB Cache > Xeon): > Parsing Record 1 (439656 bytes) > Success for gene BRCA1 (LocusID 672). Time: 2 minutes and 6 seconds. > Parsing Record 2 (224148 bytes) > Success for gene CFTR (LocusID 1080). Time: 33 seconds. > Parsing Record 3 (45261 bytes) > Success for gene CNR1 (LocusID 1268). Time: 1 second. > Parsing Record 4 (570419 bytes) > Success for gene COX2 (LocusID 4513). Time: 5 minutes and 30 seconds. > Parsing Record 5 (40860 bytes) > Success for gene CYP1B1 (LocusID 1545). Time: 1 second. > Parsing Record 6 (42362 bytes) > Success for gene SRY (LocusID 6736). Time: 2 seconds. > Parsing Record 7 (110754 bytes) > Success for gene TRPV1 (LocusID 7442). Time: 7 seconds. > > It may very well be possible to speed this thing up. This was my first > foray into Parse::RecDescent land, and it was somewhat, um, painful to > get it working at all. At this point, I'm not inclined to spend any > more time on it. It works for my purposes. > > At any rate, if you (or anyone else on the list) are interested I'd be > happy to post the code. > > -Steve > -- > ( Stephen L. Mathias, Ph.D. ( s m a t h i a s ( > ) Office of Biocomputing ) @ p o b l a n o ) > ( UNM School of Medicine ( . h e a l t h . ( > ) ) u n m . e d u ) > ( http://poblano.health.unm.edu/ ( Hi Steve, in the meantime I have started to set up a Java program unsing an ANTLR grammar to parse the gene ASN.1 files. It is about half of an alpha version but it works more or less. Given the size of the species specific ASN.1 files and the fact that many users would more or less like to parse the entire things for various purposes (myself at any rate), performance is an important issue. As I understand it, antlr also generates recursive descent parsers, but the performance seems to be much better, at least so far. At this point it is looking like it will take me some time to finish up the Java parser (if I ever do), so if you would like to take the lead on this and see if your parser can be adapted to BioPerl, please do so. I plan to continue slowly improving my antlr parser, and if it seems to work well enough, I would try to see if a bioperl version with reasonable performance could be made of it. Realistically speaking that could be Autumn or Christmas though. And yes, I would be interested in seeing your code. -peter From jason.stajich at duke.edu Sun Feb 6 16:24:10 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Sun Feb 6 16:21:44 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: <3602ed0ee8c74edad3078fce3be9152d@nmrc.navy.mil> References: <2e8e246e128476ca92e5e8127968f1ed@nmrc.navy.mil> <8bd81fbab3a42b74a61351a95c5de2e0@duke.edu> <3602ed0ee8c74edad3078fce3be9152d@nmrc.navy.mil> Message-ID: <12b43b430b1cc4ea8dddb3be11d01b18@duke.edu> Telling us "tests fail" doesn't give enough information for someone to help you. Note that on OSX you can also install Bioperl via fink and this may be easier for you. Failed tests for Bundle::BioPerl means you probably wouldn't have installed all the auxiliary modules, but it depends on which ones you forced through that would make a difference. You need some C libraries installed to make use of some of the the XML parser libraries for example, but this is not relevant to RemoteBlast. At least these modules are needed to get Bio::Tools::Run::RemoteBlast running - I know this by looking at the use statements in the module its self and the test in t/RemoteBlast.t. You can always test to see if a module can be loaded by doing 'perl PATH/To/Module'. Does this succeed for the modules in question? IO::String, LWP, LWP::UserAgent Check to see what is actually installed and in your PERL5LIB path. Are you do the install in the system perl directory or your local directory by providing the PREFIX option? $ perldoc LWP $ perldoc HTTP::Request::Common $ perldoc HTML::Parser We can't really diagnose much without specific errors so if you could describe exactly what fails wrt RemoteBlast that would make it possible for us to help. If you run the tests in the bioperl core package what kind of messages do you get. $ export BIOPERLDEBUG=1 $ perl -I. -Ilib t/RemoteBlast -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 6, 2005, at 4:00 PM, Arya Akmal wrote: > Yes, I did in fact install Bundle::Bioperl ... although not quite > completely, it would appear. There were a very large number of failed > tests, so I forced the installation. I can, for instance, retrieve > genbank sequences, but cannot perform remote BLAST queries at NCBI. So > this would seem to indicate that I have installed at least part of the > HTTP::Request::Common module, but apparently not > Bio::Tools::Run::RemoteBlast. > > thanks again. > > -arya > > On Feb 5, 2005, at 11:31 AM, Jason Stajich wrote: > >> You need to install the dependancies if you want all of the >> functionality. >> >> When you tried to install from CPAN did you install Bundle::BioPerl? >> This is described in the INSTALL document. >> http://bioperl.org/Core/Latest/INSTALL >> >> -jason >> -- >> Jason Stajich >> jason.stajich at duke.edu >> http://www.duke.edu/~jes12/ >> >> On Feb 4, 2005, at 10:42 AM, Arya Akmal wrote: >> >>> Hello- >>> >>> I've had some trouble installing the bioperl bundle on Mac OSX >>> (specifically 10.3.7). I've tried both though cpan and by >>> downloading the bioperl tarfile and making it. The problem is that >>> a large number of the tests fail. I can do a forced install, but >>> find that a significant part of the functionality is missing ... as >>> an example, the HTML HeadParser.pm module is missing, so I cannot do >>> remote NCBI BLAST queries. Is this a common problem on OSX >>> platforms, and are there any workarounds? >>> >>> thanks. >>> >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l@portal.open-bio.org >>> http://portal.open-bio.org/mailman/listinfo/bioperl-l >>> >> > From kishorebioinfo at hotmail.com Mon Feb 7 00:38:34 2005 From: kishorebioinfo at hotmail.com (krishna kishore kommana) Date: Mon Feb 7 08:17:48 2005 Subject: [Bioperl-l] KRISHNA KISHORE, II M.Sc (Bioinformatics) student Message-ID: dear sir, i am doing my M.Sc Bioinformatics.now i am trying to built scoring matices in perl language.here i am doing with multiple sequences.while i am considered Ist sequence is the reference sequence,then this sequence is compare with remining sequences at a time by position. please, give the suggestion in this programe.i am waiting for your reply. thank you sir. sincerely kishore _________________________________________________________________ Trailblazer Narain Karthikeyan. Know more about him ‘n his life. http://server1.msn.co.in/sp04/tataracing/ Stay in the loop with Tata Racing! From apseyed at bu.edu Mon Feb 7 10:01:38 2005 From: apseyed at bu.edu (Patrice Seyed) Date: Mon Feb 7 10:57:11 2005 Subject: [Bioperl-l] bioperl-ext make problems Message-ID: <001401c50d25$ecda07b0$05a0299b@smallfry> Hello, I'm getting error when trying to install bioperl-ext, wondering if you could point me in the right direction. I run -eshell and -MCPAN, and then try to install the module: CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz Checking if your kit is complete... Looks good Writing Makefile for Bio::Ext::Align ERROR from evaluation of /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't locate Inline/MakeMaker.pm in @INC (@INC contains: /usr/local/IT/perl-5.8.6/lib/5.8.6/i686-linux /usr/local/IT/perl-5.8.6/lib/5.8.6 /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6/i686-linux /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6 /usr/local/IT/perl-5.8.6/lib/site_perl /root/.cpan/build/bioperl-ext-1.4 .) at ./Makefile.PL line 1. BEGIN failed--compilation aborted at ./Makefile.PL line 1. Running make test Make had some problems, maybe interrupted? Won't test Running make install Make had some problems, maybe interrupted? Won't install I then installed I/IN/INGY/Inline-0.44.tar.gz without complaint, and tried again: cpan> install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz Running make for B/BI/BIRNEY/bioperl-ext-1.4.tar.gz Is already unwrapped into directory /root/.cpan/build/bioperl-ext-1.4 Makefile.PL returned status 512 Running make test Make had some problems, maybe interrupted? Won't test Running make install Make had some problems, maybe interrupted? Won't install Another thing worth noting is that I had to do a force install for bioperl, bioperl-run, bioperl-db, bioperl-microarray, and bioperl-gui, because of make test errors for each one. I am running perl v5.8.6 and RHEL 3 variant with the 2.4.21-4.0.1.ELsmp kernel. Thanks in advance for any tips of this problem or getting around this type of problem. Patrice Patrice Seyed Linux System Administrator - LinGA RHCE, SCSA Boston University Medical Campus From jason.stajich at duke.edu Mon Feb 7 10:58:41 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Mon Feb 7 10:57:14 2005 Subject: Fwd: [Bioperl-l] bioperl on Mac OSX Message-ID: Please send your questions to the mailing list - I cannot be the only person answering questions. Begin forwarded message: > From: Arya Akmal > Date: February 7, 2005 10:46:04 AM EST > To: Jason Stajich > Subject: Re: [Bioperl-l] bioperl on Mac OSX > > The modules you mentions can be loaded: > > >:~$ perl /Library/Perl/5.8.1/IO/String.pm > >:~$ perl /Library/Perl/5.8.1/LWP > >:~$ perl /Library/Perl/5.8.1/LWP.pm > >:~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm > >:~$ > > The problem seems to be with HTML::Parser: > > >:~$ perldoc HTML::Parser > >No documentation found for "HTML::Parser". > >:~$ > > The only modules I have under HTML are Form.pm and Tagset.pm. > Apparently, I am missing a module called HeadParser.pm: > > DB<4> use Bio::Perl; > > DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); > > DB<6> $blast_result = blast_sequence($seq_object) > > -------------------- WARNING --------------------- > MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi > User-Agent: libwww-perl/5.803 > Content-Length: 666 > Content-Type: application/x-www-form-urlencoded > > SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleoprote > in+A1+(Helix-destabilizing+protein)+(Single- > strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLFIGGL > SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR > EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV > IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG > GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGGSGSN > FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF&FOR > MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_SEAR > CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 > > > An Error Occurred > >

An Error Occurred

> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: > /sw/lib/perl5 /sw/lib/perl5/darwin > /System/Library/Perl/5.8.1/darwin-thread-multi-2level > /System/Library/Perl/5.8.1 > /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 > /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level > /Network/Library/Perl/5.8.1 /Network/Library/Perl .) > > > > --------------------------------------------------- > Submitted Blast for [ROA1_HUMAN] > > Finally, here are the results of running the Remote Blast tests: > > :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t > 1..6 > ok 1 > ok 2 > > -------------------- WARNING --------------------- > MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi > User-Agent: libwww-perl/5.803 > Content-Length: 1091 > Content-Type: application/x-www-form-urlencoded > > COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Egi%7C > 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoserine+d > ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESNARQG > QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK > HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRR > IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDAR > LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNM > AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGL > LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQ > MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQA > KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKS > RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDP > RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGK > VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR > TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e > -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp > > > An Error Occurred > >

An Error Occurred

> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib > /sw/lib/perl5 /sw/lib/perl5/darwin > /System/Library/Perl/5.8.1/darwin-thread-multi-2level > /System/Library/Perl/5.8.1 > /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 > /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level > /Network/Library/Perl/5.8.1 /Network/Library/Perl) > > > > --------------------------------------------------- > ok 3 > ok 4 # Unable to run RemoteBlast tests - probably no network > connection. > ok 5 # Unable to run RemoteBlast tests - probably no network > connection. > ok 6 # Unable to run RemoteBlast tests - probably no network > connection. > :~/Desktop$ > -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/enriched Size: 4843 bytes Desc: not available Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050207/84ce1f10/attachment.bin From amackey at pcbi.upenn.edu Mon Feb 7 11:22:12 2005 From: amackey at pcbi.upenn.edu (Aaron J. Mackey) Date: Mon Feb 7 11:19:44 2005 Subject: [Bioperl-l] bioperl-ext make problems In-Reply-To: <001401c50d25$ecda07b0$05a0299b@smallfry> References: <001401c50d25$ecda07b0$05a0299b@smallfry> Message-ID: From the CPAN prompt, type "look Bio::Ext::Align". Then: "perl Makefile.PL; make; make test" and see if you get more descriptive error messages. From your report we can't really figure out what's going on. -Aaron On Feb 7, 2005, at 10:01 AM, Patrice Seyed wrote: > Hello, > > I'm getting error when trying to install bioperl-ext, wondering if you > could > point me in the right direction. I run -eshell and -MCPAN, and then > try to > install the module: > > CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > > Checking if your kit is complete... > Looks good > Writing Makefile for Bio::Ext::Align > ERROR from evaluation of > /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't > locate > Inline/MakeMaker.pm in @INC (@INC contains: > /usr/local/IT/perl-5.8.6/lib/5.8.6/i686-linux > /usr/local/IT/perl-5.8.6/lib/5.8.6 > /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6/i686-linux > /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6 > /usr/local/IT/perl-5.8.6/lib/site_perl > /root/.cpan/build/bioperl-ext-1.4 .) > at ./Makefile.PL line 1. > BEGIN failed--compilation aborted at ./Makefile.PL line 1. > Running make test > Make had some problems, maybe interrupted? Won't test > Running make install > Make had some problems, maybe interrupted? Won't install > > > I then installed I/IN/INGY/Inline-0.44.tar.gz without complaint, and > tried > again: > > cpan> install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > Running make for B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > Is already unwrapped into directory /root/.cpan/build/bioperl-ext-1.4 > Makefile.PL returned status 512 > Running make test > Make had some problems, maybe interrupted? Won't test > Running make install > Make had some problems, maybe interrupted? Won't install > > > Another thing worth noting is that I had to do a force install for > bioperl, > bioperl-run, bioperl-db, bioperl-microarray, and bioperl-gui, because > of > make test errors for each one. I am running perl v5.8.6 and RHEL 3 > variant > with the 2.4.21-4.0.1.ELsmp kernel. Thanks in advance for any tips of > this > problem or getting around this type of problem. > > Patrice > > Patrice Seyed > Linux System Administrator - LinGA > RHCE, SCSA > Boston University Medical Campus > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- Aaron J. Mackey, Ph.D. Dept. of Biology, Goddard 212 University of Pennsylvania email: amackey@pcbi.upenn.edu 415 S. University Avenue office: 215-898-1205 Philadelphia, PA 19104-6017 fax: 215-746-6697 From mlemieux at bioinfo.ca Mon Feb 7 12:01:25 2005 From: mlemieux at bioinfo.ca (Madeleine Lemieux) Date: Mon Feb 7 11:56:49 2005 Subject: [Bioperl-l] bioperl on Mac OSX Message-ID: Arya, Here's an exerpt from a posting on Oct. 20, 2004: > I used fink to install libwww-pm581 and GD. I then forced the > installation of the BioPerl bundle using CPAN. This was necessary as > quite a few of the tests failed but not on things I cared about > especially. I then downloaded the latest BioPerl release and followed > the installation instructions. Worked fine. Fink will install Bioperl 1.4. Good luck, Madeleine From gyang at plantbio.uga.edu Mon Feb 7 12:05:59 2005 From: gyang at plantbio.uga.edu (Guojun Yang) Date: Mon Feb 7 12:02:28 2005 Subject: [Bioperl-l] bl2seq parsing confusion? In-Reply-To: Message-ID: <20050207120559.11a1dc05@dogwood.plantbio.uga.edu> Hi, all, I posted about the bl2seq report parsing. I worked on my windows and not in linux. In fact, I figured out that because the two machines have diff. versions of bioperl. The linux has a later version. It seems in this version, -readme can not be set to BPLite because it gave me an error saying "unallowed". But in the documentation, I can find many places talking about using next_feature, which doesn't seem to be functional in my situation. Is this really because of the later version use Bio::Tools::blast only? Thanks, Guojun ----- Original Message ----- From: Aaron J. Mackey To: Patrice Seyed Cc: bioperl-l Sent: Mon, 7 Feb 2005 11:22:12 -0500 Subject: Re: [Bioperl-l] bioperl-ext make problems > From the CPAN prompt, type "look Bio::Ext::Align". Then: "perl > Makefile.PL; make; make test" and see if you get more descriptive error > messages. From your report we can't really figure out what's going on. > > -Aaron > > On Feb 7, 2005, at 10:01 AM, Patrice Seyed wrote: > > > Hello, > > > > I'm getting error when trying to install bioperl-ext, wondering if you > > could > > point me in the right direction. I run -eshell and -MCPAN, and then > > try to > > install the module: > > > > CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > > > > Checking if your kit is complete... > > Looks good > > Writing Makefile for Bio::Ext::Align > > ERROR from evaluation of > > /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't > > locate > > Inline/MakeMaker.pm in @INC (@INC contains: > > /usr/local/IT/perl-5.8.6/lib/5.8.6/i686-linux > > /usr/local/IT/perl-5.8.6/lib/5.8.6 > > /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6/i686-linux > > /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6 > > /usr/local/IT/perl-5.8.6/lib/site_perl > > /root/.cpan/build/bioperl-ext-1.4 .) > > at ./Makefile.PL line 1. > > BEGIN failed--compilation aborted at ./Makefile.PL line 1. > > Running make test > > Make had some problems, maybe interrupted? Won't test > > Running make install > > Make had some problems, maybe interrupted? Won't install > > > > > > I then installed I/IN/INGY/Inline-0.44.tar.gz without complaint, and > > tried > > again: > > > > cpan> install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > > Running make for B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > > Is already unwrapped into directory /root/.cpan/build/bioperl-ext-1.4 > > Makefile.PL returned status 512 > > Running make test > > Make had some problems, maybe interrupted? Won't test > > Running make install > > Make had some problems, maybe interrupted? Won't install > > > > > > Another thing worth noting is that I had to do a force install for > > bioperl, > > bioperl-run, bioperl-db, bioperl-microarray, and bioperl-gui, because > > of > > make test errors for each one. I am running perl v5.8.6 and RHEL 3 > > variant > > with the 2.4.21-4.0.1.ELsmp kernel. Thanks in advance for any tips of > > this > > problem or getting around this type of problem. > > > > Patrice > > > > Patrice Seyed > > Linux System Administrator - LinGA > > RHCE, SCSA > > Boston University Medical Campus > > > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l@portal.open-bio.org > > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > > > > -- > Aaron J. Mackey, Ph.D. > Dept. of Biology, Goddard 212 > University of Pennsylvania email: amackey@pcbi.upenn.edu > 415 S. University Avenue office: 215-898-1205 > Philadelphia, PA 19104-6017 fax: 215-746-6697 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From awitney at sghms.ac.uk Mon Feb 7 11:40:26 2005 From: awitney at sghms.ac.uk (Adam Witney) Date: Mon Feb 7 12:09:28 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: Message-ID: Have you installed HTML::Parser? I have BioPerl running on OSX nicely. I always compile from source and haven't had any problems for several versions of BioPerl now. If installed correctly HeadParser.pm will appear here $site_perl/darwin-2level/HTML/HeadParser.pm Where $site_perl is probably for you /Library/Perl/5.8.1 Cheers Adam >> The modules you mentions can be loaded: >> >>> :~$ perl /Library/Perl/5.8.1/IO/String.pm >>> :~$ perl /Library/Perl/5.8.1/LWP >>> :~$ perl /Library/Perl/5.8.1/LWP.pm >>> :~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm >>> :~$ >> >> The problem seems to be with HTML::Parser: >> >>> :~$ perldoc HTML::Parser >>> No documentation found for "HTML::Parser". >>> :~$ >> >> The only modules I have under HTML are Form.pm and Tagset.pm. >> Apparently, I am missing a module called HeadParser.pm: >> >> DB<4> use Bio::Perl; >> >> DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); >> >> DB<6> $blast_result = blast_sequence($seq_object) >> >> -------------------- WARNING --------------------- >> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >> User-Agent: libwww-perl/5.803 >> Content-Length: 666 >> Content-Type: application/x-www-form-urlencoded >> >> SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleoprote >> in+A1+(Helix-destabilizing+protein)+(Single- >> strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLFIGGL >> SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR >> EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV >> IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG >> GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGGSGSN >> FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF&FOR >> MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_SEAR >> CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 >> >> >> An Error Occurred >> >>

An Error Occurred

>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: >> /sw/lib/perl5 /sw/lib/perl5/darwin >> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >> /System/Library/Perl/5.8.1 >> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >> /Network/Library/Perl/5.8.1 /Network/Library/Perl .) >> >> >> >> --------------------------------------------------- >> Submitted Blast for [ROA1_HUMAN] >> >> Finally, here are the results of running the Remote Blast tests: >> >> :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t >> 1..6 >> ok 1 >> ok 2 >> >> -------------------- WARNING --------------------- >> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >> User-Agent: libwww-perl/5.803 >> Content-Length: 1091 >> Content-Type: application/x-www-form-urlencoded >> >> COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Egi%7C >> 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoserine+d >> ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESNARQG >> QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK >> HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRR >> IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDAR >> LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNM >> AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGL >> LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQ >> MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQA >> KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKS >> RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDP >> RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGK >> VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR >> TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e >> -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp >> >> >> An Error Occurred >> >>

An Error Occurred

>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib >> /sw/lib/perl5 /sw/lib/perl5/darwin >> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >> /System/Library/Perl/5.8.1 >> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >> /Network/Library/Perl/5.8.1 /Network/Library/Perl) >> >> >> >> --------------------------------------------------- >> ok 3 >> ok 4 # Unable to run RemoteBlast tests - probably no network >> connection. >> ok 5 # Unable to run RemoteBlast tests - probably no network >> connection. >> ok 6 # Unable to run RemoteBlast tests - probably no network >> connection. >> :~/Desktop$ >> -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. From awitney at sghms.ac.uk Mon Feb 7 12:57:29 2005 From: awitney at sghms.ac.uk (Adam Witney) Date: Mon Feb 7 12:56:44 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: <246fab0898060b3c8aa0c4c3c4d77d93@nmrc.navy.mil> Message-ID: Well, I often have trouble installing from CPAN on OSX, hence always compiling from source... > Right ... that's what I figured. I have an HTML directory that only > contains 2 modules: Form.pm and Tagset.pm. But I'm wondering: Yes I have that HTML directory, but that is fro a different module and not below darwin-2level directory: $site_perl/HTML/Form.pm $site_perl/HTML/Tagset.pm $site_perl/darwin-2level/HTML/HeadParser.pm I can't really help with the problems below as I don't use CPAN much, you might want to try compiling from source, or do what another poster suggested and try fink http://fink.sourceforge.net Which in general is quite good for osx software Cheers Adam > 1) Why this module wasn't installed along with everything else in my > bioperl installation. Did I do something wrong? > > 2) How I know if there are any other modules that normally would have > been part of the distribution, but for some reason didn't get > installed. > > 3)How do I fix this problem? I don't seem to be able to make > HTML::HeadParser > > cpan> make HTML::HeadParser > Running make for module HTML::HeadParser > Running make for G/GA/GAAS/HTML-Parser-3.45.tar.gz > Is already unwrapped into directory > /Users/aryaakmal/.cpan/build/HTML-Parser-3.45 > > CPAN.pm: Going to build G/GA/GAAS/HTML-Parser-3.45.tar.gz > > Checking if your kit is complete... > Looks good > Writing Makefile for HTML::Parser > cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm > cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm > cp Parser.pm blib/lib/HTML/Parser.pm > cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm > cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm > cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm > cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm > /usr/bin/perl /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap > /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap Parser.xs >> Parser.xsc && mv Parser.xsc Parser.c > /usr/bin/perl mkhctype >hctype.h > /usr/bin/perl mkpfunc >pfunc.h > cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp > -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.45\" > -DXS_VERSION=\"3.45\" > "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" > -DMARKED_SECTION Parser.c > Running Mkbootstrap for HTML::Parser () > chmod 644 Parser.bs > rm -f blib/arch/auto/HTML/Parser/Parser.bundle > LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined > dynamic_lookup -L/usr/local/lib Parser.o -o > blib/arch/auto/HTML/Parser/Parser.bundle > ld: can't locate file for: -lbundle1.o > make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 > /usr/bin/make -- NOT OK > > cpan> > > On Feb 7, 2005, at 11:40 AM, Adam Witney wrote: > >> >> Have you installed HTML::Parser? >> >> I have BioPerl running on OSX nicely. I always compile from source and >> haven't had any problems for several versions of BioPerl now. >> >> If installed correctly HeadParser.pm will appear here >> >> $site_perl/darwin-2level/HTML/HeadParser.pm >> >> Where $site_perl is probably for you >> >> /Library/Perl/5.8.1 >> >> Cheers >> >> Adam >> >> >> >> >>>> The modules you mentions can be loaded: >>>> >>>>> :~$ perl /Library/Perl/5.8.1/IO/String.pm >>>>> :~$ perl /Library/Perl/5.8.1/LWP >>>>> :~$ perl /Library/Perl/5.8.1/LWP.pm >>>>> :~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm >>>>> :~$ >>>> >>>> The problem seems to be with HTML::Parser: >>>> >>>>> :~$ perldoc HTML::Parser >>>>> No documentation found for "HTML::Parser". >>>>> :~$ >>>> >>>> The only modules I have under HTML are Form.pm and Tagset.pm. >>>> Apparently, I am missing a module called HeadParser.pm: >>>> >>>> DB<4> use Bio::Perl; >>>> >>>> DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); >>>> >>>> DB<6> $blast_result = blast_sequence($seq_object) >>>> >>>> -------------------- WARNING --------------------- >>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>> User-Agent: libwww-perl/5.803 >>>> Content-Length: 666 >>>> Content-Type: application/x-www-form-urlencoded >>>> >>>> SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleopro >>>> te >>>> in+A1+(Helix-destabilizing+protein)+(Single- >>>> strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLFIG >>>> GL >>>> SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV >>>> SR >>>> EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK >>>> IV >>>> IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR >>>> GG >>>> GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGGSG >>>> SN >>>> FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF&F >>>> OR >>>> MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_SE >>>> AR >>>> CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 >>>> >>>> >>>> An Error Occurred >>>> >>>>

An Error Occurred

>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: >>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /System/Library/Perl/5.8.1 >>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl .) >>>> >>>> >>>> >>>> --------------------------------------------------- >>>> Submitted Blast for [ROA1_HUMAN] >>>> >>>> Finally, here are the results of running the Remote Blast tests: >>>> >>>> :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t >>>> 1..6 >>>> ok 1 >>>> ok 2 >>>> >>>> -------------------- WARNING --------------------- >>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>> User-Agent: libwww-perl/5.803 >>>> Content-Length: 1091 >>>> Content-Type: application/x-www-form-urlencoded >>>> >>>> COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Egi% >>>> 7C >>>> 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoserine >>>> +d >>>> ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESNAR >>>> QG >>>> QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQ >>>> IK >>>> HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAEST >>>> RR >>>> IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPD >>>> AR >>>> LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLN >>>> NM >>>> AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKE >>>> GL >>>> LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVT >>>> HQ >>>> MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELA >>>> QA >>>> KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAE >>>> KS >>>> RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEP >>>> DP >>>> RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDE >>>> GK >>>> VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADL >>>> LR >>>> TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e >>>> -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp >>>> >>>> >>>> An Error Occurred >>>> >>>>

An Error Occurred

>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib >>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /System/Library/Perl/5.8.1 >>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl) >>>> >>>> >>>> >>>> --------------------------------------------------- >>>> ok 3 >>>> ok 4 # Unable to run RemoteBlast tests - probably no network >>>> connection. >>>> ok 5 # Unable to run RemoteBlast tests - probably no network >>>> connection. >>>> ok 6 # Unable to run RemoteBlast tests - probably no network >>>> connection. >>>> :~/Desktop$ >>>> >> >> >> -- >> This message has been scanned for viruses and >> dangerous content by MailScanner, and is >> believed to be clean. >> > -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. From awitney at sghms.ac.uk Mon Feb 7 13:13:27 2005 From: awitney at sghms.ac.uk (Adam Witney) Date: Mon Feb 7 13:13:13 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: Message-ID: Hmm, I am no expert but you may have a problem with your perl installation, I just downloaded and built HTML::Parser with no problems How did you install Perl? Or are you using the default? > I have also tried using fink ... but I run into the same problem: > won't make, because it can't find -lbundle.o. I imagine I'll have the > same problem if I install directly from source. > > > > :~$ fink install html-parser-pm581 > /usr/bin/sudo /sw/bin/fink install html-parser-pm581 > Password: > Information about 1740 packages read in 0 seconds. > The following package will be installed or updated: > html-parser-pm581 > gzip -dc /sw/src/HTML-Parser-3.35.tar.gz | /sw/bin/tar -xf - > --no-same-owner --no-same-permissions > perl -pi -e 's,my \$ans = prompt,my \$ans = "y"; #prompt,g' Makefile.PL > /usr/bin/perl5.8.1 Makefile.PL PERL=/usr/bin/perl5.8.1 PREFIX=/sw > INSTALLPRIVLIB=/sw/lib/perl5/5.8.1 > INSTALLARCHLIB=/sw/lib/perl5/5.8.1/darwin-thread-multi-2level > INSTALLSITELIB=/sw/lib/perl5/5.8.1 > INSTALLSITEARCH=/sw/lib/perl5/5.8.1/darwin-thread-multi-2level > INSTALLMAN1DIR=/sw/share/man/man1 INSTALLMAN3DIR=/sw/share/man/man3 > INSTALLSITEMAN1DIR=/sw/share/man/man1 > INSTALLSITEMAN3DIR=/sw/share/man/man3 INSTALLBIN=/sw/bin > INSTALLSITEBIN=/sw/bin INSTALLSCRIPT=/sw/bin > > Perl-5.8 provide core support for Unicode strings. You can compile > HTML::Entities so that Unicode entities like € and € are > decoded into a string containing "\x{20AC}". If you select no to > the question below such entities will be left alone and only entities > in the Latin-1 range is decoded. > > Checking if your kit is complete... > Looks good > Writing Makefile for HTML::Parser > make > cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm > cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm > cp Parser.pm blib/lib/HTML/Parser.pm > cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm > cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm > cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm > cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm > /usr/bin/perl5.8.1 /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap > /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap Parser.xs >> Parser.xsc && mv Parser.xsc Parser.c > /usr/bin/perl5.8.1 mkhctype >hctype.h > /usr/bin/perl5.8.1 mkpfunc >pfunc.h > cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp > -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.35\" > -DXS_VERSION=\"3.35\" > "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" > -DMARKED_SECTION -DUNICODE_ENTITIES Parser.c > Running Mkbootstrap for HTML::Parser () > chmod 644 Parser.bs > rm -f blib/arch/auto/HTML/Parser/Parser.bundle > LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined > dynamic_lookup -L/usr/local/lib Parser.o -o > blib/arch/auto/HTML/Parser/Parser.bundle > ld: warning -prebind has no effect with -bundle > ld: can't locate file for: -lbundle1.o > make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 > ### execution of make failed, exit code 2 > Failed: compiling html-parser-pm581-3.35-10 failed > :~$ > > On Feb 7, 2005, at 12:57 PM, Adam Witney wrote: > >> >> Well, I often have trouble installing from CPAN on OSX, hence always >> compiling from source... >> >>> Right ... that's what I figured. I have an HTML directory that only >>> contains 2 modules: Form.pm and Tagset.pm. But I'm wondering: >> >> Yes I have that HTML directory, but that is fro a different module and >> not >> below darwin-2level directory: >> >> $site_perl/HTML/Form.pm >> $site_perl/HTML/Tagset.pm >> $site_perl/darwin-2level/HTML/HeadParser.pm >> >> I can't really help with the problems below as I don't use CPAN much, >> you >> might want to try compiling from source, or do what another poster >> suggested >> and try fink >> >> http://fink.sourceforge.net >> >> Which in general is quite good for osx software >> >> Cheers >> >> Adam >> >> >>> 1) Why this module wasn't installed along with everything else in my >>> bioperl installation. Did I do something wrong? >>> >>> 2) How I know if there are any other modules that normally would have >>> been part of the distribution, but for some reason didn't get >>> installed. >>> >>> 3)How do I fix this problem? I don't seem to be able to make >>> HTML::HeadParser >>> >>> cpan> make HTML::HeadParser >>> Running make for module HTML::HeadParser >>> Running make for G/GA/GAAS/HTML-Parser-3.45.tar.gz >>> Is already unwrapped into directory >>> /Users/aryaakmal/.cpan/build/HTML-Parser-3.45 >>> >>> CPAN.pm: Going to build G/GA/GAAS/HTML-Parser-3.45.tar.gz >>> >>> Checking if your kit is complete... >>> Looks good >>> Writing Makefile for HTML::Parser >>> cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm >>> cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm >>> cp Parser.pm blib/lib/HTML/Parser.pm >>> cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm >>> cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm >>> cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm >>> cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm >>> /usr/bin/perl /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap >>> /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap >>> Parser.xs >>>> Parser.xsc && mv Parser.xsc Parser.c >>> /usr/bin/perl mkhctype >hctype.h >>> /usr/bin/perl mkpfunc >pfunc.h >>> cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp >>> -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.45\" >>> -DXS_VERSION=\"3.45\" >>> "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" >>> -DMARKED_SECTION Parser.c >>> Running Mkbootstrap for HTML::Parser () >>> chmod 644 Parser.bs >>> rm -f blib/arch/auto/HTML/Parser/Parser.bundle >>> LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined >>> dynamic_lookup -L/usr/local/lib Parser.o -o >>> blib/arch/auto/HTML/Parser/Parser.bundle >>> ld: can't locate file for: -lbundle1.o >>> make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 >>> /usr/bin/make -- NOT OK >>> >>> cpan> >>> >>> On Feb 7, 2005, at 11:40 AM, Adam Witney wrote: >>> >>>> >>>> Have you installed HTML::Parser? >>>> >>>> I have BioPerl running on OSX nicely. I always compile from source >>>> and >>>> haven't had any problems for several versions of BioPerl now. >>>> >>>> If installed correctly HeadParser.pm will appear here >>>> >>>> $site_perl/darwin-2level/HTML/HeadParser.pm >>>> >>>> Where $site_perl is probably for you >>>> >>>> /Library/Perl/5.8.1 >>>> >>>> Cheers >>>> >>>> Adam >>>> >>>> >>>> >>>> >>>>>> The modules you mentions can be loaded: >>>>>> >>>>>>> :~$ perl /Library/Perl/5.8.1/IO/String.pm >>>>>>> :~$ perl /Library/Perl/5.8.1/LWP >>>>>>> :~$ perl /Library/Perl/5.8.1/LWP.pm >>>>>>> :~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm >>>>>>> :~$ >>>>>> >>>>>> The problem seems to be with HTML::Parser: >>>>>> >>>>>>> :~$ perldoc HTML::Parser >>>>>>> No documentation found for "HTML::Parser". >>>>>>> :~$ >>>>>> >>>>>> The only modules I have under HTML are Form.pm and Tagset.pm. >>>>>> Apparently, I am missing a module called HeadParser.pm: >>>>>> >>>>>> DB<4> use Bio::Perl; >>>>>> >>>>>> DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); >>>>>> >>>>>> DB<6> $blast_result = blast_sequence($seq_object) >>>>>> >>>>>> -------------------- WARNING --------------------- >>>>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>>>> User-Agent: libwww-perl/5.803 >>>>>> Content-Length: 666 >>>>>> Content-Type: application/x-www-form-urlencoded >>>>>> >>>>>> SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleop >>>>>> ro >>>>>> te >>>>>> in+A1+(Helix-destabilizing+protein)+(Single- >>>>>> strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLF >>>>>> IG >>>>>> GL >>>>>> SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR >>>>>> AV >>>>>> SR >>>>>> EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV >>>>>> DK >>>>>> IV >>>>>> IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGG >>>>>> SR >>>>>> GG >>>>>> GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGG >>>>>> SG >>>>>> SN >>>>>> FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF >>>>>> &F >>>>>> OR >>>>>> MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_ >>>>>> SE >>>>>> AR >>>>>> CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 >>>>>> >>>>>> >>>>>> An Error Occurred >>>>>> >>>>>>

An Error Occurred

>>>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: >>>>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>>> /System/Library/Perl/5.8.1 >>>>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>>>> /Library/Perl >>>>>> /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl .) >>>>>> >>>>>> >>>>>> >>>>>> --------------------------------------------------- >>>>>> Submitted Blast for [ROA1_HUMAN] >>>>>> >>>>>> Finally, here are the results of running the Remote Blast tests: >>>>>> >>>>>> :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t >>>>>> 1..6 >>>>>> ok 1 >>>>>> ok 2 >>>>>> >>>>>> -------------------- WARNING --------------------- >>>>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>>>> User-Agent: libwww-perl/5.803 >>>>>> Content-Length: 1091 >>>>>> Content-Type: application/x-www-form-urlencoded >>>>>> >>>>>> COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Eg >>>>>> i% >>>>>> 7C >>>>>> 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoseri >>>>>> ne >>>>>> +d >>>>>> ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESN >>>>>> AR >>>>>> QG >>>>>> QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEF >>>>>> AQ >>>>>> IK >>>>>> HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAE >>>>>> ST >>>>>> RR >>>>>> IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV >>>>>> PD >>>>>> AR >>>>>> LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISN >>>>>> LN >>>>>> NM >>>>>> AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLEL >>>>>> KE >>>>>> GL >>>>>> LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVR >>>>>> VT >>>>>> HQ >>>>>> MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEE >>>>>> LA >>>>>> QA >>>>>> KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYA >>>>>> AE >>>>>> KS >>>>>> RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYT >>>>>> EP >>>>>> DP >>>>>> RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKAR >>>>>> DE >>>>>> GK >>>>>> VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFA >>>>>> DL >>>>>> LR >>>>>> TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e >>>>>> -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp >>>>>> >>>>>> >>>>>> An Error Occurred >>>>>> >>>>>>

An Error Occurred

>>>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib >>>>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>>> /System/Library/Perl/5.8.1 >>>>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>>>> /Library/Perl >>>>>> /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl) >>>>>> >>>>>> >>>>>> >>>>>> --------------------------------------------------- >>>>>> ok 3 >>>>>> ok 4 # Unable to run RemoteBlast tests - probably no network >>>>>> connection. >>>>>> ok 5 # Unable to run RemoteBlast tests - probably no network >>>>>> connection. >>>>>> ok 6 # Unable to run RemoteBlast tests - probably no network >>>>>> connection. >>>>>> :~/Desktop$ >>>>>> >>>> >>>> >>>> -- >>>> This message has been scanned for viruses and >>>> dangerous content by MailScanner, and is >>>> believed to be clean. >>>> >>> >> >> >> -- >> This message has been scanned for viruses and >> dangerous content by MailScanner, and is >> believed to be clean. >> > -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. From akmala at nmrc.navy.mil Mon Feb 7 12:47:04 2005 From: akmala at nmrc.navy.mil (Arya Akmal) Date: Mon Feb 7 14:32:07 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: References: Message-ID: <246fab0898060b3c8aa0c4c3c4d77d93@nmrc.navy.mil> Right ... that's what I figured. I have an HTML directory that only contains 2 modules: Form.pm and Tagset.pm. But I'm wondering: 1) Why this module wasn't installed along with everything else in my bioperl installation. Did I do something wrong? 2) How I know if there are any other modules that normally would have been part of the distribution, but for some reason didn't get installed. 3)How do I fix this problem? I don't seem to be able to make HTML::HeadParser cpan> make HTML::HeadParser Running make for module HTML::HeadParser Running make for G/GA/GAAS/HTML-Parser-3.45.tar.gz Is already unwrapped into directory /Users/aryaakmal/.cpan/build/HTML-Parser-3.45 CPAN.pm: Going to build G/GA/GAAS/HTML-Parser-3.45.tar.gz Checking if your kit is complete... Looks good Writing Makefile for HTML::Parser cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm cp Parser.pm blib/lib/HTML/Parser.pm cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm /usr/bin/perl /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap Parser.xs > Parser.xsc && mv Parser.xsc Parser.c /usr/bin/perl mkhctype >hctype.h /usr/bin/perl mkpfunc >pfunc.h cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.45\" -DXS_VERSION=\"3.45\" "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" -DMARKED_SECTION Parser.c Running Mkbootstrap for HTML::Parser () chmod 644 Parser.bs rm -f blib/arch/auto/HTML/Parser/Parser.bundle LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined dynamic_lookup -L/usr/local/lib Parser.o -o blib/arch/auto/HTML/Parser/Parser.bundle ld: can't locate file for: -lbundle1.o make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 /usr/bin/make -- NOT OK cpan> On Feb 7, 2005, at 11:40 AM, Adam Witney wrote: > > Have you installed HTML::Parser? > > I have BioPerl running on OSX nicely. I always compile from source and > haven't had any problems for several versions of BioPerl now. > > If installed correctly HeadParser.pm will appear here > > $site_perl/darwin-2level/HTML/HeadParser.pm > > Where $site_perl is probably for you > > /Library/Perl/5.8.1 > > Cheers > > Adam > > > > >>> The modules you mentions can be loaded: >>> >>>> :~$ perl /Library/Perl/5.8.1/IO/String.pm >>>> :~$ perl /Library/Perl/5.8.1/LWP >>>> :~$ perl /Library/Perl/5.8.1/LWP.pm >>>> :~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm >>>> :~$ >>> >>> The problem seems to be with HTML::Parser: >>> >>>> :~$ perldoc HTML::Parser >>>> No documentation found for "HTML::Parser". >>>> :~$ >>> >>> The only modules I have under HTML are Form.pm and Tagset.pm. >>> Apparently, I am missing a module called HeadParser.pm: >>> >>> DB<4> use Bio::Perl; >>> >>> DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); >>> >>> DB<6> $blast_result = blast_sequence($seq_object) >>> >>> -------------------- WARNING --------------------- >>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>> User-Agent: libwww-perl/5.803 >>> Content-Length: 666 >>> Content-Type: application/x-www-form-urlencoded >>> >>> SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleopro >>> te >>> in+A1+(Helix-destabilizing+protein)+(Single- >>> strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLFIG >>> GL >>> SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV >>> SR >>> EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK >>> IV >>> IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR >>> GG >>> GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGGSG >>> SN >>> FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF&F >>> OR >>> MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_SE >>> AR >>> CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 >>> >>> >>> An Error Occurred >>> >>>

An Error Occurred

>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: >>> /sw/lib/perl5 /sw/lib/perl5/darwin >>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>> /System/Library/Perl/5.8.1 >>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>> /Network/Library/Perl/5.8.1 /Network/Library/Perl .) >>> >>> >>> >>> --------------------------------------------------- >>> Submitted Blast for [ROA1_HUMAN] >>> >>> Finally, here are the results of running the Remote Blast tests: >>> >>> :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t >>> 1..6 >>> ok 1 >>> ok 2 >>> >>> -------------------- WARNING --------------------- >>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>> User-Agent: libwww-perl/5.803 >>> Content-Length: 1091 >>> Content-Type: application/x-www-form-urlencoded >>> >>> COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Egi% >>> 7C >>> 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoserine >>> +d >>> ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESNAR >>> QG >>> QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQ >>> IK >>> HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAEST >>> RR >>> IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPD >>> AR >>> LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLN >>> NM >>> AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKE >>> GL >>> LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVT >>> HQ >>> MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELA >>> QA >>> KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAE >>> KS >>> RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEP >>> DP >>> RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDE >>> GK >>> VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADL >>> LR >>> TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e >>> -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp >>> >>> >>> An Error Occurred >>> >>>

An Error Occurred

>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib >>> /sw/lib/perl5 /sw/lib/perl5/darwin >>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>> /System/Library/Perl/5.8.1 >>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>> /Network/Library/Perl/5.8.1 /Network/Library/Perl) >>> >>> >>> >>> --------------------------------------------------- >>> ok 3 >>> ok 4 # Unable to run RemoteBlast tests - probably no network >>> connection. >>> ok 5 # Unable to run RemoteBlast tests - probably no network >>> connection. >>> ok 6 # Unable to run RemoteBlast tests - probably no network >>> connection. >>> :~/Desktop$ >>> > > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > From akmala at nmrc.navy.mil Mon Feb 7 13:04:22 2005 From: akmala at nmrc.navy.mil (Arya Akmal) Date: Mon Feb 7 14:32:09 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: References: Message-ID: I have also tried using fink ... but I run into the same problem: won't make, because it can't find -lbundle.o. I imagine I'll have the same problem if I install directly from source. :~$ fink install html-parser-pm581 /usr/bin/sudo /sw/bin/fink install html-parser-pm581 Password: Information about 1740 packages read in 0 seconds. The following package will be installed or updated: html-parser-pm581 gzip -dc /sw/src/HTML-Parser-3.35.tar.gz | /sw/bin/tar -xf - --no-same-owner --no-same-permissions perl -pi -e 's,my \$ans = prompt,my \$ans = "y"; #prompt,g' Makefile.PL /usr/bin/perl5.8.1 Makefile.PL PERL=/usr/bin/perl5.8.1 PREFIX=/sw INSTALLPRIVLIB=/sw/lib/perl5/5.8.1 INSTALLARCHLIB=/sw/lib/perl5/5.8.1/darwin-thread-multi-2level INSTALLSITELIB=/sw/lib/perl5/5.8.1 INSTALLSITEARCH=/sw/lib/perl5/5.8.1/darwin-thread-multi-2level INSTALLMAN1DIR=/sw/share/man/man1 INSTALLMAN3DIR=/sw/share/man/man3 INSTALLSITEMAN1DIR=/sw/share/man/man1 INSTALLSITEMAN3DIR=/sw/share/man/man3 INSTALLBIN=/sw/bin INSTALLSITEBIN=/sw/bin INSTALLSCRIPT=/sw/bin Perl-5.8 provide core support for Unicode strings. You can compile HTML::Entities so that Unicode entities like € and € are decoded into a string containing "\x{20AC}". If you select no to the question below such entities will be left alone and only entities in the Latin-1 range is decoded. Checking if your kit is complete... Looks good Writing Makefile for HTML::Parser make cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm cp Parser.pm blib/lib/HTML/Parser.pm cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm /usr/bin/perl5.8.1 /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap Parser.xs > Parser.xsc && mv Parser.xsc Parser.c /usr/bin/perl5.8.1 mkhctype >hctype.h /usr/bin/perl5.8.1 mkpfunc >pfunc.h cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.35\" -DXS_VERSION=\"3.35\" "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" -DMARKED_SECTION -DUNICODE_ENTITIES Parser.c Running Mkbootstrap for HTML::Parser () chmod 644 Parser.bs rm -f blib/arch/auto/HTML/Parser/Parser.bundle LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined dynamic_lookup -L/usr/local/lib Parser.o -o blib/arch/auto/HTML/Parser/Parser.bundle ld: warning -prebind has no effect with -bundle ld: can't locate file for: -lbundle1.o make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 ### execution of make failed, exit code 2 Failed: compiling html-parser-pm581-3.35-10 failed :~$ On Feb 7, 2005, at 12:57 PM, Adam Witney wrote: > > Well, I often have trouble installing from CPAN on OSX, hence always > compiling from source... > >> Right ... that's what I figured. I have an HTML directory that only >> contains 2 modules: Form.pm and Tagset.pm. But I'm wondering: > > Yes I have that HTML directory, but that is fro a different module and > not > below darwin-2level directory: > > $site_perl/HTML/Form.pm > $site_perl/HTML/Tagset.pm > $site_perl/darwin-2level/HTML/HeadParser.pm > > I can't really help with the problems below as I don't use CPAN much, > you > might want to try compiling from source, or do what another poster > suggested > and try fink > > http://fink.sourceforge.net > > Which in general is quite good for osx software > > Cheers > > Adam > > >> 1) Why this module wasn't installed along with everything else in my >> bioperl installation. Did I do something wrong? >> >> 2) How I know if there are any other modules that normally would have >> been part of the distribution, but for some reason didn't get >> installed. >> >> 3)How do I fix this problem? I don't seem to be able to make >> HTML::HeadParser >> >> cpan> make HTML::HeadParser >> Running make for module HTML::HeadParser >> Running make for G/GA/GAAS/HTML-Parser-3.45.tar.gz >> Is already unwrapped into directory >> /Users/aryaakmal/.cpan/build/HTML-Parser-3.45 >> >> CPAN.pm: Going to build G/GA/GAAS/HTML-Parser-3.45.tar.gz >> >> Checking if your kit is complete... >> Looks good >> Writing Makefile for HTML::Parser >> cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm >> cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm >> cp Parser.pm blib/lib/HTML/Parser.pm >> cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm >> cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm >> cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm >> cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm >> /usr/bin/perl /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap >> /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap >> Parser.xs >>> Parser.xsc && mv Parser.xsc Parser.c >> /usr/bin/perl mkhctype >hctype.h >> /usr/bin/perl mkpfunc >pfunc.h >> cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp >> -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.45\" >> -DXS_VERSION=\"3.45\" >> "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" >> -DMARKED_SECTION Parser.c >> Running Mkbootstrap for HTML::Parser () >> chmod 644 Parser.bs >> rm -f blib/arch/auto/HTML/Parser/Parser.bundle >> LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined >> dynamic_lookup -L/usr/local/lib Parser.o -o >> blib/arch/auto/HTML/Parser/Parser.bundle >> ld: can't locate file for: -lbundle1.o >> make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 >> /usr/bin/make -- NOT OK >> >> cpan> >> >> On Feb 7, 2005, at 11:40 AM, Adam Witney wrote: >> >>> >>> Have you installed HTML::Parser? >>> >>> I have BioPerl running on OSX nicely. I always compile from source >>> and >>> haven't had any problems for several versions of BioPerl now. >>> >>> If installed correctly HeadParser.pm will appear here >>> >>> $site_perl/darwin-2level/HTML/HeadParser.pm >>> >>> Where $site_perl is probably for you >>> >>> /Library/Perl/5.8.1 >>> >>> Cheers >>> >>> Adam >>> >>> >>> >>> >>>>> The modules you mentions can be loaded: >>>>> >>>>>> :~$ perl /Library/Perl/5.8.1/IO/String.pm >>>>>> :~$ perl /Library/Perl/5.8.1/LWP >>>>>> :~$ perl /Library/Perl/5.8.1/LWP.pm >>>>>> :~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm >>>>>> :~$ >>>>> >>>>> The problem seems to be with HTML::Parser: >>>>> >>>>>> :~$ perldoc HTML::Parser >>>>>> No documentation found for "HTML::Parser". >>>>>> :~$ >>>>> >>>>> The only modules I have under HTML are Form.pm and Tagset.pm. >>>>> Apparently, I am missing a module called HeadParser.pm: >>>>> >>>>> DB<4> use Bio::Perl; >>>>> >>>>> DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); >>>>> >>>>> DB<6> $blast_result = blast_sequence($seq_object) >>>>> >>>>> -------------------- WARNING --------------------- >>>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>>> User-Agent: libwww-perl/5.803 >>>>> Content-Length: 666 >>>>> Content-Type: application/x-www-form-urlencoded >>>>> >>>>> SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleop >>>>> ro >>>>> te >>>>> in+A1+(Helix-destabilizing+protein)+(Single- >>>>> strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLF >>>>> IG >>>>> GL >>>>> SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR >>>>> AV >>>>> SR >>>>> EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV >>>>> DK >>>>> IV >>>>> IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGG >>>>> SR >>>>> GG >>>>> GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGG >>>>> SG >>>>> SN >>>>> FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF >>>>> &F >>>>> OR >>>>> MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_ >>>>> SE >>>>> AR >>>>> CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 >>>>> >>>>> >>>>> An Error Occurred >>>>> >>>>>

An Error Occurred

>>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: >>>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>> /System/Library/Perl/5.8.1 >>>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>>> /Library/Perl >>>>> /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl .) >>>>> >>>>> >>>>> >>>>> --------------------------------------------------- >>>>> Submitted Blast for [ROA1_HUMAN] >>>>> >>>>> Finally, here are the results of running the Remote Blast tests: >>>>> >>>>> :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t >>>>> 1..6 >>>>> ok 1 >>>>> ok 2 >>>>> >>>>> -------------------- WARNING --------------------- >>>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>>> User-Agent: libwww-perl/5.803 >>>>> Content-Length: 1091 >>>>> Content-Type: application/x-www-form-urlencoded >>>>> >>>>> COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Eg >>>>> i% >>>>> 7C >>>>> 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoseri >>>>> ne >>>>> +d >>>>> ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESN >>>>> AR >>>>> QG >>>>> QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEF >>>>> AQ >>>>> IK >>>>> HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAE >>>>> ST >>>>> RR >>>>> IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV >>>>> PD >>>>> AR >>>>> LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISN >>>>> LN >>>>> NM >>>>> AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLEL >>>>> KE >>>>> GL >>>>> LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVR >>>>> VT >>>>> HQ >>>>> MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEE >>>>> LA >>>>> QA >>>>> KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYA >>>>> AE >>>>> KS >>>>> RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYT >>>>> EP >>>>> DP >>>>> RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKAR >>>>> DE >>>>> GK >>>>> VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFA >>>>> DL >>>>> LR >>>>> TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e >>>>> -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp >>>>> >>>>> >>>>> An Error Occurred >>>>> >>>>>

An Error Occurred

>>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib >>>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>> /System/Library/Perl/5.8.1 >>>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>>> /Library/Perl >>>>> /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl) >>>>> >>>>> >>>>> >>>>> --------------------------------------------------- >>>>> ok 3 >>>>> ok 4 # Unable to run RemoteBlast tests - probably no network >>>>> connection. >>>>> ok 5 # Unable to run RemoteBlast tests - probably no network >>>>> connection. >>>>> ok 6 # Unable to run RemoteBlast tests - probably no network >>>>> connection. >>>>> :~/Desktop$ >>>>> >>> >>> >>> -- >>> This message has been scanned for viruses and >>> dangerous content by MailScanner, and is >>> believed to be clean. >>> >> > > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > From jason.stajich at duke.edu Mon Feb 7 14:54:29 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Mon Feb 7 14:51:30 2005 Subject: [Bioperl-l] bioperl on Mac OSX In-Reply-To: <246fab0898060b3c8aa0c4c3c4d77d93@nmrc.navy.mil> References: <246fab0898060b3c8aa0c4c3c4d77d93@nmrc.navy.mil> Message-ID: Appears you need to install Xcode. http://www.talkaboutmac.com/group/perl.macosx/messages/4773.html -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 7, 2005, at 12:47 PM, Arya Akmal wrote: > Right ... that's what I figured. I have an HTML directory that only > contains 2 modules: Form.pm and Tagset.pm. But I'm wondering: > > 1) Why this module wasn't installed along with everything else in my > bioperl installation. Did I do something wrong? > > 2) How I know if there are any other modules that normally would have > been part of the distribution, but for some reason didn't get > installed. > > 3)How do I fix this problem? I don't seem to be able to make > HTML::HeadParser > > cpan> make HTML::HeadParser > Running make for module HTML::HeadParser > Running make for G/GA/GAAS/HTML-Parser-3.45.tar.gz > Is already unwrapped into directory > /Users/aryaakmal/.cpan/build/HTML-Parser-3.45 > > CPAN.pm: Going to build G/GA/GAAS/HTML-Parser-3.45.tar.gz > > Checking if your kit is complete... > Looks good > Writing Makefile for HTML::Parser > cp lib/HTML/Entities.pm blib/lib/HTML/Entities.pm > cp lib/HTML/LinkExtor.pm blib/lib/HTML/LinkExtor.pm > cp Parser.pm blib/lib/HTML/Parser.pm > cp lib/HTML/Filter.pm blib/lib/HTML/Filter.pm > cp lib/HTML/HeadParser.pm blib/lib/HTML/HeadParser.pm > cp lib/HTML/TokeParser.pm blib/lib/HTML/TokeParser.pm > cp lib/HTML/PullParser.pm blib/lib/HTML/PullParser.pm > /usr/bin/perl /System/Library/Perl/5.8.1/ExtUtils/xsubpp -typemap > /System/Library/Perl/5.8.1/ExtUtils/typemap -typemap typemap > Parser.xs > Parser.xsc && mv Parser.xsc Parser.c > /usr/bin/perl mkhctype >hctype.h > /usr/bin/perl mkpfunc >pfunc.h > cc -c -g -pipe -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp > -fno-strict-aliasing -I/usr/local/include -Os -DVERSION=\"3.45\" > -DXS_VERSION=\"3.45\" > "-I/System/Library/Perl/5.8.1/darwin-thread-multi-2level/CORE" > -DMARKED_SECTION Parser.c > Running Mkbootstrap for HTML::Parser () > chmod 644 Parser.bs > rm -f blib/arch/auto/HTML/Parser/Parser.bundle > LD_RUN_PATH="" MACOSX_DEPLOYMENT_TARGET=10.3 cc -bundle -undefined > dynamic_lookup -L/usr/local/lib Parser.o -o > blib/arch/auto/HTML/Parser/Parser.bundle > ld: can't locate file for: -lbundle1.o > make: *** [blib/arch/auto/HTML/Parser/Parser.bundle] Error 1 > /usr/bin/make -- NOT OK > > cpan> > > On Feb 7, 2005, at 11:40 AM, Adam Witney wrote: > >> >> Have you installed HTML::Parser? >> >> I have BioPerl running on OSX nicely. I always compile from source and >> haven't had any problems for several versions of BioPerl now. >> >> If installed correctly HeadParser.pm will appear here >> >> $site_perl/darwin-2level/HTML/HeadParser.pm >> >> Where $site_perl is probably for you >> >> /Library/Perl/5.8.1 >> >> Cheers >> >> Adam >> >> >> >> >>>> The modules you mentions can be loaded: >>>> >>>>> :~$ perl /Library/Perl/5.8.1/IO/String.pm >>>>> :~$ perl /Library/Perl/5.8.1/LWP >>>>> :~$ perl /Library/Perl/5.8.1/LWP.pm >>>>> :~$ perl /Library/Perl/5.8.1/LWP/UserAgent.pm >>>>> :~$ >>>> >>>> The problem seems to be with HTML::Parser: >>>> >>>>> :~$ perldoc HTML::Parser >>>>> No documentation found for "HTML::Parser". >>>>> :~$ >>>> >>>> The only modules I have under HTML are Form.pm and Tagset.pm. >>>> Apparently, I am missing a module called HeadParser.pm: >>>> >>>> DB<4> use Bio::Perl; >>>> >>>> DB<5> $seq_object = get_sequence('swissprot',"ROA1_HUMAN"); >>>> >>>> DB<6> $blast_result = blast_sequence($seq_object) >>>> >>>> -------------------- WARNING --------------------- >>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>> User-Agent: libwww-perl/5.803 >>>> Content-Length: 666 >>>> Content-Type: application/x-www-form-urlencoded >>>> >>>> SERVICE=plain&QUERY=%3EROA1_HUMAN+Heterogeneous+nuclear+ribonucleopr >>>> ote >>>> in+A1+(Helix-destabilizing+protein)+(Single- >>>> strand+binding+protein)+(hnRNP+core+protein+A1).%0ASKSESPKEPEQLRKLFI >>>> GGL >>>> SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA >>>> VSR >>>> EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD >>>> KIV >>>> IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS >>>> RGG >>>> GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGFGGGS >>>> GSN >>>> FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF& >>>> FOR >>>> MAT_OBJECT=Alignment&COMPOSITION_BASED_STATISTICS=off&FILTER=L&CDD_S >>>> EAR >>>> CH=off&PROGRAM=blastp&CMD=Put&DATABASE=nr&EXPECT=1e-10 >>>> >>>> >>>> An Error Occurred >>>> >>>>

An Error Occurred

>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: >>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /System/Library/Perl/5.8.1 >>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl .) >>>> >>>> >>>> >>>> --------------------------------------------------- >>>> Submitted Blast for [ROA1_HUMAN] >>>> >>>> Finally, here are the results of running the Remote Blast tests: >>>> >>>> :~/Desktop$ perl -I. -Ilib t/RemoteBlast.t >>>> 1..6 >>>> ok 1 >>>> ok 2 >>>> >>>> -------------------- WARNING --------------------- >>>> MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi >>>> User-Agent: libwww-perl/5.803 >>>> Content-Length: 1091 >>>> Content-Type: application/x-www-form-urlencoded >>>> >>>> COMPOSITION_BASED_STATISTICS=off&CDD_SEARCH=off&FILTER=L&QUERY=%3Egi >>>> %7C >>>> 1786183%7Cgb%7CAAC73113.1%7C+(AE000111)+aspartokinase+I%2C+homoserin >>>> e+d >>>> ehydrogenase+I+%5BEscherichia+coli%5D%0AMRVLKFGGTSVANAERFLRVADILESNA >>>> RQG >>>> QVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFA >>>> QIK >>>> HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAES >>>> TRR >>>> IAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVP >>>> DAR >>>> LLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNL >>>> NNM >>>> AMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELK >>>> EGL >>>> LEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRV >>>> THQ >>>> MLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEEL >>>> AQA >>>> KEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAA >>>> EKS >>>> RRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTE >>>> PDP >>>> RDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARD >>>> EGK >>>> VLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFAD >>>> LLR >>>> TLSWKLGV&FORMAT_OBJECT=Alignment&EXPECT=1e >>>> -10&DATABASE=ecoli&SERVICE=plain&CMD=Put&PROGRAM=blastp >>>> >>>> >>>> An Error Occurred >>>> >>>>

An Error Occurred

>>>> 500 Can't locate HTML/HeadParser.pm in @INC (@INC contains: t . lib >>>> /sw/lib/perl5 /sw/lib/perl5/darwin >>>> /System/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /System/Library/Perl/5.8.1 >>>> /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 >>>> /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level >>>> /Network/Library/Perl/5.8.1 /Network/Library/Perl) >>>> >>>> >>>> >>>> --------------------------------------------------- >>>> ok 3 >>>> ok 4 # Unable to run RemoteBlast tests - probably no network >>>> connection. >>>> ok 5 # Unable to run RemoteBlast tests - probably no network >>>> connection. >>>> ok 6 # Unable to run RemoteBlast tests - probably no network >>>> connection. >>>> :~/Desktop$ >>>> >> >> >> -- >> This message has been scanned for viruses and >> dangerous content by MailScanner, and is >> believed to be clean. >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From mlemieux at bioinfo.ca Mon Feb 7 15:21:47 2005 From: mlemieux at bioinfo.ca (Madeleine Lemieux) Date: Mon Feb 7 15:19:30 2005 Subject: [Bioperl-l] bioperl on Mac OSX Message-ID: <1ae4d0e330a0ee669a44893951931c4f@bioinfo.ca> Arya, Do you have the file /usr/lib/bundle1.o? If not, check out http://q.queso.com/archives/001444 Regardless, you might want to check out http://search.cpan.org/~gaas/libwww-perl-5.803/lib/Bundle/LWP.pm Madeleine From apseyed at bu.edu Mon Feb 7 16:57:04 2005 From: apseyed at bu.edu (Patrice Seyed) Date: Mon Feb 7 16:52:06 2005 Subject: [Bioperl-l] bioperl-ext make problems In-Reply-To: Message-ID: <003201c50d5f$f5d4b7e0$7701a8c0@psyche> Here goes: ~] sudo perl -MCPAN -eshell Undefined value assigned to typeglob at (eval 16) line 15, line 11. Warning [/etc/inputrc line 11]: Invalid variable `mark-symlinked-directories' cpan shell -- CPAN exploration and modules installation (v1.7601) ReadLine support enabled cpan> after typing "look Bio::Ext::Align" it scanned cache and then dumped into: Removing previously used /root/.cpan/build/bioperl-ext-1.4 Working directory is /root/.cpan/build/bioperl-ext-1.4 # perl Makefile.PL Checking if your kit is complete... Looks good Writing Makefile for Bio::Ext::Align Please tell us where your Staden io_lib "read" library is installed: [/usr/local/lib] Please tell us where your Staden io_lib "Read.h" header is installed: [/usr/local/include/io_lib] Writing Makefile for Bio::SeqIO::staden::read Writing Makefile for Bio One or more DATA sections were not processed by Inline. "make" ended like this: read.xs:91: request for member `NBases' in something not a structure or union read.xs:91: request for member `NBases' in something not a structure or union read.xs:93: request for member `base' in something not a structure or union read.xs:94: request for member `prob_A' in something not a structure or union read.xs:94: request for member `prob_C' in something not a structure or union read.xs:95: request for member `prob_G' in something not a structure or union read.xs:95: request for member `prob_T' in something not a structure or union read.xs:144: request for member `ident' in something not a structure or union read.xs:145: request for member `info' in something not a structure or union make[2]: *** [read.o] Error 1 make[2]: Leaving directory `/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/_ Inline/build/Bio/SeqIO/staden/read' A problem was encountered while attempting to compile and install your Inline C code. The command that failed was: make The build directory was: /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/_Inline/build/Bio/SeqIO/s tade n/read To debug the problem, cd to the build directory, and inspect the output files. at -e line 0 INIT failed--call queue aborted. make[1]: *** [read.inl] Error 2 make[1]: Leaving directory `/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden' make: *** [subdirs] Error 2 -Patrice -----Original Message----- From: Aaron J. Mackey [mailto:amackey@pcbi.upenn.edu] Sent: Monday, February 07, 2005 11:22 AM To: Patrice Seyed Cc: bioperl-l Subject: Re: [Bioperl-l] bioperl-ext make problems From the CPAN prompt, type "look Bio::Ext::Align". Then: "perl Makefile.PL; make; make test" and see if you get more descriptive error messages. From your report we can't really figure out what's going on. -Aaron On Feb 7, 2005, at 10:01 AM, Patrice Seyed wrote: > Hello, > > I'm getting error when trying to install bioperl-ext, wondering if you > could > point me in the right direction. I run -eshell and -MCPAN, and then > try to > install the module: > > CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > > Checking if your kit is complete... > Looks good > Writing Makefile for Bio::Ext::Align > ERROR from evaluation of > /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't > locate > Inline/MakeMaker.pm in @INC (@INC contains: > /usr/local/IT/perl-5.8.6/lib/5.8.6/i686-linux > /usr/local/IT/perl-5.8.6/lib/5.8.6 > /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6/i686-linux > /usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6 > /usr/local/IT/perl-5.8.6/lib/site_perl > /root/.cpan/build/bioperl-ext-1.4 .) > at ./Makefile.PL line 1. > BEGIN failed--compilation aborted at ./Makefile.PL line 1. > Running make test > Make had some problems, maybe interrupted? Won't test > Running make install > Make had some problems, maybe interrupted? Won't install > > > I then installed I/IN/INGY/Inline-0.44.tar.gz without complaint, and > tried > again: > > cpan> install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > Running make for B/BI/BIRNEY/bioperl-ext-1.4.tar.gz > Is already unwrapped into directory /root/.cpan/build/bioperl-ext-1.4 > Makefile.PL returned status 512 > Running make test > Make had some problems, maybe interrupted? Won't test > Running make install > Make had some problems, maybe interrupted? Won't install > > > Another thing worth noting is that I had to do a force install for > bioperl, > bioperl-run, bioperl-db, bioperl-microarray, and bioperl-gui, because > of > make test errors for each one. I am running perl v5.8.6 and RHEL 3 > variant > with the 2.4.21-4.0.1.ELsmp kernel. Thanks in advance for any tips of > this > problem or getting around this type of problem. > > Patrice > > Patrice Seyed > Linux System Administrator - LinGA > RHCE, SCSA > Boston University Medical Campus > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- Aaron J. Mackey, Ph.D. Dept. of Biology, Goddard 212 University of Pennsylvania email: amackey@pcbi.upenn.edu 415 S. University Avenue office: 215-898-1205 Philadelphia, PA 19104-6017 fax: 215-746-6697 From amackey at pcbi.upenn.edu Mon Feb 7 20:54:45 2005 From: amackey at pcbi.upenn.edu (Aaron J. Mackey) Date: Mon Feb 7 20:51:26 2005 Subject: [Bioperl-l] bioperl-ext make problems In-Reply-To: <003201c50d5f$f5d4b7e0$7701a8c0@psyche> References: <003201c50d5f$f5d4b7e0$7701a8c0@psyche> Message-ID: <42081BE5.4080202@pcbi.upenn.edu> So do you actually have the Staden io-lib "Read" library installed? If not, this isn't going to work. -Aaron Patrice Seyed wrote: > Here goes: > > ~] sudo perl -MCPAN -eshell > Undefined value assigned to typeglob at (eval 16) line 15, line 11. > Warning [/etc/inputrc line 11]: > Invalid variable `mark-symlinked-directories' > > cpan shell -- CPAN exploration and modules installation (v1.7601) > ReadLine support enabled > > cpan> > > after typing "look Bio::Ext::Align" it scanned cache and then dumped into: > Removing previously used /root/.cpan/build/bioperl-ext-1.4 > Working directory is /root/.cpan/build/bioperl-ext-1.4 > > > # perl Makefile.PL > Checking if your kit is complete... > Looks good > Writing Makefile for Bio::Ext::Align > Please tell us where your Staden io_lib "read" library is installed: > [/usr/local/lib] > Please tell us where your Staden io_lib "Read.h" header is installed: > [/usr/local/include/io_lib] > Writing Makefile for Bio::SeqIO::staden::read > Writing Makefile for Bio > One or more DATA sections were not processed by Inline. > > "make" ended like this: > > read.xs:91: request for member `NBases' in something not a structure or > union > read.xs:91: request for member `NBases' in something not a structure or > union > read.xs:93: request for member `base' in something not a structure or union > read.xs:94: request for member `prob_A' in something not a structure or > union > read.xs:94: request for member `prob_C' in something not a structure or > union > read.xs:95: request for member `prob_G' in something not a structure or > union > read.xs:95: request for member `prob_T' in something not a structure or > union > read.xs:144: request for member `ident' in something not a structure or > union > read.xs:145: request for member `info' in something not a structure or union > make[2]: *** [read.o] Error 1 > make[2]: Leaving directory > `/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/_ > Inline/build/Bio/SeqIO/staden/read' > > A problem was encountered while attempting to compile and install your > Inline > C code. The command that failed was: > make > > The build directory was: > /root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/_Inline/build/Bio/SeqIO/s > tade > n/read > > To debug the problem, cd to the build directory, and inspect the output > files. > > at -e line 0 > INIT failed--call queue aborted. > make[1]: *** [read.inl] Error 2 > make[1]: Leaving directory > `/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden' > make: *** [subdirs] Error 2 > > > > -Patrice > > -----Original Message----- > From: Aaron J. Mackey [mailto:amackey@pcbi.upenn.edu] > Sent: Monday, February 07, 2005 11:22 AM > To: Patrice Seyed > Cc: bioperl-l > Subject: Re: [Bioperl-l] bioperl-ext make problems > > From the CPAN prompt, type "look Bio::Ext::Align". Then: "perl > Makefile.PL; make; make test" and see if you get more descriptive error > messages. From your report we can't really figure out what's going on. > > -Aaron > > On Feb 7, 2005, at 10:01 AM, Patrice Seyed wrote: > > >>Hello, >> >>I'm getting error when trying to install bioperl-ext, wondering if you >>could >>point me in the right direction. I run -eshell and -MCPAN, and then >>try to >>install the module: >> >>CPAN.pm: Going to build B/BI/BIRNEY/bioperl-ext-1.4.tar.gz >> >>Checking if your kit is complete... >>Looks good >>Writing Makefile for Bio::Ext::Align >>ERROR from evaluation of >>/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't >>locate >>Inline/MakeMaker.pm in @INC (@INC contains: >>/usr/local/IT/perl-5.8.6/lib/5.8.6/i686-linux >>/usr/local/IT/perl-5.8.6/lib/5.8.6 >>/usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6/i686-linux >>/usr/local/IT/perl-5.8.6/lib/site_perl/5.8.6 >>/usr/local/IT/perl-5.8.6/lib/site_perl >>/root/.cpan/build/bioperl-ext-1.4 .) >>at ./Makefile.PL line 1. >>BEGIN failed--compilation aborted at ./Makefile.PL line 1. >>Running make test >> Make had some problems, maybe interrupted? Won't test >>Running make install >> Make had some problems, maybe interrupted? Won't install >> >> >>I then installed I/IN/INGY/Inline-0.44.tar.gz without complaint, and >>tried >>again: >> >>cpan> install B/BI/BIRNEY/bioperl-ext-1.4.tar.gz >>Running make for B/BI/BIRNEY/bioperl-ext-1.4.tar.gz >> Is already unwrapped into directory /root/.cpan/build/bioperl-ext-1.4 >> Makefile.PL returned status 512 >>Running make test >> Make had some problems, maybe interrupted? Won't test >>Running make install >> Make had some problems, maybe interrupted? Won't install >> >> >>Another thing worth noting is that I had to do a force install for >>bioperl, >>bioperl-run, bioperl-db, bioperl-microarray, and bioperl-gui, because >>of >>make test errors for each one. I am running perl v5.8.6 and RHEL 3 >>variant >>with the 2.4.21-4.0.1.ELsmp kernel. Thanks in advance for any tips of >>this >>problem or getting around this type of problem. >> >>Patrice >> >>Patrice Seyed >>Linux System Administrator - LinGA >>RHCE, SCSA >>Boston University Medical Campus >> >> >> >>_______________________________________________ >>Bioperl-l mailing list >>Bioperl-l@portal.open-bio.org >>http://portal.open-bio.org/mailman/listinfo/bioperl-l >> >> > > -- > Aaron J. Mackey, Ph.D. > Dept. of Biology, Goddard 212 > University of Pennsylvania email: amackey@pcbi.upenn.edu > 415 S. University Avenue office: 215-898-1205 > Philadelphia, PA 19104-6017 fax: 215-746-6697 > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l From cain at cshl.org Mon Feb 7 23:31:37 2005 From: cain at cshl.org (Scott Cain) Date: Mon Feb 7 23:29:51 2005 Subject: [Bioperl-l] Bio::OntologyIO choking on current GO Message-ID: <1107837097.3423.53.camel@localhost.localdomain> Hello, It appears that Bio::OntologyIO is choking on the component.ontology file in GO cvs. I ran this simple script: #!/usr/bin/perl -w use strict; use Bio::OntologyIO; my $parser = Bio::OntologyIO->new(-format => "go", -file=> 'component.ontology'); while(my $ont = $parser->next_ontology()) { print "read ontology ",$ont->name()," with ", scalar($ont->get_root_terms)," root terms, and ", scalar($ont->get_leaf_terms)," leaf terms\n"; } when I run this through the debugger, it chokes inside of Graph.pm: Graph::__edges_to(/usr/lib/perl5/site_perl/5.8.5/Graph.pm:708): 708: my ($v, $i, $vi, $e, $o) = @_; This is Graph version 0.55. This script executes as expected with sofa.ontology. I've never looked at the OntologyIO code, so I'm hoping someone will have a simple explanation and/or fix. Thanks, Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. cain@cshl.org GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory From hlapp at gmx.net Tue Feb 8 02:23:36 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Tue Feb 8 02:19:44 2005 Subject: [Bioperl-l] Bio::OntologyIO choking on current GO In-Reply-To: <1107837097.3423.53.camel@localhost.localdomain> Message-ID: <58EC7142-79A2-11D9-ACEA-000A959EB4C4@gmx.net> Scott, what do you mean by 'choking'? Does the parser bail out with an error, does the machine start trashing, does the process come to a standstill due to swapping, or does the machine spit up transistors and capacitors through the drive slot? I just happened to parse (and load into biosql) the latest GO download this morning and I had zero problems ... If the VERSION definition depicts what the version is then that machine has 0.20104 of Graph.pm. The bioperl version is from cvs and newer than 1.4 but older than 1.5; dagflat.pm has the following Id tag: $Id: dagflat.pm,v 1.20 2004/08/13 02:20:37 allenday Exp $ Are you sure you're not just running this on a low-memory box? -hilmar On Monday, February 7, 2005, at 08:31 PM, Scott Cain wrote: > Hello, > > It appears that Bio::OntologyIO is choking on the component.ontology > file in GO cvs. I ran this simple script: > > #!/usr/bin/perl -w > use strict; > > use Bio::OntologyIO; > > my $parser = Bio::OntologyIO->new(-format => "go", > -file=> 'component.ontology'); > > while(my $ont = $parser->next_ontology()) { > print "read ontology ",$ont->name()," with ", > scalar($ont->get_root_terms)," root terms, and ", > scalar($ont->get_leaf_terms)," leaf terms\n"; > } > > when I run this through the debugger, it chokes inside of Graph.pm: > > Graph::__edges_to(/usr/lib/perl5/site_perl/5.8.5/Graph.pm:708): > 708: my ($v, $i, $vi, $e, $o) = @_; > > This is Graph version 0.55. This script executes as expected with > sofa.ontology. I've never looked at the OntologyIO code, so I'm hoping > someone will have a simple explanation and/or fix. > > Thanks, > Scott > > -- > ----------------------------------------------------------------------- > - > Scott Cain, Ph. D. > cain@cshl.org > GMOD Coordinator (http://www.gmod.org/) > 216-392-3087 > Cold Spring Harbor Laboratory > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From jason.stajich at duke.edu Tue Feb 8 09:24:33 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Tue Feb 8 09:21:28 2005 Subject: [Bioperl-l] Bio::OntologyIO choking on current GO In-Reply-To: <58EC7142-79A2-11D9-ACEA-000A959EB4C4@gmx.net> References: <58EC7142-79A2-11D9-ACEA-000A959EB4C4@gmx.net> Message-ID: I believe I fixed the problems interacting with Graph 0.5x before the 1.5.0 release but someone else is going to have to deal with the fact that we're using a legacy API for Graph now. Scott - do the tests pass for you? -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 8, 2005, at 2:23 AM, Hilmar Lapp wrote: > Scott, what do you mean by 'choking'? Does the parser bail out with an > error, does the machine start trashing, does the process come to a > standstill due to swapping, or does the machine spit up transistors > and capacitors through the drive slot? > > I just happened to parse (and load into biosql) the latest GO download > this morning and I had zero problems ... If the VERSION definition > depicts what the version is then that machine has 0.20104 of Graph.pm. > The bioperl version is from cvs and newer than 1.4 but older than 1.5; > dagflat.pm has the following Id tag: > $Id: dagflat.pm,v 1.20 2004/08/13 02:20:37 allenday Exp $ > > Are you sure you're not just running this on a low-memory box? > > -hilmar > > > On Monday, February 7, 2005, at 08:31 PM, Scott Cain wrote: > >> Hello, >> >> It appears that Bio::OntologyIO is choking on the component.ontology >> file in GO cvs. I ran this simple script: >> >> #!/usr/bin/perl -w >> use strict; >> >> use Bio::OntologyIO; >> >> my $parser = Bio::OntologyIO->new(-format => "go", >> -file=> 'component.ontology'); >> >> while(my $ont = $parser->next_ontology()) { >> print "read ontology ",$ont->name()," with ", >> scalar($ont->get_root_terms)," root terms, and ", >> scalar($ont->get_leaf_terms)," leaf terms\n"; >> } >> >> when I run this through the debugger, it chokes inside of Graph.pm: >> >> Graph::__edges_to(/usr/lib/perl5/site_perl/5.8.5/Graph.pm:708): >> 708: my ($v, $i, $vi, $e, $o) = @_; >> >> This is Graph version 0.55. This script executes as expected with >> sofa.ontology. I've never looked at the OntologyIO code, so I'm >> hoping >> someone will have a simple explanation and/or fix. >> >> Thanks, >> Scott >> >> -- >> ---------------------------------------------------------------------- >> -- >> Scott Cain, Ph. D. >> cain@cshl.org >> GMOD Coordinator (http://www.gmod.org/) >> 216-392-3087 >> Cold Spring Harbor Laboratory >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> >> > -- > ------------------------------------------------------------- > Hilmar Lapp email: lapp at gnf.org > GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 > ------------------------------------------------------------- > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050208/c5cf35d0/PGP.bin From faga at cshl.org Tue Feb 8 10:46:27 2005 From: faga at cshl.org (Ben Faga) Date: Tue Feb 8 15:17:58 2005 Subject: [Bioperl-l] AGP parser Message-ID: <1107877587.6307.1006.camel@ricotta> Hello, Is there a module to parse AGP formated files? (Format description: http://www.ncbi.nlm.nih.gov/Genbank/WGS.agpformat.html) It's a simple format to parse but I don't like to re-implement what has already been done. Thanks, Ben From julie.beaulieu at gmail.com Tue Feb 8 13:11:14 2005 From: julie.beaulieu at gmail.com (Julie Beaulieu) Date: Tue Feb 8 15:18:00 2005 Subject: [Bioperl-l] XML::Parse line 187 Message-ID: Hello, I keep getting the following error message when I try to parse a local Blast (xml) with blastxml: "not well formed (invalid token) at line 3, column 574, byte 673 at C:/Perl/site/lib/XML/Parser.pm" line 187. I know it has something to do with Expat but I have the right version and i can't figure out how to fix it. Can you help me? Thanks -- Julie Beaulieu From neil.saunders at unsw.edu.au Tue Feb 8 20:47:54 2005 From: neil.saunders at unsw.edu.au (Neil Saunders) Date: Tue Feb 8 20:43:41 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? Message-ID: <20050209014753.GA2847@psychro> dear all, I'm using Bio::SeqIO to pipe fasta sequences to an external program (hmmtop), as follows: while(my $seqin = $seqio->next_seq) { my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); This works nicely and spits out the 1 line STDOUT from hmmtop for each sequence. What I would really like to do is capture the STDOUT as a variable in my Perl script. I've read numerous Perl docs (e.g. the FAQ on capturing STDERR/STDOUT, perlipc, use of backticks versus open versus system and so on), but I'm unclear on how these relate to the example above. Is there some cunning bioperl-specific way of directing STDOUT from an external call to a perl variable, perhaps via a filehandle? your help much appreciated, Neil -- School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney 2052, Australia http://psychro.bioinformatics.unsw.edu.au/neil/index.php From heikki at ebi.ac.uk Wed Feb 9 06:23:28 2005 From: heikki at ebi.ac.uk (Heikki Lehvaslaiho) Date: Wed Feb 9 06:19:41 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? In-Reply-To: <20050209014753.GA2847@psychro> References: <20050209014753.GA2847@psychro> Message-ID: <200502091123.29655.heikki@ebi.ac.uk> Neil, In this case the best place to look inot is the Bio::SeqIO module documentation. From the SYNOPSIS: # The SeqIO system does have a filehandle binding. Most people find this # a little confusing, but it does mean you write the world's smallest # reformatter use Bio::SeqIO; $in = Bio::SeqIO->newFh(-file => "inputfilename" , -format => 'Fasta'); $out = Bio::SeqIO->newFh(-format => 'EMBL'); # World's shortest Fasta<->EMBL format converter: print $out $_ while <$in>; In other words, if you do not specify a filename the newFh method defaults to STDOUT for output. Yours, -Heikki On Wednesday 09 February 2005 01:47, Neil Saunders wrote: > dear all, > > I'm using Bio::SeqIO to pipe fasta sequences to an external program > (hmmtop), as follows: > > while(my $seqin = $seqio->next_seq) { > my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- -sf=FAS -pi=spred > -is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); > > > This works nicely and spits out the 1 line STDOUT from hmmtop for each > sequence. What I would really like to do is capture the STDOUT as a > variable in my Perl script. I've read numerous Perl docs (e.g. the FAQ > on capturing STDERR/STDOUT, perlipc, use of backticks versus open versus > system and so on), but I'm unclear on how these relate to the example > above. Is there some cunning bioperl-specific way of directing STDOUT > from an external call to a perl variable, perhaps via a filehandle? > > your help much appreciated, > Neil -- ______ _/ _/_____________________________________________________ _/ _/ http://www.ebi.ac.uk/mutations/ _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute _/ _/ _/ Wellcome Trust Genome Campus, Hinxton _/ _/ _/ Cambridge, CB10 1SD, United Kingdom _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 ___ _/_/_/_/_/________________________________________________________ From Marc.Logghe at devgen.com Wed Feb 9 08:43:29 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Wed Feb 9 08:39:23 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? Message-ID: It is probably not really optimal, but this should work: use IO::String; while(my $seqin = $seqio->next_seq) { my $seq = ''; my $io = IO::String->new($seq); my $fh; # print fasta to scalar $seq my $seqout = Bio::SeqIO->new(-fh => $io, '-format' => 'Fasta'); $seqout->write_seq($seqin); # pipe fasta to hmmtop and catch output open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo"; my ($s) = <$fh>; print $s; } HTH, Marc > -----Original Message----- > From: bioperl-l-bounces@portal.open-bio.org > [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Heikki > Lehvaslaiho > Sent: Wednesday, February 09, 2005 12:23 PM > To: bioperl-l@portal.open-bio.org > Cc: Neil Saunders; bioperl-l@bioperl.org > Subject: Re: [Bioperl-l] capture of STDOUT from write_seq? > > > Neil, > > In this case the best place to look inot is the Bio::SeqIO module > documentation. From the SYNOPSIS: > > # The SeqIO system does have a filehandle binding. Most > people find this > # a little confusing, but it does mean you write the > world's smallest > # reformatter > > use Bio::SeqIO; > $in = Bio::SeqIO->newFh(-file => "inputfilename" , > -format => 'Fasta'); > $out = Bio::SeqIO->newFh(-format => 'EMBL'); > # World's shortest Fasta<->EMBL format converter: > print $out $_ while <$in>; > > In other words, if you do not specify a filename the newFh > method defaults to > STDOUT for output. > > Yours, > -Heikki > > > On Wednesday 09 February 2005 01:47, Neil Saunders wrote: > > dear all, > > > > I'm using Bio::SeqIO to pipe fasta sequences to an external program > > (hmmtop), as follows: > > > > while(my $seqin = $seqio->next_seq) { > > my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- > -sf=FAS -pi=spred > > -is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); > > > > > > This works nicely and spits out the 1 line STDOUT from > hmmtop for each > > sequence. What I would really like to do is capture the STDOUT as a > > variable in my Perl script. I've read numerous Perl docs > (e.g. the FAQ > > on capturing STDERR/STDOUT, perlipc, use of backticks > versus open versus > > system and so on), but I'm unclear on how these relate to > the example > > above. Is there some cunning bioperl-specific way of > directing STDOUT > > from an external call to a perl variable, perhaps via a filehandle? > > > > your help much appreciated, > > Neil > > -- > ______ _/ _/_____________________________________________________ > _/ _/ http://www.ebi.ac.uk/mutations/ > _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk > _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute > _/ _/ _/ Wellcome Trust Genome Campus, Hinxton > _/ _/ _/ Cambridge, CB10 1SD, United Kingdom > _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 > ___ _/_/_/_/_/________________________________________________________ > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From Marc.Logghe at devgen.com Wed Feb 9 08:43:29 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Wed Feb 9 08:39:28 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? Message-ID: It is probably not really optimal, but this should work: use IO::String; while(my $seqin = $seqio->next_seq) { my $seq = ''; my $io = IO::String->new($seq); my $fh; # print fasta to scalar $seq my $seqout = Bio::SeqIO->new(-fh => $io, '-format' => 'Fasta'); $seqout->write_seq($seqin); # pipe fasta to hmmtop and catch output open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo"; my ($s) = <$fh>; print $s; } HTH, Marc > -----Original Message----- > From: bioperl-l-bounces@portal.open-bio.org > [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Heikki > Lehvaslaiho > Sent: Wednesday, February 09, 2005 12:23 PM > To: bioperl-l@portal.open-bio.org > Cc: Neil Saunders; bioperl-l@bioperl.org > Subject: Re: [Bioperl-l] capture of STDOUT from write_seq? > > > Neil, > > In this case the best place to look inot is the Bio::SeqIO module > documentation. From the SYNOPSIS: > > # The SeqIO system does have a filehandle binding. Most > people find this > # a little confusing, but it does mean you write the > world's smallest > # reformatter > > use Bio::SeqIO; > $in = Bio::SeqIO->newFh(-file => "inputfilename" , > -format => 'Fasta'); > $out = Bio::SeqIO->newFh(-format => 'EMBL'); > # World's shortest Fasta<->EMBL format converter: > print $out $_ while <$in>; > > In other words, if you do not specify a filename the newFh > method defaults to > STDOUT for output. > > Yours, > -Heikki > > > On Wednesday 09 February 2005 01:47, Neil Saunders wrote: > > dear all, > > > > I'm using Bio::SeqIO to pipe fasta sequences to an external program > > (hmmtop), as follows: > > > > while(my $seqin = $seqio->next_seq) { > > my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- > -sf=FAS -pi=spred > > -is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); > > > > > > This works nicely and spits out the 1 line STDOUT from > hmmtop for each > > sequence. What I would really like to do is capture the STDOUT as a > > variable in my Perl script. I've read numerous Perl docs > (e.g. the FAQ > > on capturing STDERR/STDOUT, perlipc, use of backticks > versus open versus > > system and so on), but I'm unclear on how these relate to > the example > > above. Is there some cunning bioperl-specific way of > directing STDOUT > > from an external call to a perl variable, perhaps via a filehandle? > > > > your help much appreciated, > > Neil > > -- > ______ _/ _/_____________________________________________________ > _/ _/ http://www.ebi.ac.uk/mutations/ > _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk > _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute > _/ _/ _/ Wellcome Trust Genome Campus, Hinxton > _/ _/ _/ Cambridge, CB10 1SD, United Kingdom > _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 > ___ _/_/_/_/_/________________________________________________________ > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From jason.stajich at duke.edu Wed Feb 9 11:03:00 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Wed Feb 9 10:59:56 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? In-Reply-To: References: Message-ID: I think you want a pipe at the end of that open - however, this might not work on long sequences though... open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo |"; Because what you want is reading and writing to the same filehandle you have to play some tricks. I think IO::Pipe or IPC::Run3 might help, but I couldn't get it to work right in my little bit of playing around. -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 9, 2005, at 8:43 AM, Marc Logghe wrote: > It is probably not really optimal, but this should work: > > use IO::String; > > while(my $seqin = $seqio->next_seq) { > my $seq = ''; > my $io = IO::String->new($seq); > my $fh; > > # print fasta to scalar $seq > my $seqout = Bio::SeqIO->new(-fh => $io, '-format' => 'Fasta'); > $seqout->write_seq($seqin); > > # pipe fasta to hmmtop and catch output > open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo"; > my ($s) = <$fh>; > print $s; > } > > HTH, > Marc > >> -----Original Message----- >> From: bioperl-l-bounces@portal.open-bio.org >> [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Heikki >> Lehvaslaiho >> Sent: Wednesday, February 09, 2005 12:23 PM >> To: bioperl-l@portal.open-bio.org >> Cc: Neil Saunders; bioperl-l@bioperl.org >> Subject: Re: [Bioperl-l] capture of STDOUT from write_seq? >> >> >> Neil, >> >> In this case the best place to look inot is the Bio::SeqIO module >> documentation. From the SYNOPSIS: >> >> # The SeqIO system does have a filehandle binding. Most >> people find this >> # a little confusing, but it does mean you write the >> world's smallest >> # reformatter >> >> use Bio::SeqIO; >> $in = Bio::SeqIO->newFh(-file => "inputfilename" , >> -format => 'Fasta'); >> $out = Bio::SeqIO->newFh(-format => 'EMBL'); >> # World's shortest Fasta<->EMBL format converter: >> print $out $_ while <$in>; >> >> In other words, if you do not specify a filename the newFh >> method defaults to >> STDOUT for output. >> >> Yours, >> -Heikki >> >> >> On Wednesday 09 February 2005 01:47, Neil Saunders wrote: >>> dear all, >>> >>> I'm using Bio::SeqIO to pipe fasta sequences to an external program >>> (hmmtop), as follows: >>> >>> while(my $seqin = $seqio->next_seq) { >>> my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- >> -sf=FAS -pi=spred >>> -is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); >>> >>> >>> This works nicely and spits out the 1 line STDOUT from >> hmmtop for each >>> sequence. What I would really like to do is capture the STDOUT as a >>> variable in my Perl script. I've read numerous Perl docs >> (e.g. the FAQ >>> on capturing STDERR/STDOUT, perlipc, use of backticks >> versus open versus >>> system and so on), but I'm unclear on how these relate to >> the example >>> above. Is there some cunning bioperl-specific way of >> directing STDOUT >>> from an external call to a perl variable, perhaps via a filehandle? >>> >>> your help much appreciated, >>> Neil >> >> -- >> ______ _/ _/_____________________________________________________ >> _/ _/ http://www.ebi.ac.uk/mutations/ >> _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk >> _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute >> _/ _/ _/ Wellcome Trust Genome Campus, Hinxton >> _/ _/ _/ Cambridge, CB10 1SD, United Kingdom >> _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 >> ___ _/_/_/_/_/________________________________________________________ >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050209/e2afc184/PGP-0001.bin From joke.reumers at gmail.com Wed Feb 9 07:58:50 2005 From: joke.reumers at gmail.com (Joke Reumers) Date: Wed Feb 9 11:00:03 2005 Subject: [Bioperl-l] blastall call crashed In-Reply-To: <20050209014753.GA2847@psychro> References: <20050209014753.GA2847@psychro> Message-ID: Hello. While trying to setup psort-B, I get a crash from bioperl (StandAloneBlast) calling blast: MSG: blastall call crashed: I've searched the mailing list archives, and the problem seems to have occurred before, but the solutions offered (setting the blast environment variables etc) are not sufficient to solve this problem. So before I start to dig, I would like to know if anyone solved it on their own? BTW, I installed the soft on both MacOS X and linux (gentoo) , so it doesn't seem to depend on OS... best regards & thanks in advance, Joke Reumers From jldai at yahoo.com Wed Feb 9 16:23:04 2005 From: jldai at yahoo.com (Jianli Dai) Date: Wed Feb 9 16:18:52 2005 Subject: [Bioperl-l] gff to embl or genbank Message-ID: <20050209212304.74089.qmail@web12310.mail.yahoo.com> I am trying to combine a gff file and a fasta to an embl or genbank file. I have tried Marc Logghe's suggestion (http://portal.open-bio.org/pipermail/bioperl-l/2004-June/016247.html). It converts every exon into 1 feature. I want to combined them into 1 gene which has several locations of exons. I have tried to put exons into a Bio::SeqFeature::Gene::GeneStructure object and then add_SeqFeature to the Bio::SeqIO fasta sequence. It gave me this error:"MSG: Bio::SeqFeature::Generic=HASH(0x8012b8) does not implement Bio::SeqFeature::Gene::ExonI". Please help. Jianli __________________________________ Do you Yahoo!? Yahoo! Mail - Find what you need with new enhanced search. http://info.mail.yahoo.com/mail_250 From muratem at eng.uah.edu Wed Feb 9 17:30:35 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Wed Feb 9 17:26:33 2005 Subject: [Bioperl-l] load_seqdatabase won't Message-ID: Hilmar I got the latest bioperl-db from the cvs server, and the latest biosql from the openbio-org cvs server, and things were going swell. I was trying to load some swissprot files and got the message: Could not store P97718: Can't locate object method "new" via package "Bio::Ontology::Ontology" at /usr/local/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/SimpleValueAdaptor.pm line 613, line 88 I looked at SimpleValueAdaptor.pm and it's calling the 'new' method with an argument,i.e., new(-name=>"Annotation Tags"). The perldoc for Bio::Ontology::Ontology shows a new constructor that doesn't take any arguments. I'm not experienced enough with OO perl to tell from the code whether it does or not. SimpleValueAdaptor.pm _did_not_ define Bio::Ontology::Ontology at the top of the file, but adding it doesn't fix the problem. There must be a simple answer, but it's beyond me. Any ideas? Thanks Mike From akmala at nmrc.navy.mil Wed Feb 9 15:40:41 2005 From: akmala at nmrc.navy.mil (Arya Akmal) Date: Wed Feb 9 20:11:21 2005 Subject: [Bioperl-l] MSG: acc does not exist, but acc # is OK Message-ID: <102f2a96d410fd31c8526187d2abeb68@nmrc.navy.mil> Hello- I get the following exception thrown up if I try to retrieve _any_ GenBank sequence: ------------- EXCEPTION ------------- MSG: acc does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /Library/Perl/5.8.1/Bio/DB/WebDBSeqI.pm:176 STACK toplevel test:47 -------------------------------------- in response to something as trivial as: $gb = new Bio::DB::GenBank(); $seq = $gb->get_Seq_by_acc('M29081'); I have no trouble with any of the other supported DBs (including RefSeq), but am consistently unable to retrieve anything using Bio::DB::GenBank. I've seen previous postings to this list (http://bioperl.org/pipermail/bioperl-l/2004-February/014962.html) on a similar problem, but I'm quite sure the accession numbers I'm trying are bona fide. I've tried many different accession numbers and IDs without success. Has anyone seen this type of problem before? thanks. From jason.stajich at duke.edu Wed Feb 9 18:57:42 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Wed Feb 9 20:11:35 2005 Subject: [Bioperl-l] gff to embl or genbank In-Reply-To: <20050209212304.74089.qmail@web12310.mail.yahoo.com> References: <20050209212304.74089.qmail@web12310.mail.yahoo.com> Message-ID: <79439e6ca29cd3ebe7f350bc669899a4@duke.edu> It is probably easiest to just group things and make a split location. You will have the most control over the objects you create. my %genes; while( my $f = $gff->next_feature ) { my ($group) = $feature->get_tag_values('Group'); # substitute group with whatever you have in the group field push @{$gene{$group}}, $feature; } # get a Bio::Seq object called $seq somehow, either by reading in a fasta sequence file, etc... while( my ($gene,$features) = each %genes ) { my $location = Bio::Location::Split->new(); for my $f ( @$features ) { $location->add_sub_Location($f->location); } my $genef = Bio::SeqFeature::Generic->new(-location =>$location, -primary_tag => 'CDS'); $seq->add_SeqFeature($genef); } my $seqio = Bio::SeqIO->new(-format => 'genbank'); $seqio->write_seq($seq); -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 9, 2005, at 4:23 PM, Jianli Dai wrote: > I am trying to combine a gff file and a fasta to an > embl or genbank file. I have tried Marc Logghe's > suggestion > (http://portal.open-bio.org/pipermail/bioperl-l/2004-June/016247.html). > It converts every exon into 1 feature. I want to > combined them into 1 gene which has several locations > of exons. I have tried to put exons into a > Bio::SeqFeature::Gene::GeneStructure object and then > add_SeqFeature to the Bio::SeqIO fasta sequence. It > gave me this error:"MSG: > Bio::SeqFeature::Generic=HASH(0x8012b8) does not > implement Bio::SeqFeature::Gene::ExonI". Please help. > Jianli > > > > > __________________________________ > Do you Yahoo!? > Yahoo! Mail - Find what you need with new enhanced search. > http://info.mail.yahoo.com/mail_250 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050209/3fdd543e/PGP.bin From neil.saunders at unsw.edu.au Wed Feb 9 23:51:39 2005 From: neil.saunders at unsw.edu.au (Neil Saunders) Date: Wed Feb 9 23:47:24 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? In-Reply-To: References: Message-ID: <20050210045139.GA27001@psychro> thanks guys, with Jason's extra pipe, a '2>/dev/null' to remove STDERR and a 'close $fh', this works nicely. I'm also glad to see I'm not the only one who finds IPC:: a bit tricky! On a related note, there seem to be a lot of tools in Bioperl to pipe data to an external process (e.g. Bio::SeqIO as described here, and Bio::Tools), but getting data back from that process requires either writing to then reading from a file or the filehandle tricks we have discussed. I wonder if building in the code to easily get STDOUT from a system call back into a Bioperl object is on the cards for future releases? Neil On Wed, Feb 09, 2005 at 11:03:00AM -0500, Jason Stajich wrote: > I think you want a pipe at the end of that open - however, this might > not work on long sequences though... > open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo |"; > > Because what you want is reading and writing to the same filehandle you > have to play some tricks. I think IO::Pipe or IPC::Run3 might help, > but I couldn't get it to work right in my little bit of playing around. > > -jason > -- > Jason Stajich > jason.stajich at duke.edu > http://www.duke.edu/~jes12/ > > On Feb 9, 2005, at 8:43 AM, Marc Logghe wrote: > > >It is probably not really optimal, but this should work: > > > >use IO::String; > > > >while(my $seqin = $seqio->next_seq) { > > my $seq = ''; > > my $io = IO::String->new($seq); > > my $fh; > > > > # print fasta to scalar $seq > > my $seqout = Bio::SeqIO->new(-fh => $io, '-format' => 'Fasta'); > > $seqout->write_seq($seqin); > > > > # pipe fasta to hmmtop and catch output > > open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo"; > > my ($s) = <$fh>; > > print $s; > >} > > > >HTH, > >Marc > > > >>-----Original Message----- > >>From: bioperl-l-bounces@portal.open-bio.org > >>[mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Heikki > >>Lehvaslaiho > >>Sent: Wednesday, February 09, 2005 12:23 PM > >>To: bioperl-l@portal.open-bio.org > >>Cc: Neil Saunders; bioperl-l@bioperl.org > >>Subject: Re: [Bioperl-l] capture of STDOUT from write_seq? > >> > >> > >>Neil, > >> > >>In this case the best place to look inot is the Bio::SeqIO module > >>documentation. From the SYNOPSIS: > >> > >> # The SeqIO system does have a filehandle binding. Most > >>people find this > >> # a little confusing, but it does mean you write the > >>world's smallest > >> # reformatter > >> > >> use Bio::SeqIO; > >> $in = Bio::SeqIO->newFh(-file => "inputfilename" , > >> -format => 'Fasta'); > >> $out = Bio::SeqIO->newFh(-format => 'EMBL'); > >> # World's shortest Fasta<->EMBL format converter: > >> print $out $_ while <$in>; > >> > >>In other words, if you do not specify a filename the newFh > >>method defaults to > >>STDOUT for output. > >> > >>Yours, > >> -Heikki > >> > >> > >>On Wednesday 09 February 2005 01:47, Neil Saunders wrote: > >>>dear all, > >>> > >>>I'm using Bio::SeqIO to pipe fasta sequences to an external program > >>>(hmmtop), as follows: > >>> > >>>while(my $seqin = $seqio->next_seq) { > >>>my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- > >>-sf=FAS -pi=spred > >>>-is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); > >>> > >>> > >>>This works nicely and spits out the 1 line STDOUT from > >>hmmtop for each > >>>sequence. What I would really like to do is capture the STDOUT as a > >>>variable in my Perl script. I've read numerous Perl docs > >>(e.g. the FAQ > >>>on capturing STDERR/STDOUT, perlipc, use of backticks > >>versus open versus > >>>system and so on), but I'm unclear on how these relate to > >>the example > >>>above. Is there some cunning bioperl-specific way of > >>directing STDOUT > >>>from an external call to a perl variable, perhaps via a filehandle? > >>> > >>>your help much appreciated, > >>>Neil > >> > >>-- > >>______ _/ _/_____________________________________________________ > >> _/ _/ http://www.ebi.ac.uk/mutations/ > >> _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk > >> _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute > >> _/ _/ _/ Wellcome Trust Genome Campus, Hinxton > >> _/ _/ _/ Cambridge, CB10 1SD, United Kingdom > >> _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 > >>___ _/_/_/_/_/________________________________________________________ > >>_______________________________________________ > >>Bioperl-l mailing list > >>Bioperl-l@portal.open-bio.org > >>http://portal.open-bio.org/mailman/listinfo/bioperl-l > >> > > > >_______________________________________________ > >Bioperl-l mailing list > >Bioperl-l@portal.open-bio.org > >http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney 2052, Australia http://psychro.bioinformatics.unsw.edu.au/neil/index.php From hlapp at gmx.net Thu Feb 10 03:13:54 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Thu Feb 10 03:09:35 2005 Subject: [Bioperl-l] load_seqdatabase won't In-Reply-To: Message-ID: Mike, did you run the test suite that comes with bioperl-db? Every test should pass or there is a problem. Bio::Ontology::Ontology->new does take arguments, they are apparently just not documented. I fixed this (in bioperl). At any rate, arguments have no role in locating a method in perl. The use statement should be present thoughi in the adaptor, I fixed this as well (in bioperl-db). If you add the following line use Bio::Ontology::Ontology; after the end of the top introductory documentation, where the other 'use' statements are, will that make your problem go away? If it doesn't, what happens if you issue $ perl -MBio::Ontology::Ontology -e '$obj = Bio::Ontology::Ontology->new(-name=>"blah");' (one single line despite any linebreaks your email reader may pretend to you) -hilmar On Wednesday, February 9, 2005, at 02:30 PM, Mike Muratet wrote: > Hilmar > > I got the latest bioperl-db from the cvs server, and the latest biosql > from the openbio-org cvs server, and things were going swell. I was > trying > to load some swissprot files and got the message: > > Could not store P97718: Can't locate object method "new" via package > "Bio::Ontology::Ontology" at > /usr/local/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/ > SimpleValueAdaptor.pm > line 613, line 88 > > I looked at SimpleValueAdaptor.pm and it's calling the 'new' method > with > an argument,i.e., new(-name=>"Annotation Tags"). The perldoc for > Bio::Ontology::Ontology shows a new constructor that doesn't take any > arguments. I'm not experienced enough with OO perl to tell from the > code > whether it does or not. SimpleValueAdaptor.pm _did_not_ define > Bio::Ontology::Ontology at the top of the file, but adding it doesn't > fix > the problem. > > There must be a simple answer, but it's beyond me. Any ideas? > > Thanks > > Mike > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From zhaoj at cs.man.ac.uk Thu Feb 10 05:39:13 2005 From: zhaoj at cs.man.ac.uk (Jun Zhao) Date: Thu Feb 10 05:35:27 2005 Subject: [Bioperl-l] getting database info from the blast report Message-ID: <420B39D1.6020505@cs.man.ac.uk> Hello, Does anybody know, in the blastn report, how to get the information about the database which each hit result is queried from? I am parsing the NCBIBlastn report. For who are familiar with that blast report, the detailed information about the DBSource is stored in a separate page from the blast report. Is there any tool from BioPerl could access that information? Thank you very much for any help! -- Best regards, Jun From jason.stajich at duke.edu Thu Feb 10 09:00:11 2005 From: jason.stajich at duke.edu (Jason Stajich) Date: Thu Feb 10 08:58:44 2005 Subject: [Bioperl-l] capture of STDOUT from write_seq? In-Reply-To: <20050210045139.GA27001@psychro> References: <20050210045139.GA27001@psychro> Message-ID: <631521f02d3205677e3a589a9711e966@duke.edu> You can't easily open bidirectional pipes with the standard open because it requires you to fork()/ threading and have two processes, one doing the writing and another doing the reading. That is what UNIX does when you have multiple pipes and one process will block while it waits for output from the other one. So I don't imagine a Bioperl-specific solution to any of this, it will have to be a Perl solution. In general I'd have to see a big win for this type of thing over just redirecting output to a temp file and then open the tempfile as a second step rather than trying to do it all simultaneously. I can imagine some UNIX specific soln's like binding sockets to files so the STDOUT redirection is to a virtual file which can be treated as a filehandle in perl. I think this is what you can do with IO::Pipe but just didn't have time to really get it working. Either way, you still have to do some sort of fork()/threading if you really want to write / read at the same time. My feeling is this starts to be a bit more complicated than most people want, esp if you can just redirect output to a file and do things sequentially. That's the soln we have chosen for most of Tools::Run apps where we pipe input and grab the output from a file. I'm sure we can try and whip up example code that actually works, but in general this will not be a bioperl solution as the objects just talk to generic filehandles and don't care how the underlying processes are being executed (STDOUT redirection or not). Happy for other people to weigh in on pros/cons. -jason -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ On Feb 9, 2005, at 11:51 PM, Neil Saunders wrote: > thanks guys, > > with Jason's extra pipe, a '2>/dev/null' to remove STDERR and a 'close > $fh', this works nicely. I'm also glad to see I'm not the only one who > finds IPC:: a bit tricky! > > On a related note, there seem to be a lot of tools in Bioperl to pipe > data to an external process (e.g. Bio::SeqIO as described here, and > Bio::Tools), but getting data back from that process requires either > writing to then reading from a file or the filehandle tricks we have > discussed. I wonder if building in the code to easily get STDOUT from > a > system call back into a Bioperl object is on the cards for future > releases? > > > Neil > > On Wed, Feb 09, 2005 at 11:03:00AM -0500, Jason Stajich wrote: >> I think you want a pipe at the end of that open - however, this might >> not work on long sequences though... >> open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred -is=pseudo >> |"; >> >> Because what you want is reading and writing to the same filehandle >> you >> have to play some tricks. I think IO::Pipe or IPC::Run3 might help, >> but I couldn't get it to work right in my little bit of playing >> around. >> >> -jason >> -- >> Jason Stajich >> jason.stajich at duke.edu >> http://www.duke.edu/~jes12/ >> >> On Feb 9, 2005, at 8:43 AM, Marc Logghe wrote: >> >>> It is probably not really optimal, but this should work: >>> >>> use IO::String; >>> >>> while(my $seqin = $seqio->next_seq) { >>> my $seq = ''; >>> my $io = IO::String->new($seq); >>> my $fh; >>> >>> # print fasta to scalar $seq >>> my $seqout = Bio::SeqIO->new(-fh => $io, '-format' => 'Fasta'); >>> $seqout->write_seq($seqin); >>> >>> # pipe fasta to hmmtop and catch output >>> open $fh, "echo '$seq' | hmmtop -if=-- -sf=FAS -pi=spred >>> -is=pseudo"; >>> my ($s) = <$fh>; >>> print $s; >>> } >>> >>> HTH, >>> Marc >>> >>>> -----Original Message----- >>>> From: bioperl-l-bounces@portal.open-bio.org >>>> [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Heikki >>>> Lehvaslaiho >>>> Sent: Wednesday, February 09, 2005 12:23 PM >>>> To: bioperl-l@portal.open-bio.org >>>> Cc: Neil Saunders; bioperl-l@bioperl.org >>>> Subject: Re: [Bioperl-l] capture of STDOUT from write_seq? >>>> >>>> >>>> Neil, >>>> >>>> In this case the best place to look inot is the Bio::SeqIO module >>>> documentation. From the SYNOPSIS: >>>> >>>> # The SeqIO system does have a filehandle binding. Most >>>> people find this >>>> # a little confusing, but it does mean you write the >>>> world's smallest >>>> # reformatter >>>> >>>> use Bio::SeqIO; >>>> $in = Bio::SeqIO->newFh(-file => "inputfilename" , >>>> -format => 'Fasta'); >>>> $out = Bio::SeqIO->newFh(-format => 'EMBL'); >>>> # World's shortest Fasta<->EMBL format converter: >>>> print $out $_ while <$in>; >>>> >>>> In other words, if you do not specify a filename the newFh >>>> method defaults to >>>> STDOUT for output. >>>> >>>> Yours, >>>> -Heikki >>>> >>>> >>>> On Wednesday 09 February 2005 01:47, Neil Saunders wrote: >>>>> dear all, >>>>> >>>>> I'm using Bio::SeqIO to pipe fasta sequences to an external program >>>>> (hmmtop), as follows: >>>>> >>>>> while(my $seqin = $seqio->next_seq) { >>>>> my $seqout = Bio::SeqIO->new('-file' => "| hmmtop -if=-- >>>> -sf=FAS -pi=spred >>>>> -is=pseudo", '-format' => 'Fasta'); $seqout->write_seq($seqin); >>>>> >>>>> >>>>> This works nicely and spits out the 1 line STDOUT from >>>> hmmtop for each >>>>> sequence. What I would really like to do is capture the STDOUT as >>>>> a >>>>> variable in my Perl script. I've read numerous Perl docs >>>> (e.g. the FAQ >>>>> on capturing STDERR/STDOUT, perlipc, use of backticks >>>> versus open versus >>>>> system and so on), but I'm unclear on how these relate to >>>> the example >>>>> above. Is there some cunning bioperl-specific way of >>>> directing STDOUT >>>>> from an external call to a perl variable, perhaps via a filehandle? >>>>> >>>>> your help much appreciated, >>>>> Neil >>>> >>>> -- >>>> ______ _/ >>>> _/_____________________________________________________ >>>> _/ _/ http://www.ebi.ac.uk/mutations/ >>>> _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk >>>> _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute >>>> _/ _/ _/ Wellcome Trust Genome Campus, Hinxton >>>> _/ _/ _/ Cambridge, CB10 1SD, United Kingdom >>>> _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 >>>> ___ >>>> _/_/_/_/_/________________________________________________________ >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l@portal.open-bio.org >>>> http://portal.open-bio.org/mailman/listinfo/bioperl-l >>>> >>> >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l@portal.open-bio.org >>> http://portal.open-bio.org/mailman/listinfo/bioperl-l >>> > > > > -- > School of Biotechnology and Biomolecular Sciences, > The University of New South Wales, > Sydney 2052, > Australia > > http://psychro.bioinformatics.unsw.edu.au/neil/index.php > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > -------------- next part -------------- A non-text attachment was scrubbed... Name: PGP.sig Type: application/pgp-signature Size: 186 bytes Desc: This is a digitally signed message part Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050210/c9e1a15c/PGP.bin From brian_osborne at cognia.com Thu Feb 10 09:22:57 2005 From: brian_osborne at cognia.com (Brian Osborne) Date: Thu Feb 10 09:22:46 2005 Subject: [Bioperl-l] getting database info from the blast report In-Reply-To: <420B39D1.6020505@cs.man.ac.uk> Message-ID: Jun, It's not clear what database information you're looking for. And when you say "separate page", do you mean Web page? For a reasonably complete list of the methods available to you, including ones that return database details, please see the SearchIO HOWTO (http://bioperl.org/HOWTOs). Brian O. -----Original Message----- From: bioperl-l-bounces@portal.open-bio.org [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Jun Zhao Sent: Thursday, February 10, 2005 5:39 AM To: bioperl-l@bioperl.org Subject: [Bioperl-l] getting database info from the blast report Hello, Does anybody know, in the blastn report, how to get the information about the database which each hit result is queried from? I am parsing the NCBIBlastn report. For who are familiar with that blast report, the detailed information about the DBSource is stored in a separate page from the blast report. Is there any tool from BioPerl could access that information? Thank you very much for any help! -- Best regards, Jun _______________________________________________ Bioperl-l mailing list Bioperl-l@portal.open-bio.org http://portal.open-bio.org/mailman/listinfo/bioperl-l From muratem at eng.uah.edu Thu Feb 10 11:33:21 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Thu Feb 10 11:29:06 2005 Subject: [Bioperl-l] load_seqdatabase won't In-Reply-To: Message-ID: Hilmar Problem solved. Turned out to be a missing dependancy. > > did you run the test suite that comes with bioperl-db? Every test > should pass or there is a problem. > All tests on Bio::Ontology::Ontology failed for the original reason. > Bio::Ontology::Ontology->new does take arguments, they are apparently > just not documented. I fixed this (in bioperl). At any rate, arguments > have no role in locating a method in perl. The use statement should be > present thoughi in the adaptor, I fixed this as well (in bioperl-db). > > If you add the following line > > use Bio::Ontology::Ontology; > > after the end of the top introductory documentation, where the other > 'use' statements are, will that make your problem go away? > > If it doesn't, what happens if you issue > > $ perl -MBio::Ontology::Ontology -e '$obj = > Bio::Ontology::Ontology->new(-name=>"blah");' > > (one single line despite any linebreaks your email reader may pretend > to you) > I added the line, and perl -MBio::Ontology revealed that Graph/Directed was missing. It used to be there. Strange. Reinstalled this module and everything works. Thanks Mike > > On Wednesday, February 9, 2005, at 02:30 PM, Mike Muratet wrote: > > > Hilmar > > > > I got the latest bioperl-db from the cvs server, and the latest biosql > > from the openbio-org cvs server, and things were going swell. I was > > trying > > to load some swissprot files and got the message: > > > > Could not store P97718: Can't locate object method "new" via package > > "Bio::Ontology::Ontology" at > > /usr/local/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/ > > SimpleValueAdaptor.pm > > line 613, line 88 > > > > I looked at SimpleValueAdaptor.pm and it's calling the 'new' method > > with > > an argument,i.e., new(-name=>"Annotation Tags"). The perldoc for > > Bio::Ontology::Ontology shows a new constructor that doesn't take any > > arguments. I'm not experienced enough with OO perl to tell from the > > code > > whether it does or not. SimpleValueAdaptor.pm _did_not_ define > > Bio::Ontology::Ontology at the top of the file, but adding it doesn't > > fix > > the problem. > > > > There must be a simple answer, but it's beyond me. Any ideas? > > > > Thanks > > > > Mike > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l@portal.open-bio.org > > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > > > > -- > ------------------------------------------------------------- > Hilmar Lapp email: lapp at gnf.org > GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 > ------------------------------------------------------------- > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From hlapp at gmx.net Fri Feb 11 01:28:25 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Fri Feb 11 01:28:48 2005 Subject: [Bioperl-l] load_seqdatabase won't In-Reply-To: Message-ID: <22A964C4-7BF6-11D9-AD82-000A959EB4C4@gmx.net> On Thursday, February 10, 2005, at 08:33 AM, Mike Muratet wrote: > Problem solved. Turned out to be a missing dependancy. > great that it works now - let me know when you hit the next bump. -hilmar -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From muratem at eng.uah.edu Fri Feb 11 10:20:42 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Fri Feb 11 10:16:23 2005 Subject: [Bioperl-l] Another small bump In-Reply-To: Message-ID: Hilmar The bioperl-db installation notes speaks of load_taxonomy.pl in the biosql distribution. I got the CVS tarball and there doesn't appear to be any perl in it at all. I see in the archives that there was some discussion about where it should live. Where does it live? Maybe there should be a 'beers for the developers' session in Detroit this summer.... Thanks Mike From brian_osborne at cognia.com Fri Feb 11 11:09:32 2005 From: brian_osborne at cognia.com (Brian Osborne) Date: Fri Feb 11 11:06:42 2005 Subject: [Bioperl-l] Another small bump In-Reply-To: Message-ID: Mike, Ah. Error in the bioperl-db document, that should be "scripts/load_ncbi_taxonomy.pl". Brian O. -----Original Message----- From: bioperl-l-bounces@portal.open-bio.org [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Mike Muratet Sent: Friday, February 11, 2005 10:21 AM To: Hilmar Lapp Cc: bioperl-l@bioperl.org Subject: [Bioperl-l] Another small bump Hilmar The bioperl-db installation notes speaks of load_taxonomy.pl in the biosql distribution. I got the CVS tarball and there doesn't appear to be any perl in it at all. I see in the archives that there was some discussion about where it should live. Where does it live? Maybe there should be a 'beers for the developers' session in Detroit this summer.... Thanks Mike _______________________________________________ Bioperl-l mailing list Bioperl-l@portal.open-bio.org http://portal.open-bio.org/mailman/listinfo/bioperl-l From muratem at eng.uah.edu Fri Feb 11 13:59:25 2005 From: muratem at eng.uah.edu (Mike Muratet) Date: Fri Feb 11 13:54:53 2005 Subject: [Bioperl-l] Another small bump In-Reply-To: Message-ID: On Fri, 11 Feb 2005, Brian Osborne wrote: > Mike, > > Ah. Error in the bioperl-db document, that should be > "scripts/load_ncbi_taxonomy.pl". > > Brian O. > > Brian I just checked the directory (again) where I unpacked the tarball--I don't see it. What was in the tarball: In /usr/local/lib/perl5/site_perl/5.8.0/bioperl-db/scripts/biosql bioentry2flat.pl cgi-bin clean_ontology.pl del-assocs-sql.pl drop_mysql_biosql_test_dbs freshen-annot.pl load_interpro.pl load_ontology.pl load_seqdatabase.pl merge-unique-ann.pl terms update-on-new-date.pl update-on-new-version.pl It's not in the subdirectories. I recall seeing it last time I built a database on another machine (which has been awhile). I haven't had any problems loading sequences, but it would be a handy table to have. Thanks Mike > -----Original Message----- > From: bioperl-l-bounces@portal.open-bio.org > [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Mike Muratet > Sent: Friday, February 11, 2005 10:21 AM > To: Hilmar Lapp > Cc: bioperl-l@bioperl.org > Subject: [Bioperl-l] Another small bump > > > Hilmar > > The bioperl-db installation notes speaks of load_taxonomy.pl in the biosql > distribution. I got the CVS tarball and there doesn't appear to be any > perl in it at all. I see in the archives that there was some discussion > about where it should live. Where does it live? > > Maybe there should be a 'beers for the developers' session in Detroit this > summer.... > > Thanks > > Mike > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From golharam at umdnj.edu Fri Feb 11 14:31:01 2005 From: golharam at umdnj.edu (Ryan Golhar) Date: Fri Feb 11 14:25:10 2005 Subject: [Bioperl-l] SeqIO bug? Message-ID: <007501c51070$38d34a80$cd028a0a@GOLHARMOBILE1> I have a bunch of cDNA sequences that I'm trying to process. The sequences are in FASTA format, but they are all missing the FASTA header ie that just contain the sequence. As a test to make sure I'm reading them in correctly, I doing the following: my $seq_in = Bio::SeqIO->new(-file => " 'fasta'); my $seq = $seq_in->next_seq(); print $seq->length; It prints out a number, but reads the first line as the FASTA header even though its not there. Wouldn't it make more sense to either print out an error message about the missing FASTA header, or read in the file as just the sequence regardless of specifying the FASTA format? If I try to read the sequence in as "raw", the length is always printed out as 70... Ryan From brian_osborne at cognia.com Fri Feb 11 15:28:50 2005 From: brian_osborne at cognia.com (Brian Osborne) Date: Fri Feb 11 15:24:58 2005 Subject: [Bioperl-l] Another small bump In-Reply-To: Message-ID: Mike, It's in the biosql package, not the bioperl-db package. Go to: http://obda.open-bio.org/ or http://cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/biosql-schema/sql/?cvsro ot=biosql Brian O. -----Original Message----- From: bioperl-l-bounces@portal.open-bio.org [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Mike Muratet Sent: Friday, February 11, 2005 1:59 PM To: Brian Osborne Cc: Hilmar Lapp; bioperl-l@bioperl.org Subject: RE: [Bioperl-l] Another small bump On Fri, 11 Feb 2005, Brian Osborne wrote: > Mike, > > Ah. Error in the bioperl-db document, that should be > "scripts/load_ncbi_taxonomy.pl". > > Brian O. > > Brian I just checked the directory (again) where I unpacked the tarball--I don't see it. What was in the tarball: In /usr/local/lib/perl5/site_perl/5.8.0/bioperl-db/scripts/biosql bioentry2flat.pl cgi-bin clean_ontology.pl del-assocs-sql.pl drop_mysql_biosql_test_dbs freshen-annot.pl load_interpro.pl load_ontology.pl load_seqdatabase.pl merge-unique-ann.pl terms update-on-new-date.pl update-on-new-version.pl It's not in the subdirectories. I recall seeing it last time I built a database on another machine (which has been awhile). I haven't had any problems loading sequences, but it would be a handy table to have. Thanks Mike > -----Original Message----- > From: bioperl-l-bounces@portal.open-bio.org > [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Mike Muratet > Sent: Friday, February 11, 2005 10:21 AM > To: Hilmar Lapp > Cc: bioperl-l@bioperl.org > Subject: [Bioperl-l] Another small bump > > > Hilmar > > The bioperl-db installation notes speaks of load_taxonomy.pl in the biosql > distribution. I got the CVS tarball and there doesn't appear to be any > perl in it at all. I see in the archives that there was some discussion > about where it should live. Where does it live? > > Maybe there should be a 'beers for the developers' session in Detroit this > summer.... > > Thanks > > Mike > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > _______________________________________________ Bioperl-l mailing list Bioperl-l@portal.open-bio.org http://portal.open-bio.org/mailman/listinfo/bioperl-l From msameet at gmail.com Fri Feb 11 02:41:16 2005 From: msameet at gmail.com (Sameet) Date: Fri Feb 11 15:51:13 2005 Subject: [Bioperl-l] help for parsing MAST output Message-ID: <200502111311.16936.sameet@nccs.res.in> Dear all, let me thank you in advance for such a nice discussion group. Though i have not posted anything to the group, the discussions have been very helpful to me. I need some help with the parsing of MAST output, because i want to find the start site of the match for certain motifs that i produced earlier using MEME. Is there a way to do it. I read the documentation at http://search.cpan.org/~birney/bioperl-1.4/Bio/Matrix/PSM/IO.pm, however it was a bit confusing, because i havent used perl in a long time. thanks Sameet -- __________________________________________________ Sameet Mehta, Senior Research Fellow (CSIR) Lab 3, National Centre for Cell Science, Pune 411007 Phone: +91 20 25690922 ext 210, 209 Fax: +91 20 25692259 From pierre_rioux at yahoo.com Thu Feb 10 18:28:03 2005 From: pierre_rioux at yahoo.com (Pierre Rioux) Date: Fri Feb 11 15:51:19 2005 Subject: [Bioperl-l] ASN.1 and BioPerl ? Message-ID: <20050210232803.38067.qmail@web53005.mail.yahoo.com> Hello BioPerl users and coders, I haven't seen much (or any) support for parsing ASN.1 documents in BioPerl; I assume it's either because the community doesn't need it much, or there are already some Perl ASN.1 libraries available elsewhere (but I've not looked very hard, I have to admit). There's some code I could contribute about that, but before I do anything I'd like to know what other developers think. The code I have is basically a pure Perl text parser that can read ASN.1 text (in .prt format, like NCBI publishes) and builds a data structure (a hierarchy of hash tables) to represent it. The object model is quite primitive right now, but eventually it could be extended into a nice API. My questions are: 1) Would this be useful to anyone? 2) If so, where (roughly) in the BioPerl code tree would such a thing go? 3) Any other comments or recommendations welcome. I am using this library in my applications to read the file 'gc.prt' as published regularly by NCBI; this file describes a set of genetic codes, and NCBI updates it from time to time. In BioPerl, I noticed that the same information is hardcoded in the class Bio::Tootls::CodonTable, which means that whenever NCBI updates the gc.prt file the bioperl class also needs to be modified. An alternative I suggest is that if gc.prt can be found on the local system (using the NCBI environment variable) then Bio::Tootls::CodonTable could read it and keep up to date automatically (otherwise, it could keep using the hardcoded codon tables it currently has). I am sure other parts of BioPerl could probably benefit a little from being able to read NCBI's ASN.1 data files, unless there's some kind of philosophical opposition to the idea? I'm willing to do all the work, AND design a proper and clean OO interface for the code, provided the answer to question #1 above is 'yes'... Pierre Rioux pierre_rioux {round symbol} yahoo {smallest char} com __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From skirov at utk.edu Fri Feb 11 16:20:26 2005 From: skirov at utk.edu (Stefan Kirov) Date: Fri Feb 11 16:18:11 2005 Subject: [Bioperl-l] help for parsing MAST output In-Reply-To: <200502111311.16936.sameet@nccs.res.in> References: <200502111311.16936.sameet@nccs.res.in> Message-ID: <420D219A.8050909@utk.edu> Samet, I am confused. Are you trying to parse MAST or MEME output? Something like this should work for you: use Bio::Matrix::PSM::IO; my $psmIO= new Bio::Matrix::PSM::IO(-file=>$file, -format=>'meme'); while (my $psm=$psmIO->next_psm) { my $instances=$psm->instances; foreach my $instance (@{$instances}) { print $instance->primary_id," is found at position ",$instance->start,"\n"; } } Stefan Sameet wrote: >Dear all, >let me thank you in advance for such a nice discussion group. Though i have >not posted anything to the group, the discussions have been very helpful to >me. I need some help with the parsing of MAST output, because i want to find >the start site of the match for certain motifs that i produced earlier using >MEME. Is there a way to do it. I read the documentation at >http://search.cpan.org/~birney/bioperl-1.4/Bio/Matrix/PSM/IO.pm, however it >was a bit confusing, because i havent used perl in a long time. > >thanks >Sameet > > From cjm at fruitfly.org Fri Feb 11 16:24:32 2005 From: cjm at fruitfly.org (Chris Mungall) Date: Fri Feb 11 16:20:15 2005 Subject: [Bioperl-l] ASN.1 and BioPerl ? In-Reply-To: <20050210232803.38067.qmail@web53005.mail.yahoo.com> References: <20050210232803.38067.qmail@web53005.mail.yahoo.com> Message-ID: Hi Pierre If this is a generic ASN.1 parser then my opinion is that the appropriate place for this is as an independent module on CPAN. The people can wrap this with bio-specific parsers in the appropriate Bio::*IO namespace. I would choose your namespace in such a way that you do not preclude other ASN parsers - propose this on the perl module-authors mail list first. Have you see this? http://search.cpan.org/~gbarr/Convert-ASN1-0.18/ It seems that this is quite similar to yours, although it has some 'excess' functionality I think returning nested hashes is preferable to objects for the bare-bones ASN.1 parser. For large files a push/pull architecture would be preferable; or some kind of indexing scheme. One approach would be to leverage all the existing CPAN technology for this by providing a ASN.1->XML mapping - I imagine this can be done generically. Perhaps NCBI even have such a tool? I think the codon tables idea is a good one. I don't think there's any philosophical opposition - a generic format such as ASN.1 is preferable to a multitude of ad-hocs formats. However, it would be nice if NCBI were to provide all their datasets as XML, which would make an ASN.1 parser fairly pointless for those outside the NCBI. Until that time, I for one would have uses for a generic ASN.1 parser. Cheers Chris On Thu, 10 Feb 2005, Pierre Rioux wrote: > Hello BioPerl users and coders, > > I haven't seen much (or any) support for parsing ASN.1 > documents in BioPerl; I assume it's either because the > community doesn't need it much, or there are already some > Perl ASN.1 libraries available elsewhere (but I've not > looked very hard, I have to admit). There's some code I > could contribute about that, but before I do anything > I'd like to know what other developers think. The > code I have is basically a pure Perl text parser that > can read ASN.1 text (in .prt format, like NCBI publishes) > and builds a data structure (a hierarchy of hash tables) > to represent it. The object model is quite primitive right > now, but eventually it could be extended into a nice API. > My questions are: > > 1) Would this be useful to anyone? > 2) If so, where (roughly) in the BioPerl code > tree would such a thing go? > 3) Any other comments or recommendations welcome. > > I am using this library in my applications to read the file > 'gc.prt' as published regularly by NCBI; this file describes > a set of genetic codes, and NCBI updates it from time to time. > In BioPerl, I noticed that the same information is hardcoded > in the class Bio::Tootls::CodonTable, which means that whenever > NCBI updates the gc.prt file the bioperl class also needs > to be modified. An alternative I suggest is that if gc.prt > can be found on the local system (using the NCBI environment > variable) then Bio::Tootls::CodonTable could read it and keep up > to date automatically (otherwise, it could keep using the > hardcoded codon tables it currently has). > > I am sure other parts of BioPerl could probably benefit > a little from being able to read NCBI's ASN.1 data files, > unless there's some kind of philosophical opposition to > the idea? > > I'm willing to do all the work, AND design a proper and > clean OO interface for the code, provided the answer to > question #1 above is 'yes'... > > Pierre Rioux > > pierre_rioux {round symbol} yahoo {smallest char} com > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > From skirov at utk.edu Fri Feb 11 16:30:05 2005 From: skirov at utk.edu (Stefan Kirov) Date: Fri Feb 11 16:25:51 2005 Subject: [Bioperl-l] help for parsing MAST output Message-ID: <420D23DD.2030908@utk.edu> Samet, I am confused. Are you trying to parse MAST or MEME output? Something like this should work for you: use Bio::Matrix::PSM::IO; my $psmIO= new Bio::Matrix::PSM::IO(-file=>$file, -format=>'meme'); while (my $psm=$psmIO->next_psm) { my $instances=$psm->instances; foreach my $instance (@{$instances}) { print $instance->primary_id," is found at position ",$instance->start,"\n"; } } Stefan Sameet wrote: >Dear all, >let me thank you in advance for such a nice discussion group. Though i have >not posted anything to the group, the discussions have been very helpful to >me. I need some help with the parsing of MAST output, because i want to find >the start site of the match for certain motifs that i produced earlier using >MEME. Is there a way to do it. I read the documentation at >http://search.cpan.org/~birney/bioperl-1.4/Bio/Matrix/PSM/IO.pm, however it >was a bit confusing, because i havent used perl in a long time. > >thanks >Sameet > > From tan10 at psu.edu Fri Feb 11 16:55:39 2005 From: tan10 at psu.edu (Todd Naumann) Date: Fri Feb 11 16:50:42 2005 Subject: [Bioperl-l] Re: Bioperl-l Digest, Vol 22, Issue 8 In-Reply-To: <200502112026.j1BKQUKr031109@portal.open-bio.org> References: <200502112026.j1BKQUKr031109@portal.open-bio.org> Message-ID: Ryan, I can't help you as to the logic of behavior when incorrect fasta files are specified as fasta. I'm sure there are many ways that it could be handled and the best one depends on your application. Your attempt to use raw format failed because your files have newlines which are not allowed. If you replace: my $seq = $seq_in->next_seq(); print $seq->length; with a loop: while (my $inseq = $seq_in->next_seq) { print $inseq->length, "\n"; } you will see that each line is treated as a seperate sequence. If all you want is the total length of your file, you could add a counter like: my $counter; while (my $inseq = $seq_in->next_seq) { $counter += $inseq->length; } print $counter, "\n"; should give you the correct length of the sequence. If you want to use bioperl Sequence object for other functionality you can 1) add a headers to the files 2) use perl to convert your files so they don't have newlines 3) open file with 'normal' perl, save the sequence as a string and manually construct a Bio::PrimarySeq object: #!/usr/bin/perl use Bio::PrimarySeq; my $usage = "perl bioperl.pl infile"; my $infile = shift or die $usage; open(IN, $infile) or die $usage; my $sequence; while (){ chomp; $sequence .= $_ } my $seq = Bio::PrimarySeq -> new(-seq => $sequence, -id => $infile ); print $seq->length, "\n"; exit; -Todd Todd Naumann Post-Doc, Stephen Benkovic lab Dept. of Chemistry Penn State University University Park, PA 16802 > > Message: 16 > Date: Fri, 11 Feb 2005 14:31:01 -0500 > From: "Ryan Golhar" > Subject: [Bioperl-l] SeqIO bug? > To: "'Bioperl List'" > Message-ID: <007501c51070$38d34a80$cd028a0a@GOLHARMOBILE1> > Content-Type: text/plain; charset="US-ASCII" > > I have a bunch of cDNA sequences that I'm trying to process. The > sequences are in FASTA format, but they are all missing the FASTA > header > ie that just contain the sequence. As a test to make sure I'm reading > them in correctly, I doing the following: > > my $seq_in = Bio::SeqIO->new(-file => " -format => 'fasta'); > my $seq = $seq_in->next_seq(); > print $seq->length; > > It prints out a number, but reads the first line as the FASTA header > even though its not there. Wouldn't it make more sense to either print > out an error message about the missing FASTA header, or read in the > file > as just the sequence regardless of specifying the FASTA format? > > If I try to read the sequence in as "raw", the length is always printed > out as 70... > > Ryan > > > From Marc.Logghe at devgen.com Fri Feb 11 20:10:35 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Fri Feb 11 20:07:26 2005 Subject: [Bioperl-l] RE: [Gmod-gbrowse] features not displaying Message-ID: Hi all > Can you take the responsibility for keeping the "horrible hack" > section of the bugfixes branch up to date in CVS? I don't want to > start colliding with you. Done. I also found the cause of the double feature tracks. The code warned for the problem, and it even said how to fix it ! # WARNING: if too many features start showing up in tracks, uncomment # the following line and comment the one after that. # @label = $self->type2label($basetype,$length) unless @label; push @label,$self->type2label($basetype,$length); And that is just what I did ;-) It was commited to the release_1_62-bugfixes branch. Lincoln, could you please have a look at this piece in Bio::Graphics::Browser, I don't know what the purpose was. So, after all that, gbrowse (release_1_62-bugfixes) on top of biosql should work straight out of the box (at least with bioperl 1.5.0 !) Cheers, Marc From heikki at nildram.co.uk Sat Feb 12 07:38:39 2005 From: heikki at nildram.co.uk (Heikki Lehvaslaiho) Date: Sat Feb 12 07:34:32 2005 Subject: [Bioperl-l] SeqIO bug? In-Reply-To: <007501c51070$38d34a80$cd028a0a@GOLHARMOBILE1> References: <007501c51070$38d34a80$cd028a0a@GOLHARMOBILE1> Message-ID: <200502121238.39708.heikki@nildram.co.uk> Ryan, Most of our parsers assume that if you state the format the sequences really are in that format. There is some built in guessing in SeqIO: if you do not specify the format, the code will look into the sequence file. If the file does not follow any well defined formats, it is very difficult to guess what it could be... As for your raw output: raw assumes that there is one sequence per line. In you case that seems to be the number of characters in one line. I suggest that you first convert your sequences into fasta with a simple script. You do not say what is the limiting character or characters between sequences, nor if you have names for them, so I can not write the script for you, but you can use the following code as a basis: #---------------------------- #!/usr/bin/env perl -w use strict; my $delimiter = "xx\n"; $/=$delimiter; my $count; while (<>) { $count++; s/$delimiter//; s/\W//g; s/\d//g; print ">$count\n$_\n"; } #---------------------------- It assumes files like this as input: ----------------------------------------------- ag cagc xx 1 catgctagctacgtatgc 2 cgtcagctagctga 3 catcgtagc xx ttt tgtt ttatt atatat xx ----------------------------------------------- I hope this helps, -Heikki On Friday 11 February 2005 19:31, Ryan Golhar wrote: > I have a bunch of cDNA sequences that I'm trying to process. The > sequences are in FASTA format, but they are all missing the FASTA header > ie that just contain the sequence. As a test to make sure I'm reading > them in correctly, I doing the following: > > my $seq_in = Bio::SeqIO->new(-file => " -format => 'fasta'); > my $seq = $seq_in->next_seq(); > print $seq->length; > > It prints out a number, but reads the first line as the FASTA header > even though its not there. Wouldn't it make more sense to either print > out an error message about the missing FASTA header, or read in the file > as just the sequence regardless of specifying the FASTA format? > > If I try to read the sequence in as "raw", the length is always printed > out as 70... > > Ryan > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l -- ______ _/ _/_____________________________________________________ _/ _/ http://www.ebi.ac.uk/mutations/ _/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute _/ _/ _/ Wellcome Trust Genome Campus, Hinxton _/ _/ _/ Cambridge, CB10 1SD, United Kingdom _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 ___ _/_/_/_/_/________________________________________________________ From hlapp at gmx.net Sat Feb 12 15:53:25 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Sat Feb 12 15:48:56 2005 Subject: [Bioperl-l] Another small bump In-Reply-To: Message-ID: <23C8B654-7D38-11D9-AEE6-000A959EB4C4@gmx.net> Correct. It comes with biosql, not bioperl-db. The reason is that although it's in perl it doesn't use bioperl - so as long as you have perl installed and your DBD driver you can use it regardless of whether you're home in biojava, biophython, bioruby, or bioperl. -hilmar On Friday, February 11, 2005, at 12:28 PM, Brian Osborne wrote: > Mike, > > It's in the biosql package, not the bioperl-db package. Go to: > > http://obda.open-bio.org/ > > or > > http://cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/biosql-schema/sql/ > ?cvsro > ot=biosql > > > Brian O. > > -----Original Message----- > From: bioperl-l-bounces@portal.open-bio.org > [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Mike Muratet > Sent: Friday, February 11, 2005 1:59 PM > To: Brian Osborne > Cc: Hilmar Lapp; bioperl-l@bioperl.org > Subject: RE: [Bioperl-l] Another small bump > > > > > On Fri, 11 Feb 2005, Brian Osborne wrote: > >> Mike, >> >> Ah. Error in the bioperl-db document, that should be >> "scripts/load_ncbi_taxonomy.pl". >> >> Brian O. >> >> > > Brian > > I just checked the directory (again) where I unpacked the tarball--I > don't > see it. What was in the tarball: > > In /usr/local/lib/perl5/site_perl/5.8.0/bioperl-db/scripts/biosql > > bioentry2flat.pl > cgi-bin > clean_ontology.pl > del-assocs-sql.pl > drop_mysql_biosql_test_dbs > freshen-annot.pl > load_interpro.pl > load_ontology.pl > load_seqdatabase.pl > merge-unique-ann.pl > terms > update-on-new-date.pl > update-on-new-version.pl > > It's not in the subdirectories. > > I recall seeing it last time I built a database on another machine > (which > has been awhile). > > I haven't had any problems loading sequences, but it would be a handy > table to have. > > Thanks > > Mike > >> -----Original Message----- >> From: bioperl-l-bounces@portal.open-bio.org >> [mailto:bioperl-l-bounces@portal.open-bio.org]On Behalf Of Mike >> Muratet >> Sent: Friday, February 11, 2005 10:21 AM >> To: Hilmar Lapp >> Cc: bioperl-l@bioperl.org >> Subject: [Bioperl-l] Another small bump >> >> >> Hilmar >> >> The bioperl-db installation notes speaks of load_taxonomy.pl in the >> biosql >> distribution. I got the CVS tarball and there doesn't appear to be any >> perl in it at all. I see in the archives that there was some >> discussion >> about where it should live. Where does it live? >> >> Maybe there should be a 'beers for the developers' session in Detroit >> this >> summer.... >> >> Thanks >> >> Mike >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From hlapp at gmx.net Sat Feb 12 16:20:30 2005 From: hlapp at gmx.net (Hilmar Lapp) Date: Sat Feb 12 16:16:58 2005 Subject: [Bioperl-l] ASN.1 and BioPerl ? In-Reply-To: <20050210232803.38067.qmail@web53005.mail.yahoo.com> Message-ID: The ASN.1 parser would be very useful, in particular for implementing the NCBI Gene parser I suppose. I do suggest though that you publish this as a separate module on CPAN, as supposedly it is (or meant to be?) generically useful, so I completely agree with Chris on this. In the bioinf world, ASN.1 is really only used by NCBI, but for them it's their bread and butter. I concur with Chris that it would be most useful and preferred if NCBI just exported their data to XML format to make everyone's life a bit easier, and in fact they have done so on certain occasions in the more recent past. For instance, they have a tool to download that's statically linked against the NCBI toolkit and that will convert a sequence record in ASN.1 to XML format. You can also find claims in their documentation that they can translate every ASN.1 definition in their data model into XML. In practice this doesn't appear quite so easy, or otherwise I don't understand why there is still neither an XML download nor a similar ASN.1->XML converter for NCBI Gene, despite the former having been promised in the transition FAQs since several months (NCBI Gene is replacing NCBI LocusLink). I need an NCBI Gene parser implemented in the Bio::SeqIO framework returning compatible Bio::SeqI objects within the next few weeks. The speed needs to be at least several records per second, ideally 10/s or higher. My understanding is that Peter has a grammar-based parser in Java (speed I don't know), and Steve has a Parse::RecDescent-based parser in perl (not bioperl) which is (expectedly) slow. I've seen Graham Barr's module on CPAN but haven't tried it yet; it seemed to me that you need the ASN model definition to start with, which I haven't seen at any obvious or not-so-obvious place on the NCBI ftp site, so I either missed something or you have to download the entire toolkit or something else. How does your library compare to Graham's? Would you be willing to send me the code? -hilmar On Thursday, February 10, 2005, at 03:28 PM, Pierre Rioux wrote: > Hello BioPerl users and coders, > > I haven't seen much (or any) support for parsing ASN.1 > documents in BioPerl; I assume it's either because the > community doesn't need it much, or there are already some > Perl ASN.1 libraries available elsewhere (but I've not > looked very hard, I have to admit). There's some code I > could contribute about that, but before I do anything > I'd like to know what other developers think. The > code I have is basically a pure Perl text parser that > can read ASN.1 text (in .prt format, like NCBI publishes) > and builds a data structure (a hierarchy of hash tables) > to represent it. The object model is quite primitive right > now, but eventually it could be extended into a nice API. > My questions are: > > 1) Would this be useful to anyone? > 2) If so, where (roughly) in the BioPerl code > tree would such a thing go? > 3) Any other comments or recommendations welcome. > > I am using this library in my applications to read the file > 'gc.prt' as published regularly by NCBI; this file describes > a set of genetic codes, and NCBI updates it from time to time. > In BioPerl, I noticed that the same information is hardcoded > in the class Bio::Tootls::CodonTable, which means that whenever > NCBI updates the gc.prt file the bioperl class also needs > to be modified. An alternative I suggest is that if gc.prt > can be found on the local system (using the NCBI environment > variable) then Bio::Tootls::CodonTable could read it and keep up > to date automatically (otherwise, it could keep using the > hardcoded codon tables it currently has). > > I am sure other parts of BioPerl could probably benefit > a little from being able to read NCBI's ASN.1 data files, > unless there's some kind of philosophical opposition to > the idea? > > I'm willing to do all the work, AND design a proper and > clean OO interface for the code, provided the answer to > question #1 above is 'yes'... > > Pierre Rioux > > pierre_rioux {round symbol} yahoo {smallest char} com > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l > > -- ------------------------------------------------------------- Hilmar Lapp email: lapp at gnf.org GNF, San Diego, Ca. 92121 phone: +1-858-812-1757 ------------------------------------------------------------- From Peter.Robinson at t-online.de Sat Feb 12 16:37:56 2005 From: Peter.Robinson at t-online.de (Peter.Robinson@t-online.de) Date: Sat Feb 12 16:32:10 2005 Subject: [Bioperl-l] ASN.1 and BioPerl ? In-Reply-To: References: <20050210232803.38067.qmail@web53005.mail.yahoo.com> Message-ID: <20050212213756.GA4601@anna> On Sat, Feb 12, 2005 at 01:20:30PM -0800, Hilmar Lapp wrote: > The ASN.1 parser would be very useful, in particular for implementing > the NCBI Gene parser I suppose. > > I do suggest though that you publish this as a separate module on CPAN, > as supposedly it is (or meant to be?) generically useful, so I > completely agree with Chris on this. I also agree that it would be better to have the module on CPAN; if you been inspired to use the module to incorporate Entrez Gene into BioPerl I would be happy to help out as I can. My initial experiences with this suggest it will not be easy. > > I need an NCBI Gene parser implemented in the Bio::SeqIO framework > returning compatible Bio::SeqI objects within the next few weeks. The > speed needs to be at least several records per second, ideally 10/s or > higher. > > My understanding is that Peter has a grammar-based parser in Java > (speed I don't know), and Steve has a Parse::RecDescent-based parser in > perl (not bioperl) which is (expectedly) slow. > > I've seen Graham Barr's module on CPAN but haven't tried it yet; it > seemed to me that you need the ASN model definition to start with, > which I haven't seen at any obvious or not-so-obvious place on the NCBI > ftp site, so I either missed something or you have to download the > entire toolkit or something else. You might want to take a look at this http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn note that there appear to be some inconsistencies between some Entrez Gene records and this specification (or I have misunderstood something). After having played around with perl, bioperl, lec/yacc and more recently antlr, I have the impression that this is a doable task using antlr and a modest amount of Java code. (Doable meaning it is possible to extract the information one wants from a species-specific ASN.1 Gene file). Given my schedule I don't know when I will be able to finish this, but I will send the list a mail presuming there is no bioperl tool to do this by then. -Peter From Marc.Logghe at devgen.com Sat Feb 12 18:37:59 2005 From: Marc.Logghe at devgen.com (Marc Logghe) Date: Sat Feb 12 18:35:07 2005 Subject: [Bioperl-l] ASN.1 and BioPerl ? Message-ID: > In the bioinf world, ASN.1 is really only used by NCBI, but for them > it's their bread and butter. I concur with Chris that it > would be most > useful and preferred if NCBI just exported their data to XML > format to > make everyone's life a bit easier, and in fact they have done so on > certain occasions in the more recent past. Hi folks, just chiming in, so I might missing the point here (please ignore if that is the case). I only wanted to say that NCBI actually does provide sequence data in XML format. Genbank records can be dumped in GBSeq XML and INSDSeq XML. All dtd can be found at http://www.ncbi.nlm.nih.gov/dtd/ Cheers, Marc From peter.robinson at charite.de Mon Feb 14 05:30:16 2005 From: peter.robinson at charite.de (Robinson, Peter) Date: Mon Feb 14 05:27:25 2005 Subject: WG: [Bioperl-l] dssp script Message-ID: <5F7CE35370B6CF429AA3CA960ECC2780017C9680@EXCHANGE2.charite.de> Thanks Ed, the iterator seems to work perfectly. The module is quite useful for me. It may be that I am doing something wrong, but it seems as if there may be one remaining bug. If you look at line 1206 $key_num = $arg_str; For some files it seems as if $key_num gets assigned a string such as "110:" rather than the integer 110. This messes us line 1215 if ($key_num == $self->{'Res'}->[$i]-{'pdb_resnum'}) I added $key_num =~ s/://; after line 1206, which fixed the problem. Thanks again, peter Peter N. Robinson, M.D. Institute of Medical Genetics Charit? University Hospital Augustenburger Platz 1 13353 Berlin Germany ++49-30-450 569124 peter.robinson@charite.de http://www.charite.de/ch/medgen/robinson The best editor for MS Word documents: /dev/null -----Urspr?ngliche Nachricht----- Von: Ed Green [mailto:ed@compbio.berkeley.edu] Gesendet: Dienstag, 1. Februar 2005 00:08 An: ed@compbio.berkeley.edu Cc: Robinson, Peter; bioperl-l@portal.open-bio.org Betreff: Re: [Bioperl-l] dssp script Peter- Just checked in these fixes to Bio::Structure::SecStr::DSSP:Res.pm You may find the new residues() interator method useful. Regards, Ed Green Ed Green wrote: > Dear Peter, > > These two are in fact bugs that I will fix. The first results because of > the presence of 'termination residues' that don't have residue numbers. > Their residue numbers, then, can't be compared numerically. Fortunately, > this bug won't result in wrong results as we want this comparison to > always be false anyway. The solution to this is to first check if either > of the termination residue signals are set and if so, don't do this > numerical comparison. > > The second, blank line(s) at end of file will also be fixed. > > Beware that there is, I think, a bug in your script. It appears that you > are attempting to iterate over all residues. However, iterating A:1 .. > A:max doesn't get it done because of the crazy way residues can be > numbered in PDB files: you'll miss all the residues with altloc codes > (A:27A, A:27B, A:27C, e.g.). > > To make this easy an iterator is called for. It will just return all > 'real' residues for the pdb file or for a specified chain - I'll try to > get that done this weekend. > > Regards, > Ed Green > > Robinson, Peter wrote: > >> Dear BioPerlers, >> >> I am writing a script to use the BioPerl DSSP module to print out a >> list of phi and psi angles for all applicable residues of all chains. >> Although the results are correct, I get the following error message at >> the end of each chain: >> >> Argument "" isn't numeric in numeric eq (==) at >> /usr/local/share/perl/5.8.4/Bio/Structure/SecStr/DSSP/Res.pm line 1168. >> >> and I am not quite sure where it is coming from. Perhaps I am using >> the wrong part of the API, but I am trying to get a list of all >> residues for each chain as follows: >> >> foreach my $ch (@chains) { >> my $ss_elements_pts = $dssp->secBounds($ch); >> print "Chain $ch:\n"; >> my $pos = 0; >> my $max = 0; >> foreach my $stretch (@{$ss_elements_pts}) { >> my $start = $stretch->[0]; >> my $end = $stretch->[1]; if ($end =~ m/(\d+)/) { $end = $1; } >> if ($end > $max) { $max = $end; } >> } >> ## END is now the last residue in this chain >> for my $res (1..$max) { >> my $residueID = $res . ":" . $ch; >> my ($phi,$psi,$SS,$SSsum,$AA); >> eval { $phi = $dssp->resPhi($residueID);}; >> etc. >> >> The full script is appended to the bottom of this mail. >> >> >> I also noticed what might be a minor bug in the module DSSP/Res.pm; >> when I use dsspcmbi to analyze a PDB file, it produces a results file >> with an empty last line. This causes a crash: >> >> Use of uninitialized value in chomp at >> /usr/local/share/perl/5.8.4/Bio/Structure/SecStr/DSSP/Res.pm line >> 1284, line 955. >> >> >> If I manually remove this last empty line, there was no error. By >> adding the following line at Res.pm l.1284, you can fix the problem: >> >> >> while ( chomp( $cur = <$file> ) ) { >> next if ($cur =~ m/^\s*$/); >> ********************************************* >> $res_num = substr( $cur, 0, 5 ); >> $res_num =~ s/\s//g; >> $self->{ 'Res' }->[ $res_num ] = &_parseResLine( $cur ); >> } >> } >> >> >> >> >> Thanks in adavance for any tips! Peter >> Peter N. Robinson, M.D. >> Institute of Medical Genetics >> Charit? University Hospital >> Augustenburger Platz 1 >> 13353 Berlin >> Germany >> ++49-30-450 569124 >> peter.robinson@charite.de >> http://www.charite.de/ch/medgen/robinson >> Beware of bugs in the above code; I have only proved it correct, not >> tried it. -Donald Knuth, computer scientist (1938- ) >> >> ######################## >> >> #!/usr/bin/perl -w >> use IO::File; >> use Bio::Structure::SecStr::DSSP::Res; >> use Data::Dumper; >> >> >> =pod >> parseDSSP.pl >> Script to parse the output of DSSP using the BioPerl module >> Bio::Structure::SecStr::DSSP::Res. To use it, process a PDB >> file with dssp or dsspcmbi, and pass the resulting file to this >> script. For more information on dssp and BioPerl see the >> module documentation at http://bioperl.org >> >> @email peter.robinson@charite.de >> 21 January, 2005 >> >> =cut >> >> >> >> my $file = "pdb43ca.dssp"; >> my $dssp = new Bio::Structure::SecStr::DSSP::Res('-file'=> "$file"); >> >> my $pdbID = $dssp->pdbID(); >> my $auth = $dssp->pdbAuthor(); >> my $cmpd = $dssp->pdbCompound(); >> my $pdb_date = $dssp->pdbDate(); >> my $header = $dssp->pdbHeader(); >> my $pdbSource = $dssp->pdbSource(); >> >> print "PDB entry $pdbID \n\tauthor:\t$auth", >> "\n\tCompound:\t$cmpd", >> "\n\tDate:\t$pdb_date", >> "\n\tHeader:\t$header", >> "\n\tsource:\t$pdbSource\n\n"; >> >> my $totalRes = $dssp->numResidues(); >> print "Total residue count (all chains):$totalRes\n"; >> >> >> my $surArea= $dssp->totSurfArea(); >> print "Total accessible surface area:\t$surArea (square Ang)\n"; >> >> >> my $chainRef = $dssp->chains(); >> my @chains = sort @{$chainRef}; >> print "Chain[s]:\n"; >> foreach my $ch (@chains) { >> print "\t$ch"; >> } >> print "\n"; >> >> my $hb = $dssp->hBonds(); >> print "H BONDS.\n"; >> print "TYPE O(I)-->H-N(J): $hb->[0]\n", >> "IN PARALLEL BRIDGES: $hb->[1]\n", >> "IN ANTIPARALLEL BRIDGES $hb->[2]\n", >> "TYPE O(I)-->H-N(I-5) $hb->[3]\n", >> "TYPE O(I)-->H-N(I-4) $hb->[4]\n", >> "TYPE O(I)-->H-N(I-3) $hb->[5]\n", >> "TYPE O(I)-->H-N(I-2) $hb->[6]\n", >> "TYPE O(I)-->H-N(I-1) $hb->[7]\n", >> "TYPE O(I)-->H-N(I+0) $hb->[8]\n", >> "TYPE O(I)-->H-N(I+1) $hb->[9]\n", >> "TYPE O(I)-->H-N(I+2) $hb->[10]\n", >> "TYPE O(I)-->H-N(I+3) $hb->[11]\n", >> "TYPE O(I)-->H-N(I+4) $hb->[12]\n", >> "TYPE O(I)-->H-N(I+5) $hb->[13]\n", >> "\n"; >> >> >> foreach my $ch (@chains) { >> my $ss_elements_pts = $dssp->secBounds($ch); >> print "Chain $ch:\n"; >> my $pos = 0; >> my $max = 0; >> foreach my $stretch (@{$ss_elements_pts}) { >> my $start = $stretch->[0]; >> my $end = $stretch->[1]; if ($end =~ m/(\d+)/) { $end = $1; } >> if ($end > $max) { $max = $end; } >> } >> ## END is now the last residue in this chain >> for my $res (1..$max) { >> my $residueID = $res . ":" . $ch; >> my ($phi,$psi,$SS,$SSsum,$AA); >> eval { $phi = $dssp->resPhi($residueID);}; >> eval { $psi = $dssp->resPsi($residueID);}; >> eval { $SS = $dssp->resSecStr($residueID);}; >> eval { $SSsum = $dssp->resSecStrSum($residueID);}; >> $AA = $dssp->resAA($residueID); >> $phi = $phi || "n/a"; >> $psi = $psi || "n/a"; >> $SS = $SS || "-"; >> my $SSclass; >> if ($SSsum eq "H") { $SSclass = "helix"; } >> elsif ($SSsum eq "T") { $SSclass = "turn"; } >> elsif ($SSsum eq "B") { $SSclass = "beta"; } >> else { $SSclass = $SSsum; } >> print "$residueID) [$AA] phi:$phi psi:$psi SecStruct: $SS >> ($SSclass) \n"; >> } >> } >> >> >> >> >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l@portal.open-bio.org >> http://portal.open-bio.org/mailman/listinfo/bioperl-l > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@portal.open-bio.org > http://portal.open-bio.org/mailman/listinfo/bioperl-l From ewijaya at singnet.com.sg Sun Feb 13 19:14:01 2005 From: ewijaya at singnet.com.sg (Edward WIJAYA) Date: Mon Feb 14 08:37:09 2005 Subject: [Bioperl-l] What format is this? Supported with BioSeq::IO? Message-ID: Hi, I am new to BioPerl. I would like to know what format is this file (also attached)? ___BEGIN__ 299 MMMTCP1G.1 CAT Z35294 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. Mus musculus CCTCGGCTCGGGATGCCCCTTGGTTCGTCCTAGGCTCA ............iMMMMMMMMMMMMMMMMMMMMMMMMM __END__ Is it supported with BioSeq::IO? Basically what I am trying to do is to write a Transcription Initiation StartSite recognition program with Perl given the file. Thanks and hope to hear from you again. -- Regards, Edward WIJAYA Singapore -------------- next part -------------- 206 BBCALCB.1 CAT X71666 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCGTCAGAGCGCCGACACTCTTCTCTGTGCGAGCGAGCCGCCGACCGCCAAGCAAAATGGGAAATGAGGCAAGTTATCCTTTGGAAATGTGCTCACACTTTGATGCAGATGAAATTAAAAGGCTAGGAAAGAGATTTAAGAAGCTCGATTTGGACAATTCTGGTTCTTTGAGTGTGGAAGAGTTCATGTCTCTACCTGAGTTACAA ........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252 BDALDOXID.1 CAT X87251 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAGAGTGGTTGCACTTTAGGCTCCTTCGACCCCTTCTGCGTGTCGGGGCCCCGGTGCCGGCGACTCCTCCTGGGGACCTTCGGACCCTCGGACCCCACCACCATGGAAGGGGGCTCCGAGCTGCTCTTCTACGTGAACGGCCGCAAGGTGACAGAAAAAAATGTTGATCCTGAAACAATGCTATTGCCATATCTGAGGAAAAAGCTCCGACTCACAGGAACTAAATATGGCTGTGGAGGGGGAGGCTGTGGT ......................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 BOV39KD.1 CAT J04204 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGTGCTGCGTGCCGGCCGGTCCGGGCCCTCCGGTCCAGCCGCCCCGCCGCAGCCATGTCGTTCTTCCCGGAGCTTTACTTCAACGTGGACAATGGCTACTTGGAGGGACTGGTGCGCGGCCTGAAGGCTGGGGTGCTCAGCCAGGCGGACTACCTCAACCTGGTGCAGTGCGAGACGCTCGAGGACCTGAAGCTGCACCTGCAG ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 BOVACTRII.1 CAT L21717 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTCCCTGCGTCTCGGGAAAATGGGAGCCGCTGCAAAGTTGGCGTTTGCCGTCTTTCTTATCTCTTGTTCTTCAGGTGCTATACTTGGTAGATCAGAAACTCAGGAGTGTATTTTCTATAATGCTAATTGGGAAAGAGATAGAACGAATCGCACTGGTGTTGAATCCTGT ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVADMETDC.1 CAT M95605 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGTTAATATAAAATTATAGCAAAAAAAAAAGGAACCTGAACTTTAGTAACACAGCTGGAACAATCCGCAGCGGCGGCGGCGGCGGCGGGAGAAGAGATTTAATTTAGTTGATTTTCTGTGGTTGTTGGTTGTTCGCTAGTCTCACGGTGATGGAAGCTGCACATTTTTTCGAAGGGACCGAGAAACTGCTGGAGGTTTGGTTCTCCAGGCAGCAACCCGACGCAAACCAAGGATCTGGGGATCTTCGCACCATCCCAAGATCCGAGTGGGACATACTTTTGAAGGATGTGCAATGTTCA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVAK2BPS.1 CAT D90280 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCATAATGCAAGCAAATAAGGAAACTTTATAGGCTGAGGTGTCAGATTGGCTTTGTCTCAAGAAAGACCACAGTTCAAGATGATTGATATTATTTATGTTGCAATTATGTGCATTTAGAAATCAATAAGAGTGCGAGGTTTTGGCGGCCATGGCTCCCAACGTGCCTGCAGCTGAACTGGTCCCGGAGTCTCCTAAAGGCATTCAGGCCGTGCTCTTAGGGCCACCTGGAGCTGGCAAGGGTACCCAGGCACCCAAATTGGGTGAAAACTTCTGTGTCTGCCATTTGGCTACCGGAGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVAKAP.1 CAT M82914 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAAATGACCATATGGAGTAAGACGAAAGGAGTGATTACATCTGGAAGAAATTTTACTCAGTGTGATATTTTTGCCCACTTTTTTGTCATAATAGACTGCTAAGGAAGAGACGATATAGTTTTCTAGAGGAAGAAAAGTGTAATGTGAAAATGGAGATCACAGTTTCTGAAATACAAGTAGAAAGCAAGGATGAGACGAGATCAGCAGAAGTTAGACCTCAGGATGAGAGGCAGGAGGAAAAAGCATCGATGCTCTGCTTCAAGAGAAGAAAAAAAGCAGCCAAAGCAATGAAGCCCAAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 BOVALDHYDA.1 CAT L36128 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AATTCGGCACGAGCAGGAGCGGAACCAGCAATGTCGTCCTCAGCCATGCCAGACGTACCTGCCCCACTCACCAATTTGCAGTTTAAATATACTAAGATCTTCATAAACAATGAATGGCATAGTTCAGTGAGTGGTAAGAAATTTCCAGTCTTTAATCCTGCAACTGAGGAGAAACTCTGT ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 BOVALLERGE.1 CAT L39834 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTGATCAGCTCTTTGGAAGCCAAGATGAGCAGCTCTCAGCTTGAGCAGGCCATTACAGACTTGATCAACCTGTTTCACAAATACTCGGGATCCGATGACACCATCGAGAAGGAGGACCTGCTGCGGCTGATGAAGGACAACTTCCCCAACTTCCTCGGTGCCTGTGAGAAAAGG ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 BOVAMLGNII.1 CAT M63500 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAAACTCACTGAGAACGTGTGTTCAAAGGGCTATCAAGAAATGGGGACCTGGATTTTGTTTGCCTGCCTCCTGGGAGCAGCCTTCTCTATGCCTCTACCACCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAGGTGCTCACCCCTCTGAAGTGGTACCAGAGCATGATAAGACACCCGTAC ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246 BOVANDRE.1 CAT J05426 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TGACTCCCCGCTCCCTCGCTCCCCTCCTCCTCACCCGCCGAGGGGTGGCCCTCAAGAGCCGGACTTTGCCGGCCCCGGCCCCGGGGGGCTGGGACCATGGTGTTTCTCTCCGGAAATGCCTCCGACAGCTCCAACTGCACCCACCCGCCGCCACCGGTGAACATTTCCAAGGCCATTCTGCTCGGGGTGATCTTGGGGGGCCTCATCCTTTTCGGGGTACTGGGGAACATCCTCGTGATCCTTTCC ................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245 BOVARPP19.1 CAT M33618 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGGATGTGAGGTTAGGCGCGAGCCGCGACCTTTGAAGGCAAGAAGGAAGTGCTTGGGCGTCGCAGAACTGGAGAAGCGGAGTAAGAGGGAGCAGTATGTCTGCGGAAGTCCCCGAGGCAGCCTCCGCGGAGGAGCAGAAGGAAATGGAAGATAAAGTGACTAGTCCAGAGAAAGCTGAAGAAGCAAAATTAAAAGCAAGGTATCCTCATCTGGGACAAAAGCCTGGAGGTTCCGATTTTTTAAGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 BOVATPAA.1 CAT M64751 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCCTCTTGGGCTTCCGGCGCGAGGGTCACGGACAGTATGGTTCCGCCGGTGCAGGTCTCTCCGCTCATCAAGCTCGGCCGTTACTCCGCCCTGTTCCTCGGCATGGCCTACGGCGCCAAGCGCTACAATTACCTGAAACCTCGGGCAGAAGAGGAGAGGAGGCTTGCAGCCGAGGAGAAGAAGAAG ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 173 BOVATPX.1 CAT M88690 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCGGCCGCGAGGAGACAAGATGGCGCTGCGGGCGATGCGGGGGATCGTGAACGGGGCCGCGCCTGAGCTACCAGTACCCACCAGCGGGCTGGCGGGGTCTCGAGAGCAGGCGCTGGCAGTGAGCCGAAACTACCTCTCCCAGCCTCGTCTCACCTACAAGACTGTCTCT .......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 BOVBA4.1 CAT M60328 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAGTTGCAAGTCACACTTTATTCACTCTCCAGGATGTCTGGCATGTTCTCTGGGTCCATCTCGGAAACGAGCGGCATGTCTCTGCAGTGCACCAAGTCGGCAGGACACTGGAAGATCGTGGTGTGGGATGAGGAGGGCTTCCAGGGCCGGCGGCATGAGTTCACGGCTGAGTGCCCCAGCGTG .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVCALRET.1 CAT L13462 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TGTTCTTTCTTTAAAGTGTAATGTCTCATCTCTTTGATGAGCTAAGTGATAGCTTTTATTTGTTTGTTTCATTTTGACTTTAGTTTACTCCCCATTGTAGTCTCTTTCCCACAGTTACTTTTCAGTCTTAGTCATCTTAGATGATTTTCATGTGTCTCAATCATTTTTTGCTTTCCTTAGTACTTTCAATTGTACTTCTATTTCATTTTGTCTTTTATATCTGTCTCCACCATATTGTAACCTTCTTGAGGGAGGAAACAGTTTTCTTTTCTGAACAGTTTCTTACCCTAGATCTGAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233 BOVCAMAA.1 CAT M60482 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCTCTTAGCTTCTGTGTAAGTAGTTGTTGAGCTCCTTCTGGAAATATTTTCAGTTACGATAAGTTAGTGTAAATACACGTGAATGGCAGCTTACAGAGAAGTACCCTGTAACCAATATACAGGTACTACTGCTCTTCAGAAATTGGAAGGTTTTGCTAGCCGATTATTTCATAGACACTCCAAAGGTACTGCACATGATCAGAAAACAGCTCTGGAAAATGACAGCCTTCAT ...................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 211 BOVCARBOXG.1 CAT L09726 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCAGGTCGAAAGCTTCCATGGAAGCTTTCGAAAGCTTCCATGGAAGCTTTCGAAAGCTTCCATGGCGGTCTCCGCTCGGCCCGCGCGGGCCCCGCGGGGCTCAGACAAAGTAAAGAAAGACAAGGCTGCACAGACTTCAGGGCCCCGTCAGGGCAGCCGAATGGGGAAACTGTTGGGTTTTGAGTGGACAGATGTGTCCAGCTGGGAGAGG .............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 BOVCASAS1.1 CAT M38641 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CACCTTGATCATCACCCCAGCTTGCTGCTTCTTCCCAGTCTTGGGTTCAAGATCTTGACAACCATGAAACTTCTCATCCTTACCTGTCTTGTGGCTGTTGCTCTTGCCAGGCCTAAACATCCTATCAAGCACCAAGGACTCCCTCAAGAAGTCCTCAATGAAAATTTACTCAGGTTTTTTGTGGCACTTTTTCCAGAAGTGTTTGGAAAGGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVCCP64A.1 CAT L16547 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTAGAGACCTGTCACTGATAGCTGTGGCTGGTTGCTGTGTTTCAAAAGCCTGTTGATTCCTCTGCAAGGCGGTGCAGCATCCTCTAGCCCTTTCCTCATCTCAGACCTACTCGGGTCTGCTTGCGAAAGGATCTATCAGATCAATAAACATGAATGACGAAAACTACAGCACCACCATCTACAACAGAGTCCAAACAGAGAGGGTGTATGAGGATTCAGACCCAGCAGAAAACGGAGGTCCCCTTTACGATGAAGTCCATGAAGATGTGAGGAGGGAAGACAACTTATATGTCAATGAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 187 BOVCHMI.1 CAT M65081 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCAAGCCTCCTGGTGTCCTGCTCCGGCGGCCGCGGTCATGACGGAGAACTCGGACAAAGTGCCCATCGCCCTGGTGGGGCCCGACGACGTCGAGTTTTGCAGCCCCCCGGCGTACGCCGCCGTGACCGTGAAGCCCTCCAGCCCCGCGCGGCTGCTCAAGGTCGGAGCCGTGGTCCTCATTTCGGGG .....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 175 BOVCHYMOB.1 CAT J00003 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCAGCGGCTGGACCCAGATCCAAGATGAGGTGTCTCGTGGTGCTACTTGCTGTCTTCGCTCTCTCCCAAGGCGCTGAGATCACCAGGATCCCTCTGTACAAAGGCAAGTCTCTGAGGAAGGCGCTGAAGGAGCATGGGCTTCTGGAGGACTTCCTGCAGAAACAGCAGTATGGC MMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 208 BOVCI51KD.1 CAT M58607 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCTGTGAAGGTGACAGCGGGCGGTCACTGGCTTGCCTTTCCCCCCCCCATCCCCGCGATGCTGGCGGCACGGCGGCTGCTCGGCGGGTCGCTCCCCGCGCGGGTGTCTGTGCGATTCAGCGGCGACACGACAGCGCCCAAGAAAACCTCATTTGGCTCGCTGAAGGACGAAGACCGGATCTTCACCAACCTGTATGGCCGCCATGAC ..........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 271 BOVCLPL.1 CAT D14074 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AATTCCGGAGGAAATTCATTCTGCTCCAATGGTTCTTCGCGGACCTTGTGACTTTAGGGTTCGAGCTGCACGGTGACCACGCGGTGTTACGAGGCGGTCATACACGCGTCCTAGGGCCACAATGTCGCATCCATCCCCCCAGGCTAAGCCTTCCAACCCCAGTAACCCTCGAGTTTTCTTCGACGTGGACATCGGAGGGGAGCGAGTTGGTCGAATTGTCTTAGAATTGTTTGCAGATATTGTACCCAAAACTGCAGAAAATTTTCGTGCA .........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 BOVCYB560A.1 CAT M76747 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCGGGGTTCCTTTGGGAACCACAGCCAAAGAAGAGATGGAGAGGTTCTGGAGTAAGAACACTACTTTAAACCGTCCTTTGTCTCCCCATATCAGCATCTACGGCTGGTCTCTTCCCATGGCGATGTCCATTTGCCACCGTGGCACTGGTATTGCCTTGAGTGCAGGAGTCTCTCTTTTTGGCTTG .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVCYTCA.1 CAT J05058 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTTGGAATTAATTATGAGTTGATTTTGAAACAATTCAGTATTAAATCAGCTGGGATGATTACTGTTCTCTCCATTCCTTTGGGGGGACTCTGCAAGGGTACTAGACGGCCGAATTGCTAGAGACCAGCAGCTGTAGTTGCAGCCATTTTATGTTCAACCTCAGGATGTTTCCCTTGGCCAAAAACGCACTAAGTCGTCTGAGAGTTCAAAGCATTCAGCAAGCAGTGCAAGCAGTGGCAAGGCAGATCCATCAAAAGCGGGCACCTGATTTCCATGACAAATATGGTAATGCTGTATTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVDARPP32.1 CAT M27444 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCCTCGCCGGCGGGTATTTTTATCTGTGCGTGAACAGCCCTCCAGCTCCTCTCTGCCACACTCAACCCGCTGCCGCCGCGGCCCGGAGCAGCGCGGGGGAGCGGAGCGGGATCGCAGCCCGAGACCCCACGACGCGCGCCCCGCCCGCCATGGACCCCAAAGACCGCAAGAAGATCCAGTTCTCCGTGCCCGCGCCCCCCAGCCAGCTCGACCCCCGCCAGGTGGAGATGATCCGGCGCAGGAGACCAACCCCTGCCATGCTGTTCCGGCTCTCAGAGCACTCCTCACCAGAGGAGGAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 265 BOVESELECT.1 CAT L12039 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGTCAAACCTGCAGGAGTGGCACAACACAGAAGCAGCAGCAACACGGGAGGAATCTAATACTGAACGAAAAGCATTTTCAAGTCTAATCTTTGGATCAAAAGAACTCTTGAAGTCATGATTGTGTCACAGTATCTCTCTGCTCTCACTTTTGTGCTTCTCCTGTTTAAAGAAAGTAGAACCTGGTCTTACCATGCATCCACGGAAATGATGACTTTTGAGGAGGCCAGAGATTATTGCCAGAAAACTTACACAGCTCTAGTTGCA ...................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 BOVFESUP.1 CAT M34336 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGAGCTGCTGTCGCCATGTTGTCGGTTGCCGCCCGCTCGCGCCATTCGCGCCCGTCCTATCGGCCACGTCCCGCGGGGTGGCGCGCGCTGCGGCCCTGGTACAGCCGGTCGTCCAAGGAGTCGCCTGTGCTGGACTTGAAGCGCTCCGTCCTGTGCCGGGAGTCG ...............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 176 BOVFPKPA.1 CAT M34241 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAACCGACATCTCCTGAAGAGTTGCCATGTCCGGGAATCCTGCCTCTTCCTCAGAACAGAACAACAATAGCTATGAAACCAAAGCAAGTCTCCGAATATCAGAGAAGAAATGTTCATGGGCATCTTACATGACAAACTCTCCAACCCTCATCGTTATGATTGGCTTGCCAGCCCGT ..........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 211 BOVFPTA.1 CAT L00633 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTTCAATGCGCGTTGTGGTTTCGAAGCTGAGCCCTATACACCGCCTGCTGCTTTCCGGATCATGGCTTCTCCGAGTTCCTTCACCTACTGTTGCCCTCCATCTTCCTCCCCTATCTGGTCAGAACCGCTGTACAGTCTGAGGCCAGAGCACGCGCGGGAGCGGTTGCAGGACGACTCGGTGGAAACAGTCACGTCCATAGAACAGGCAAAA .............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 BOVFRA.1 CAT L27218 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGAGAACGGGTTGCATGTTGCATTCTGATTCAAGAGCCTGAAGAGTCAAGAGTTTTAGCGATGTTCATCTTCATTTTTCTGTCCTTGTGGACTCTTCTGGTGATGGGCAGGGAGGAAGGTGGTGTTGGGAGTGAGGAGGGAGTTGGGAAGCAATGTCATCCCAGCCTGCCTCCCCGCTGCCCCTCCAGATCCCCTAGTGACCAGCCCTGG ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 185 BOVFTASE.1 CAT M74083 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCCGCCGCAGGAAGAGGCGGCGGCGGCGTCCCCTATGGACGACGGGTTCCTGAGCCTGGACTCTCCCACCTATGTCCTGTACAGGGACAGGCCAGAATGGGCTGATATAGATCCAGTGCCGCAGAATGATGGCCCCAATCCAGTGGTCCAGATCATTTATAGTGAGAAATTTCAGGACGTCTAT ...................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247 BOVGGAM3.1 CAT M58349 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AACTCCCTGCAAGGTGGGGGCACCCATCTCAGGCAGAAGGTTTTGGTGCACCCCACTGATCAGATTCCCCAGGACTGTCGCTGCCTGTGGCCTCAGGATGAAAGGGGAGACCCCTGTGAACAGCACTATGAGTATTGGGCAAGCCCGCAAGATGGTGGAACAGCTTAAGATTGAAGCCAGCTTGTGCCGGATAAAGGTGTCCAAGGCAGCAGCAGACCTGATGACTTACTGTGATGCCCACGCCTGT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 BOVHIS2AZ.1 CAT M37585 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCCTTTTCTCTGCCTTGCTTGCTTGAGCTTCAGCGGAATTCGAAATGGCTGGCGGTAAGGCTGGGAAGGACTCCGGAAAGGCCAAGACAAAGGCGGTTTCCCGCTCGCAGAGAGCCGGTTTGCAGTTCCCGGTGGGCCGTATTCATCGACACCTGAAATCTAGGACGACTAGCCATGGACGTGTGGGCGCGACT ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249 BOVICAM3A.1 CAT L41844 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTTAGCTGCAGTCACAGTTCTTCCTTCCCCTGGAGGTCCTGCCTGTTCGATGGTGCCCAGCGCTTCATTAAGGGAACTTCTTCCTCCAGGCTGGTCACCATGATCGCCTCAGGGCCACCACCCAGGGTCTACTGGACTTCGCTCATCTTTCTGCTTCTTGCCTGCTGTCTGTTGCCCACAGGTGCCCAGGGACAGACCTACCAGGTACGAGTGGAGCCGAAGGACCCAGTGGTGCCTTTTGGAGAGCCC ...................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 BOVIGLAA.1 CAT M21660 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAAGCATAAAATAAATAAAGGAATAAAGTTTCATTTTTTGTTCCATGTATACTCATTTAAAAATTATCTTAGTAACATGATGCAAGGATTGAAAAGTTGCCATATTTCCAGTCGCAGTCAATTCAAAAGTGAGGAGGGGGCATTCACTTTGAAATCCTCTTAGACAATAATAGAATAACATCGGTAGTGCCGGT ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVIL2RA.1 CAT M20818 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGCCAGGGATGACAACCTGAGCGGACTCACCCTTCATTCCCGTCTCCCGGTGCGATGCCAACAAGAGGCTGAAAGGAAACCCGGCGTTCTGCAGAGCAGCACTTTCTCTTCCCAGCCCGACATCGGCAGTGGTCTCAGGGGCCAGGAGGATGGAGCCAAGCTTGCTGATGTGGAGGTTCTTCGTATTCATCGTGGTACCTGGCTGCGTGACAGAGGCTTGTCATGATGACCCTCCGAGTCTCAGAAACGCCATGTTCAAGGTCTTCAGGTACGAGGTGGGCACCATGATAAACTGCGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 BOVIL3A.1 CAT L31893 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AATCATCCTGCCAGCCCAAACATGAGCAGTCTCTCCATCTTGCACCTCCTTCTGCTCCTGCTTGCACTCCATGCTCCTCAGGCAAAGGGGTTGCCTGTCGTGACATCGAGGACTCCATATTCTATGTTGATGAAGGAAATTATGGATGACCTAAAGAAAATAACTCCGAGT .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 BOVLFCMB.1 CAT L04188 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTCCGTTGCTGTCGGGGGCTGAGGCAGACGGAGGGCTCGGCAGAATCTGCTACTCAGGTCACCATGTACAGCTTCATGGGAGGCGGCCTCTTCTGTGCCTGGGTGGGGACCATCCTCCTGGTGGTGGCCACGGCGACAGACCACTGGATGCAGTACCGGCTGTCAGGGGCCTTTGCCCACCAGGGCCTGTGGCGATACTGCCTGGGTACCAAG ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 272 BOVLPO.1 CAT M58150 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAGAATCTTTCCTTCTGGGCTTTTCTCTGAGATTAACTCTTGATAGACGGTATAAAAGGCCGGCTCCTCCAAGCAGAGAAACTCCCTCTGGCTGCCACAGGAGGCCAAGGCACTCAATAGCGATGTGGGTCTGTCTCCAACTTCCAGTCTTTTTGGCTTCCGTGACCTTATTCGAGGTTGCAGCATCTGACACAATTGCACAGGCCGCCAGCACCACCACCATCTCTGATGCTGTGAGTAAGGTCAAGATCCAGGTCAACAAGGCCTTCCTG ..........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 BOVLVCR.1 CAT M98430 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGCTCGCTGCACACGGAGAGCGACGAGGACATCGCACCTGCCCAGCGCGTGGACATCGTCACCGAGGAGATGCCTGAGAACGCCCTGCCCAGTGACGAGGACGACAAAGATCCCAATGACCCTTACAGGGCCCTGGACATCGACCTGGATAAGCCCCTAGCTGATAGTGAGAAGCTGCCTGTCCAGAAACACAGAAACGCTGAGACCTCCAAGTCCCCT .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 BOVMAAL.1 CAT L42867 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GACTACGAGAATCCCAAGATGAAGGCCGTGTTCCTGACTCTCCTCTTTGGACTGGTTTGCACTGCCCAGGAAACTCCAGCTGAGATAGACCCCTCAAAGATTCCAGGAGAGTGGCGCATCATTTACGCAGCTGCAGATAACAAGGATAAGATTGTGGAAGGAGGCCCA MMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVMARCKS.1 CAT M24638 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CACCACCCCCACTCCCCCCTCCCTCCGGTGTGTGTGCTGCTGCCGCCGCTGCTGCTGCCGCTGCTGCTGCCGCTTGCCCCGTCGTTACACCAACCCGAAGCTCTTTGTTCCCTCCTTGGATCTGTTGAGTTTCTTTGTTGAAGACCAGCATGGGTGCCCAGTTCTCCAAGACCGCCGCGAAGGGAGAAGCCACCGCGGAGAGGCCCGGGGAGGCGGCTGTGGCCTCGTCGCCTTCTAAAGCGAATGGGCAGGAAAATGGCCACGTGAAGGTAAACGGCGATGCTTCTCCCGCGGCCGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 BOVMG.1 CAT D00409 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAGCTGTCGGAGACAGACACCCAGTCAGTCCCGCCCTTGTTCTTTTTCTCTTCTTCAGACTGCGCCATGGGGCTCAGCGACGGGGAATGGCAGTTGGTGCTGAATGCCTGGGGGAAGGTGGAGGCTGATGTCGCAGGCCATGGGCAGGAGGTCCTCATCAGGCTCTTCACAGGTCATCCCGAGACCCTGGAGAAATTTGACAAGTTCAAGCACCTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 BOVMOCHEM.1 CAT M84602 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GACCAACAGCTTCCACGCTGAAACTTGAATCCTCTCGCTGCAACATGAAGGTCTCCGCTGCCCTCCTGTGCCTGCTACTCACAGTAGCTGCCTTCAGCACCGAGGTGCTCGCTCAGCCAGATGCAATTAACTCCCAAGTCGCCTGCTGCTATACATTCAACAGTAAGAAGATCTCCATGCAGAGGCTGATGAAC ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 BOVMT.5 CAT J01394 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Mitochondrion Bos taurus AATCACTAAGAAGCTATATAGCACTAACCTTTTAAGTTAGAGATTGAGAGCCATATACTCTCCTTGGTGACATGCCGCAACTAGACACGTCAACATGACTGACAATGATCTTATCAATATTCTTGACCCTTTTTATCATCTTTCAACTAAAAGTTTCAAAACACAACTTTTATCACAATCCAGAACTGACACCAACAAAAATATTAAAACAAAACACCCCT .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 BOVMT.7 CAT J01394 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Mitochondrion Bos taurus TGGTACTTAGTTTAAAATAAAATAAATGATTTCGACTCATTAGATTATGATTTAATTCATAATTACCAAATGTCTATAGTATACATAAACATTATAATAGCATTCACAGTATCTCTTGTAGGACTACTAATATACCGATCCCACCTAATATCCTCCCTTCTATGCTTAGAAGGAATAATGCTATCCCTATTCGTTATAGCAGCCCTAACAATCCTCAAC .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223 BOVMT.9 CAT J01394 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Mitochondrion Bos taurus TATTCTTACATGGAATCTAACCATGACTAATGATATGAAAAACCATCGTTGTCATTCAACTACAAGAACACTAATGACTAACATTCGAAAGTCCCACCCACTAATAAAAATTGTAAACAATGCATTCATCGACCTTCCAGCCCCATCAAACATTTCATCATGATGAAATTTCGGTTCCCTCCTGGGAATCTGCCTAATCCTACAAATCCTCACAGGCCTATTC .........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 BOVMTCO2.1 CAT M10544 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Mitochondrion Bos taurus GAGGTGTTAGTAAAACATTATATAATTTTGTCAAAGTTAAGTTACAAGTGAAAGTCCTGTACACCTCATATGGCATATCCCATACAACTAGGATTCCAAGATGCAACATCACCAATCATAGAAGAACTACTTCACTTTCATGACCACACGCTAATAATTGTCTTCTTAATTAGCTCATTAGTACTTTACATTATTTCACTAATACTAACGACAAAGCTG .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 BOVMTNUBA.1 CAT M22539 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCGAAGCCCGGAGGCCCGCAGTTTGGCCAGCCATGTTCCTCTCCGCGGCGTTACGGGCCCGCGCGGCCGGCCTCGCCGCCCACTGGGGAAAACATATAAGAAATCTGCATAAGACAGCTGTTCAGAATGGAGCTGGAGGAGCCTTATTTGTGCACAGAGATACTCCTGAGAATAACCCAGAA ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 BOVMTTUF1M.1 CAT L38996 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCCCTTTTCCTGCTGCACGCGCCAGCGCCGGTGCTCGGTACACTCTACGGCGCCAGTACGACCACAATGGCGGCCGCTACCCTGCTGCGCGCGACGCCCCTTTTCAGCGGTCTCGGCGCCGGCCCGGCACCACTATTGCAGGGTCTTTTGCGGCCGCTGAAGGCTCAGGCACTGCCCGTCTTGTGCCGTGGCCTGGCTGTGGAGGCCAAGAAGACC ..................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 BOVMUC.1 CAT M36192 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCCCAACTGGTAAAATCACAGGATCCCGGGAGAACAACTTGGGAGTCAGGAAGTGAAGTTGCCACATATGAAGGTACTTCAGGAAAATTCTCCAAGGCACGCCATATCTGGGAGTTCCCACACAGAGGCCACAACTTTAATAGTGAGCAACAGCACATCTGGAACTGGGCTCAGACCTGAAGATAACACTGCAGTAGCAGGAGGCCAAGCGACTGGG .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVMYHC.1 CAT J02819 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGACTCCTATGCCCCCTTCCTGTCACACTAGGATTTCATCTACCATTCTCTGATATTGAAGTTACACCCTGGTTCCAGCGTGGGTTACTGGCCGTGAAAGCTGATCGGATACCAGCAAACTGATCCCAGGACCAATAGCTCCTCTGGACATGACCCTTCTGGAAGGTTCCGTGGGGGTGGAGGACCTTGTGCTCCTGGAACCCCTGGAGCAGGAGTCTCTGATCAGGAACCTCCAGCTGCGCTATGAAAAGAAGGAGATTTATACCTACATTGGGAACGTGTTGGTCTCAGTGAATCCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVNE3B.2 CAT L27869 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTTCAATCTTCGAAGGTGGCTACAAAGCACATGCGCCCAAGTGGGAATCCAAGGACTTTAGACCTAACAAAGCCTCCGAAACTAGTAGGACTACTACCACATCTTTGTCCCCTGAGCTGATCCGCTTCACAGCTTCCTCCTCGTCTGGGATGGTGCCCAAATTGCCAGCTGGCAAAATGAATAACCGTGAGCTCAAACCCCAGCCTGATCTAGTCTTGCTTCCGTTGCCCACTGCCTATGAGCTAGACAGCACCAAACTGAAGAGCCCACTAATTACTTCCCCCATGTTCCGTAATGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226 BOVPAFAH.1 CAT D30789 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TGGTTTCTTCCCCCAGGACTGGCGCTAGATTTCCCCCGCCTACTCTCGGCCTTCAGGAGCGGAGGCGAGTGGCAAGATGAGTGGAGACGAGAACCCAGCCAGCAAGCCCACGCCAGTGCAGGACGTGCAGGGTGACGGGCGCTGGATGTCCCTGCACCATCGGTTCGTAGCCGACAGCAAAGATAAGGAACCCGAAGTCGTCTTCATCGGTGACTCCTTGGTCCAG ............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 BOVPAG.1 CAT M73962 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTTGGATCCAGGAAATAAACATGAAGTGGCTTGTGCTCCTCGGGCTGGTGGCCTTCTCAGAGTGCATAGTCAAAATACCTCTAAGGAGACTGAAGACCATGAGAAATGTCGTCAGTGGAAAAAACATGCTGAACAATTTTCTGAAGGAGCATGCTTACAGTCTGTCCCAG ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVPHOSD.1 CAT L13938 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAGCCTGCCGCATTTACTTATGAAAAGTTCTATGAACTGACACAAAAGATTTGTCCTCGGACAGATATAGAGGATCTTTTCAAAAAAATCATCAACGAGATCCTCGACTGAATGAAATTTTATTCCCATTTTATGATGCTAAAAGGGCAATGCAGATCATTGAGATGTATGAGCCCGATGAAGATTTGAAGAAACAAGGCCTCATATCAAGTGATGGGTTTTGCAGATACCTGATGTCAGATGAAAACGCCCCCGTCTTCCTAGATCGTCTAGAGCTGTACCAAGAAATGGACCACCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 BOVPIGR.1 CAT L04797 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCTCGTGCCACTGTCTTTCAGCAACCACACAGGACGGTGGCTGGCGGCAGAGACCCGCGGGAGCCCCCAGCGATGTCGCGCCTGTTCCTCGCCTGCCTGCTGGCCATCTTCCCAGTGGTCTCCATGAAGAGTCCCATCTTCGGTCCCGAGGAGGTGACCAGCGTGGAAGGCCGCTCAGTGTCCATCAAGTGCTACTACCCGCCCACCTCCGTCAACCGGCAC ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 BOVPNT.1 CAT M22754 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GTGATTTACCTTTAAGGACATTGGGGATCCAGAAAATCGGGAACTTCTGTGAACATGGCGAACCTACTGAAAACAGTGGTGACTGGTTGTTCATGCCCTTTCCTCAGCAATTTGGGGTCCTGTAAGGTTCTACCAGGGAAGAAGAATTTTTTACGAACATTTCATACTCATCGGATACTGTGGTGTAGTGCCCCTGTAAAACCA ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 BOVRALBPC.1 CAT J04214 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGACGAAGTGGGCTCCTTCTTTGTTTGCAGCACTTCCAGTCTTCCACAGACAGCATGTCAGAGGGGGCGGGCACGTTCCGCATGGTCCCTGAAGAGGAACAGGAGCTCCGTGCCCAACTGGAGAGGCTTACGACCAAAGACCATGGACCTGTCTTTGGCCCGTGCAGCCAGCTGCCCCGCCACACCTTGCAGAAGGCCAAGGAC ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 202 BOVRETINA.1 CAT L11356 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTTGCTCAGTCCACAGTTGGTGCCAGAACTCTCAATCCTCTACTGAGAGAAAATGTCCAGCCAAGTTGAACATCCAGCTGGTGGTTACAAGAAACTGTTTGAAACTGTGGAGGAACTATCCTCACCGCTCACAGCCCATGTTACAGGCAGGATCCCCCTCTGGCTAACCGGCAGTCTCCTTCGATGTGGGCCAGGACTCTTT ....................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVRHKIN.1 CAT M73836 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TAGCCCAAGCTGCGTCAGCGGGCTTCCCGGGGCTCCCACCGCCCGGCCAGCCTCCCGTCCCGAGGGCGGGCACAGGCCACAGGCCAAGGGCGGCGGATCAGTCTGGCTGGGGACGCGGGAGCCGGACGTGGAGAAGGCCTGGTGCCGGGATGGATTTCGGGTCCCTGGAGACGGTGGTGGCCAATTCAGCCTTCATTGCGGCCCGGGGCAGCTTCGATGCGAGCAGCGGCCCGGCCTCTCGGGACAGGAAGTACCTGGCCAGGCTCAAGCTGCCCCCGCTGTCCAAGTGCGAGGCGCTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235 BOVRIB2A.1 CAT M88287 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTTTACATAGGGGCTCAGAAACCTTAAAGGGAGTGGTATTGGTACCGGTGGTCAGTTGGGCGATTGGTCACAGAATTCAGTAACAATGGGGAACGTTTTTGAAAAATTGTTTAAAAGTCTCTTTGGGAAAAAGGAGATGCGGATTCTTATGGTGGGTTTGGATGCCGCTGGAAAAACCACCATCTTGTACAAACTGAAGCTGGGAGAGATTGTGACTACCATCCCCACGATAGGT .....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 BOVRP3A.1 CAT D13613 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TGGAGTGCTGGGCTTCAGCCATGACTGACACCGTGTTCAGCAGCAGCTCAAGCCGTTGGATGTGTCCCAGTGACCGACCCCTGCAGTCAAATGATAAAGAGCAGCTCCAGACAGGATGGTCTGTCCACCCCAGCGGTCAGCCGGACAGACAGAGGAAACAGGAAGAGCTG ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 287 BOVRS157A.1 CAT M34915 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTTAGCCTCAGCCGTGACCGGCCCCGTCCCGCGGCGCCGGGAGTTCGTGTGAACGGGTAGGTGTACCGACTTCGCCCGTCCGTGAATCCCGTGGTCGCAAAGGCCCGCGCGGCGGGCCGGGTTCTGCCGATACCTTAATGGGCTGTGCGCGAGGAGAGCCTCAATTGCAAGTTGGTCGAGGAGATCGCCACGCTGGTGCAGAGCTGGCCTCACTAGTTGCGGCTAGTGTAGGACGTTGTACTCCGACATTCCGCAAGCCCTTCCACACGGACAGTCCTAGCATCCAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVRSC.1 CAT L41692 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TAAAATCTGGAGAAGAAGATGAAGAAATTTTATTTAAAGAGAGAGCCAAACTTTACAGGTGGGATCGAGAGGCCAGTCAGTGGAAGGAACGTGGCGTTGGAGACATTAAGATCCTCTGGCACACGGTGAAGAATTACTTTCGGATTCTGATGAGGAGAGACCAGGTGTTCAAAGTGTGTGCGAACCACGTCATCACCAAGACGATGGAACTGAAACCCTTGAATGTTTCCAACAATGCTTTAGTTTGGACTGAATCAGATTATGCTGATGGAGAAGCCAAAGTGGAACAGCTTGCAGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238 BOVSGII.1 CAT J05468 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAAACGGTCCGAGCAGCTCAAGCCGCGGACCAGGAGGAACATGCTGTGGACTTCCTCTGCCATATAAATAAGAGGAAATCTTTCAAACATGGCAGAAGCTAAGACTCACTGGCTTGGAGCAGTCCTGTCTCTCATCCCTTTAATTTTCCTCCTCTCTGAAGCTGAAGCTGCTTCATTTCAGAGAAACCAGCTGCTTCAGAAGGAACCAGATCTCAGATTGGAAAATGTCCAAAGGTTT ........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 BOVSMGGDS.1 CAT M63325 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GTACCATGGCTCACCCTCTGGAGGAACATGGATAATCTCAGTGATACCTTGAAGAAGCTGAAGATAACAGCTGTCGACAGAACTGATGATAGTTTAGAAGGATGCTTGGATTGTCTACTTCAAGCTTTGACACAAAATAATATGGAAACAAGTGAAAAAATCCAAGGAAGTGGAATA ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 BOVSPIS.1 CAT L22095 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGCTGGATTGCCGCAGAAATGTCCCACGGGAGAATGAATCTGGCCCTGTCTCTGGTCTTCATCCTCTGTGGCCTGTTTAATAGCATCTTCTGTGAAAAGCAACAACACTCTCAAAAGCACATGAACCTAGTCTTATTAAAGAAAATTTCAGCTCTCTCCCAGAAGATG ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 BOVSPP.1 CAT D25220 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAAGGAAGCAAGCTGGTCGGAAGGGGTTGTGACAACCCCAGCCATGTGGAGAGGCCTGGGGCTGGCTCTGGCTCTCTGCCTCCTCCTAACCGGAGGGACAGAGAGCCAGGGCCAAAGCTCCTATTGTAAGCAACCTCCACCCTGGAGCATAAAGGATCAAGACCCTATGCTGAACTCCTACGGTTCAGTGACT ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BOVTAUB.1 CAT M26158 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCTCTGCCATATGTAAGTTTCATAATGTACGTCATATGCTAGCATCGTAGTATATGCATTAGCTGATGAATGACTGCAAGTTCATGGTCACTTTCTGGTCTTCCTGATAAGGACTGTTAAGGGTGAATGATCCACATGGTTTGGAGATCATGCCTTTAAACCATTACCTGCCTTATTTGTTTTTAGTTAGTGTCCTTTTTCAGTTTGTACCTTTCTCCCATGTGCTGACTTTTATTTTGATTTTATTTATGTTTATGTTTAAGCCATCCACACCTTCTTCCGCTAAAACCCTGAAAAAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243 BOVTRNB2.1 CAT M13236 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCTCTGGGGGACTGAGGACAGTGAGGAGAGCAACAGAGACGTCACATATCTCAGATTCTTTGAGGTGGCTTTGAAGAGCACTAAGATTAGAAGATGAGTGAACTTGACCAGTTACGGCAGGAGGCCGAACAGCTTAAAAACCAAATTAGAGATGCTCGGAAGGCGTGTGCAGATGCGACTCTCTCTCAGATCACAAACAACATCGACCCTGTGGGAAGAATCCAGATGCGCACCAGGAGGACG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 264 BOVUDPGPYR.1 CAT L14019 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCGTCATTTGTTAAAGTAGGAGTGGAAGAAAGACCTCTATAGCGTTGACTCCTCTAGACATTTAAATATATTTATATTTGTAAGCCAGAGTATTTTAATAAATCCCTAAAATGTCGAGATTTGTACAAGATCTCAGCAAGGCAATGTCTCAGGATGGTGCTTCTCAGTTCCAAGAAGTCATTAGACAAGAACTAGAATTATCTGTGAAGAAGGAACTAGAAAAGATACTCACCACAGCACCATCACATGAATTTGAACAC ..................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 178 BOVUKR.1 CAT L03545 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGATCGCGAGCAGGAGCCACCGTCGGACATGGGCCAACCGCTGCTGCTACTGCTGTTGGTTTACACCTACATTCCAGGCTCTTGGGGCCTGCGGTGCTTACAGTGTGAGAACACGACGAGCTGCAGTGTTGAAGAGTGTACTCCTGGTCAGGACCTCTGCAGGACCACGGTCCTGAGT ............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 BOVUPC.1 CAT L06665 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCGGGGGTGACCTCGAGGCTGCGGTGACCATGGGCCGCCAGTTTGGGCATCTGACACGGGTGCGGCATGTGATCACCTACAGCTTGTCGCCCTTCGAGCAGCGCGCCTTCCCGCACTACTTCAGCAAGGGCATCCCCAACGTTCTGCGCCGAACTCGGGCGTGCATCCTTCGCGTCGCG .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 283 BOVVHAS.1 CAT L31770 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AACATAGCACGTTAATTCGGCCAGGAGCTGCGGAGGCTGCGGGCTTGGTTTGCCGCAGCTGCCTTGGCGGCGGCGCCCAGCTGGAGGTTGCAGAGAAATCCCGGTACTCAGCTGACCGGTCCTTTCTGCCACCATGGGGGAGCTTTTCCGGAGTGAAGAGATGACACTGGCCCAGCTTTTTCTACAGTCAGAAGCTGCTTATTGTTGTGTCAGTGAATTAGGTGAACTTGGAAAGGTTCAGTTTCGTGATTTAAATCCAGATGTGAACGTTTTCCAGAGGAAA .....................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTAC11MR.1 CAT Z49806 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCCGTGCAGTAGCCAGGCTTGGCAGCAGGAGCAGTGCGGGCCCTGTGTACCCATGGAGCTGCCAGCCAAGGGGGGTACCTTCCCAGCCCCACCTGCCAGGCTGGGAGAGCCAGAGGCCTAGGTGCGCAGCCGTGGGTGTTGGCAGACAAATGCTCCCCAGGCCGTGGGGTTTCCTGCGTGGACCACTGGGTGTGCCAAGGTGGAGGATGCCAGCCAAGGGGCGCTACTTCCTCAACGAGGGCGAGGAGGGCCCCGACCAGGATGCGCTCTACGAGAAGTACCGCCTCACCAGCCAGCAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 178 BTB15SMR.1 CAT X64898 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAGCGCGGTTTTGCGCCGGGTCGTCAAGATGTCGTTCCCCAAGTACGAGGCATCGCGCTTGTCCAGCCTACCTACTACCCTCGACCCAGCTGAATACGACATATCTTCTGAAACCCGGAAAGCACAAGCCGAGCGGTTGGCCATAAGATCCCGGCTTAAACGGGAATACCAGCTTCAG ............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 196 BTCALICIN.1 CAT Z46968 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCCAGTACCTGCTGCTGATCTTCTGTCTCACCCAGCAAGAAGCACCATGAAATTGGAATTCACCGAGAAAAACTACAACAGCTTCGTACTGCAGAACCTGAACAAACAGAGAAAACGCAAAGAGTACTGGGACATAGCCCTGACTGTGGACCACCATGTCTTCTTTGCACATCGCAATGTGCTGGCTGCAGTCTCT ..............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 BTCGMPPG.1 CAT X04823 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCGTGAGGGAGTCCAGAAGCTGAAGGTCACTGCGGGATCTCTGCCAACCTGGCCATGAACCTGGAGCCACCCAAGGCCGAGATCCGGTCGGCCACCAGGGTGATGGGGGGACCCGTCACTCCCAGGAAAGGGCCCCCGAAATTTAAGCAGCGGCAAACCAGGCAGTTCAAGAGCAAGCCCCCCAAGAAAGGTGTCCAAGGGTTT ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 BTCI10KD.1 CAT X59048 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGTCGTCCTGTCTGCGCCCGAGTCACAGCCATGGCGGCCTCGCTTCTGCTGCGGCAAGGACGAGCCGGGGCGCTGAAGACTGTGCTTCTGGAAGCAGGCGTGTTTCGAGGAGTTGCTCCTGCAGTTTCTCTCTCTGCAGAATCAGGAAAGAATGAAAAGGGATTACCACCGAACCCCAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 BTCI15IP.1 CAT X63220 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGCGGCCAGCGAGGAGAAAAGGACACAGCGGCCGGACGCCATGCCTTTCTTTGATGTGCAGAAAAGGCTGGGTGTTGACCTAGATCGCTGGATGACAATCCAGAGTGCTGAGCAGCCTCACAAGATCCCATCCCGATGCCATGCTTTTGAGAAGGAATGGATAGAGTGTGCACATGGAATCGGCAGTATC ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 BTCI18IP.1 CAT X63215 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGTGTCTGCCTGTAGCAAGATGGCGGCGGTCTCAATGTCAGTGGCGCTGAGGCAAGCGTTGTGGGGGAGAAGGGTAGCGACTGTAGCTGCCGTTTCCGTTTCCAAGGTTTCGACCAGGTCGTTGAGCACTTCCACATGGAGGCTGGCACAGGACCAAACTCGAGACACG ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245 BTCI19.1 CAT X59697 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGACGCTAGGTGGCCTCCGAGTTCGGAAGGGGAGTTCAAGGAGACGGGGGAGACGCGGCAGCGGGCACCTCCTCGGGGTCGCGGCTACAGCCATCATGCCGGGGATAGTGGAGCTGCCCTCTCTGGAGGATCTGAAAGTGCAGGAGGTGAAAGTCAGTTCGTCTGTGCTGAAAGCTGCGGCCCATCACTACGGAGCTCAGTGCGACAAGCCCAACAAGGAGTTCATGCTATGCCGGTGGGAAGAG ...............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 164 BTCI39.1 CAT X59418 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GATTCTGGGAGAATATGGCGGCCGCCGTTCACCCCCGAGTTGTCCGGGTCCTGCCAATGTCACGTTCTTCTGTTCCTGCCCTAGCCGCCTCTGTGTTTCACAGCCCACCCCAGCGCCAGCTTCATCATGCAGTCATACCACATGGGAAAGGTGGGCGTTCCTCC ..............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 BTCI42.1 CAT X59419 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGTCCTTGAGCCGGTGCAGACAGCGGAGCCATGGCCTTGAGGCTGCTGAGACTTGTCCCACCGCGCGTGGGAGGAATTCATACAAGTGTCCAGTTCAAGCTGCAGTATGGCCCGTTGGCGTACATACTTGGTGAAAAAGCAACCAAAAAGATGACAGAAAAGAGCAAACTGATAACTGTA ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 BTCIAGGG.1 CAT X63216 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCGGCGGTGCGGTCTGGGTAACGGCCGGGCTAACGATGGCTGGCATGTCGGCTCTGAAGCGACTGGCGCCGTTCGCTCACGTTGGAGGCCACCTCTTCAGAGGCCGCTGCGCGAGGGCGGCTGGAGCCCGTGGCGTCCGTCGGGCTGGCGGAGGTGCGCACATTGAGCCCCGGTACAGACAGTTC ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 BTCIASHI.1 CAT X63209 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGCATGTGCGGGGTGAAACTGAAAGAAGGTGAAGATGGCGGCGGCCAGGGCGGGGGTCCTGGGAGTCCGATGGCTGCAAAAGGCAGCCCGAAACGTGGTGCCGCTGGGTGCACGGACAGCCTCCCACATTACCAAGGACATGCTCCCGGGACCCTATCCCAAGACCCCAGAAGAACGGGCTGCC ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 BTCIB12.1 CAT X63213 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGGGGTGAATCTTGAGTGTCCTGAGAGGTCAGATTGCTGTCAGACATGGCCCACGGACATGGACATGAACATGGTCCTAGTAAAATGGAACTTCCAGATTATAAACAATGGAAGATAGAAGGGACACCATTAGAAACTGTCCAAGAGAAACTGGCCGCACGAGGACTAAGGGATCCATGGGGCCGCAATGAAGCT .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240 BTCIB17.1 CAT X63212 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGGTCGCTTTGCAGAGCGGGAGCGCGCGTAAGTGACAAGACCCTGGTTCGGGTGCGCGCCGTCTCTTGCTGCCTTGGTATCAGCAGCGACATGTCGGGGTATACGCCCGAGGAGAAACTGCGGCTGCAGCAGCTTCGAGAGCTAAGAAGGCGATGGCTGAAAGATCAGGAGCTGAGCCCCCGGGAACCCGTGCTGCCTCCGCAGAGGGTGTCGCCTGTGGAGCGATTCTGGAATAAATTT ..........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 BTCIB8.1 CAT X63219 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGGTCTAGGGCGGATGATTGAGTACTAGCCGAGATGGCGGCGGCTGCAGCGATTCGTGGGGTCCGAGGCAAATTGGGTCTTCGTGAAATTCGTATCCATTTGTGCCAGCGCTCGCCCGGCAGCCAGGGCGTCAGGGACTTCATTGAGAAACGCTATGTGGAGCTGAAGAAAGCGAATCCCGAC .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 BTCIKFYI.1 CAT X63214 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCCAGGAAGCCAGGCAAGATGGCGCCGTCCGCGTTGTTGCGGCCATTCTGGAAGCTGCTGGCCCCGGCTAGGTTCCCGAGTGTCTCTTCATCTCGGTCAAAGTTCTACATTCAGGAACCGCCACATGGCAGTCCCAACTGGCTGAAAGTTGGCTTGACCTTGGGCACC ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 BTCIMNLL.1 CAT X63223 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGTGTTGGCTCCGAGGCCGCAGCATTCATGATGAACTTACTTCAGGTTGTGCGTGACCACTGGGTACATGTACTTGTCCCTATGGGATTTGTCTTTGGATATTATCTGGACAGAAAGAATGATGAAAAGCTAACTGCCTTCCGGAACAAGAGTCTGTTATATAAAAGGGAATTGAAA ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 BTCIMWFE.1 CAT X63222 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAGCCGGGTCACCTTTAAGGGACCTGGAAGGGAGTGTTTGGCCTCCGGAACGGCGTCGCGATGTGGTTCGAGGTTCTTCCCGGGATCGCCGTTATGGGCGTGTGCTTGTTCATCCCGGGAATGGCCACCGCGCGCATCCACAGGTTCAGTAACGGCGGCAAGGAAAAAAGGGTTGCCCATTATCCATATCAGTGGTATTTGATGGAAAGA ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 BTCNG4CGN.1 CAT X94707 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAATGTAGAATGCACTTCCACAAGAAGGGGGTTTTGGGGAGAGAATCCTGAACCATGAGAGCTGGACAGAAGGGCAGATGTCACAGTGTCCTGCTGGATAGTTATCTGGTGCCACAGAGCGAGGAGGACCAGAGTGAAGAAAGTGAAACCCAGGACCAGAGTGAAGTGGGCGGAGCCCAGGCCCAGGGCGAAGTGGGCGGCGCC ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 BTCPSF.1 CAT X83097 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCTCTCTGTGGCGCTGCGCAGGCGCAGGACCCGGAACCGTGGCGCGCGGCTTCCGCGTCCCGGCGGGCCGTGTTCGGCGCCGTACAGGTCCCCCATCAGCTGGCTCCAACTGCAAGCCCGAGTGCAGCGCCATGTACGCTGTGTACAAGCAGGCGCATCCGCCCACCGGCCTCGAGTTTTCCATGTACTGCAATTTCTTTAACAACAGCGAGCGCAACCTCGTGGTAGCCGGGACCTCGCAGCTCTACGTGTACCGCCTCAACCGGGACTCCGAGGCACCG ...................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTCPSFSU.1 CAT X75931 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAGATAATTGAGGTGAAATGGTCAGCAATCCCCGCCCAGAAGGAATTTATATGATATATAAAGAAGTCTTCCTTTGAATTCATTGTGTTTCATCCCAAATACAACTGAGATATCAAACTTTTTGGATTGTTGTTGTTAGACCGAAAAAAATGACATCTATTATCAAATTAACTACCCTTTCTGGGGTCCAAGAAGAATCTGCTCTTTGCTATCTTCTCCAAGTCGACGAGTTTAGATTTTTATTGGACTGTGGCTGGGATGAGCACTTTTCTATGGATATTATCGATTCCCTGAGGAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 BTCYLICA.1 CAT Z22779 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCAACCTATAGGCAGGGGAAATGTCTCTTCCAAGATTGTGTTTGGGAGAATTAATCAATGAAGACATCCACACCTGGAATTCTCTATGTCGGCAAGAAATAACCATCAAAACATATGATAATTCCATACCAATCAGTGAATCAAGCAAAAAAATACGGAATCAACAATAC ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 196 BTCYTB5.1 CAT X13617 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGGCGAGCCTAAGGCCCTAAAGGCAGCAGGAGAGCTGAGTTAAGAAATGGCCGAGGAGTCCAGCAAAGCCGTTAAGTACTACACCCTGGAAGAGATCCAGAAGCACAACAACAGCAAGAGCACCTGGCTGATCCTGCACTACAAAGTGTACGATTTGACCAAATTTTTGGAGGAGCATCCTGGTGGGGAGGAAGTC ..............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 203 BTEIF2A.1 CAT X53689 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus ATTCCCTCCCAGGCTGTTGCGCTCGGTTCTGCACGCGCCAAGCAAAGAACAGAATGCCAGGTCTAAGTTGTAGATTTTATCAACACAAATTTCCTGAGGTGGAAGATGTAGTGATGGTGAATGTAAGGTCCATTGCTGAAATGGGCGCTTATGTCAGCTTGCTGGAATACAACAACATCGAAGGCATGATTCTTCTGAGTGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 BTEPCOP.1 CAT X76980 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCCGCGGGTGAGAGGGCAGCGATATGGCTCCTCCGGCTCCTGGTCCGGCTTCTGGCGGCTCCGGGGAGGTGGACGAGCTGTTCGACGTGAAGAACGCCTTCTACATTGGCAGCTACCAGCAGTGCATCAACGAGGCGCAGCGGGTGAAGCCATCCAGCCCGGAGAGAGATGTG ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 BTFET.1 CAT X16577 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GTGAAGCCACCATGAAATCCTTCGTTCTGCTCTTTTGCCTGGCTCAGCTCTGGGGCTGCCACTCGATCCCGCTTGACCCGGTTGCAGGTTATAAGGAACCGGCCTGTGATGACCCAGACACAGAGCAAGCAGCCTTGGCTGCCGTGGACTACATCAACAAG ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 BTFIBGB.1 CAT X15556 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGCCCCGGGCCCGCCGACACCATGAGTTGGTCCTCGCACCCTCCGAGTGTAATCTTCTACATTCTTTCATTGCTTTCTTCAGCATGCCTGGCATATGTTGCTACCCGAGACAACTGCTGCATCTTAGATGAAAGATTTGGTAGTTATTGCCCAACTACCTGTGGAATTGCA .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 211 BTFIBMOD.1 CAT X16485 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAGGAGGCCAGACAGAGGGACGTGGTCACTCTCTGAAAGATTCAACTTCAAGAAACACAAAATGCAGTGGGCGTCCATCCTGCTGCTGGCAGGGCTCTGCTCCCTCTCCTGGGCCCAATATGAGGAAGACTCTCACTGGTGGTTTCAGTTCCTCCGCAACCAGCAGTCCACCTACGACGATCCCTATGACCCCTACCCCTATGAGCCTTAT .............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232 BTGUAKIN.1 CAT X67029 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAGTGGGGAGCAGGCAAGGATTACCACTGTCTCAGCTCAGCCAGTGCAGCCCCAAGCTGAGCACAGAGGCTACTCAGAAGGGATGTCAGGACCAAGGCCCGTTGTCCTGAGCGGACCCTCAGGGGCTGGGAAGAGCACCCTACTGAAGAAACTCCTGCAGGAACATGGCAGCATCTTTGGCTTCAGCGTGTCCCACACGACAAGGGACCCGAGGCCAGGAGAGGAGAACGGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 BTIDNADP.1 CAT X69432 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTCGGATCTCGCCTACCGGGTTCCTTCGTTCGCTCATCCGCCAGTCCGACCGCCCACCCGCTCGGGATGGCTGGTTACCTGCGAGTCGTACGCTCGCTCTGCAGAGCCTCTGGCTCCGGGTCGGCCTGGGCGCCACGAGCCTTGACAGCCCCCAACTTGCAAGAGCAGCCGCGGCGCCACTATGCCGACAAGAGGATCAAGGTGGCGAAGCCAGTG ..................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 274 BTIFNAR.1 CAT X68443 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCGGCGCTGGCCTTGGCGGGACGGCCTGGGTGCCTCAGTCTCCGTCGCGCCGCCGCGCGGTGCCTGCCGCGGTAGTGGGTGGCCGAAAGATGTGACTGGAGGGCTACCGGCGGCCCGCGGACGATGCTCGCTCTCCTGGGCGCGACGACCCTGATGCTGGTCGCTGGGAGATGGGTGCTGCCCGCCGCCTCAGGGGAAGCAAATCTGAAGCCTGAAAATGTCGAGATCCACATCATTGATGACAATTTTTTCCTGAAGTGGAACAGCAGCAGT ............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 192 BTINT6MR.1 CAT X57317 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCAGGAACGAAAGAGAGCTCCATCTGCCCTCCAGGAACAGCTATGAACTCCCGCTTCACAAGCGCCTTCACTCCATTCGCTGTCTCCCTGGGGCTGCTCCTGGTGATGACTTCTGCTTTCCCTACCCCGGGTCCCCTGGGAGAAGATTTCAAAAATGACACCACCCCAGGCAGACTACTTCTGACCACTCCA ..........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 175 BTKER6B.1 CAT X02870 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus ACTCCCTGAGCTAAACAGCATCACCATGTCTGTTCGATACAGCTCAAGCAAGCAATACTCTTCCTCCCGCAGTGGAGGTGGAGGAGGAGGAGGATCATCCCTCAGAATTTCGAGCAGCAAAGGCTCTCTTGGTGGAGGATATAGCTCAGGGGGGTTCAGTGGTGGCTCTTTTAGC MMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTLACTA.1 CAT X06366 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAATGTTTCTTTGTTGGTTTTACTGGCCTCTCTTGTCATCCTCTTCCTGGATGTAAGGCTTGATGCCAGGGCCCCTAAGGCTTTTTCCACAAATAAAAGGAGGTGAGCAGTGTGGTGACCCCATTTCAGAATCTTGGGGGGTCACCAAAATGATGTCCTTTGTCTCTCTGCTCCTAGTAGGCATCCTATTCCATGCCACCCAGGCTGAACAGTTAACAAAATGTGAGGTGTTCCGGGAGCTGAAAGACTTGAAGGGCTACGGAGGTGTCAGTTTGCCTGAATGGGTCTGTACCGCGTTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 BTMETPROA.1 CAT Z21961 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGCGGCGGCACGGAAGATGGTGTTGCTGAGAGTGTTAATTCTGCTCCTCTCCTGGGTTGCGGGGCTGGGAGGTCAGTATGGAAATCCTTTAAATAAATACATTAGACATTATGAAGGATTATCATATGATGTGGATTCATTACACCAAAAACACCAGCGTGCCAAA ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 BTMLRQSMR.1 CAT X64897 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGTGAGTGCTTAACCTCCGGTCTTGCGGCTTAGCTTTTCTCTCGGTTTGGACTCGAGGCCTCTGTTGCAACCATGCTCCGCCAGATCATCGGTCAGGCCAAGAGGCATCCTAGCTTGATCCCCCTCTTCATATTTATTGGAGCAGGAGGGACTGGAGCAGCACTGTATGTCACGCGCCTGGCATTGTTCAATCCCGATGTCAGTTGGGACAGAAAGAATAAC ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTNACAKEX.1 CAT X66481 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CAGATGTCCAGGTTTGAAGGTTTGTGGTTACCCTCTGGCTGGACTTCATGGAGGAATCTTCTCTGATATCTAATCTGAATCCCAGAGCATCCCCCATTTTTCTGTGGACAAAATGAGAGGCCTTCTATAGCCAGGGATAACTGGCCATCATGGGGAAACTGATCAGGATGGGGGCACAGGAGAGGCGGTCACTCTGGCCAAAGCGACTTCATTGGAGTCGCCCCCTCTTCCTATTGGGAATGTTGATCATAGGTTCCACCTACCAGTACCTGACGAGCCCTCAGGGCCTCCCCACACTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 BTNADHDUB.1 CAT X68647 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCAAGTGGGAACGGCGTCACAATGATGACTGGACGGCAGGGCCGAGCTACCTTCCAGTTCCTGCCTGATGAGGCCCGGAGCCTGCCGCCGCCGAAACTGACGGACCCGCGGCTGGCCTTCGTAGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACGCGATCCGGCGG .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTOBCAM.1 CAT X12672 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCCTGGACTCCGCTTCTCCTTACCCCCCTCTCCGCTTCTGGCTGGTTCCAGCCCCTGCCGCCCTCCCCGCGCGGCTGCCCGAGACCCGCTCGCGTGCGTGCGAGGACCGAGCCGCCGCCGGAGTTCTGGGAAGTTGTGGCTGTCGAGGATGGGGGTCTGTGGGTCCCTGTTCCAGCCCTGGAAGTGCCTCGTGGTCGTGTCTCTCAGGCTGCTGTTCCTTGTACCCACAGGAGTGCCCGTGCGCAGCGGAGATGCCACCTTTCCCAAGGCGATGGACAACGTGACGGTCCGGCAGGGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247 BTODFPC.1 CAT X69515 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTTTTAAAAGAAACCTCTGAGAAGAGCTTAGAACAATTTTTTCCCCCCAGAGTGCCATTTCCCAAAGGTACTCACAGAACAATAAGGTGTGACTGTAATGGCTGCACTGAGTTGTCTTTTGGACAGTGTTAGAAGGGACATCAAGAAGGTGGACAGAGAACTAAGGCAGTTGAGATGCATCGACGAGCTCAGCGCACGATGCCTGTGCGACTTATACATGCACCCCTATTGCTGCTGCGACCTGCAC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTOSTR.1 CAT X56395 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TATTAACAAAGGACTTCTCAGCACCGTTTGAGTCTCGATATTGGTCAGCCCAATTTGGTGATCTTGAAACCTGAGTGGGGATTGAAGAAAACTGAATTGGATTACCCAGTTGCTTTCACAGGATCATCTGGACAGTGTACCACTCCACGATGAGTTCTTCCAAACCATCCTTTTCAGATTACTTTGGCAAACTTGGTGGAATACCAATGTATAAAAAATTTATCGAGCAGTTTCATAACGTGGAGGAATTTGAGGCAAGACCAGATGACCTTGTCATTGTCACCTATCCCAAATCTGGT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 BTPAPOLY.1 CAT X61585 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCGGCGCAGGAGACGATGCCGTTTCCAGTTACAACACAGGGATCACAGCAAACACAGCCGCCACAGAAGCACTATGGCATTACTTCTCCCATCAGCTTAGCAGCCCCCAAGGAGACTGACTGCCTGCTCACACAGAAGCTGGTGGAGACTCTGAAGCCCTTCGGG .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTPCK1A.1 CAT X54962 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAGGGGAGAGCGGCCGCCGCCGTGCCGTTCCACCCCTGTTTTGAAGAAAATAGGTCTGAAACAAGGTCTTACTCCCCAGCTGCCTCTCAACATAGTGACTACCATCTCTCCAGATACCAAGTCCAGCTTTGTCCGCCAACCTGTCTGACATGTCGGGACCCGTGCCAAGCAGAGCCAGAGTTTACACAGATGTTAATACACACAGACCCCGAGAGTACTGGGATTACGAGTCACATGTGGTGGAATGGGGAAATCAAGATGACTACCAGCTGGTTAGAAAATTAGGTCGGGGTAAATAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 BTPKB.1 CAT X61036 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGCCCGCTGCCGTGGGGCGGAGGGGTCTGAGAGGCACGAGAGTGAGGTCTGGGCCGTGTTGGGCCCGGGAGCCACAGCAGCATGAACGACGTGGCCATCGTGAAGGAGGGCTGGCTGCACAAGCGAGGTGAGTACATCAAGACGTGGCGGCCGCGTTACTTCCTCCTGAAGAACGATGGCACGTTCATTGGCTACAAGGAGCGGCCGCAGGACCTGGAGCAGCGTGAGTCG .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 295 BTPLAKOPH.1 CAT Z37975 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGCCCAGAGCCTTCGCGCGCGCGGACCGTCGCTCTATGGGCACAGGGAGCCGCTGAGCGCGAGAAGAGCCCGCTTCCGCCGCCGCCCGCACCTCGCGCCGCTCGGCTCGCTCTCCAGGCCCGCGCCCCGCCCGCGCCCGGCCGCCATGAACCACTCGCCGCTCAAGACCGCCTTGGCCTACGAATGCTTCCAGGACCAGGACAACTCGACGCTGGCTCTGCCGTCCGACCAGAAGATGAAGACCGGCACGTCGGGCCGGCAGCGCGTGCAGGAACAGGTGATGATGACCGTCAAG .................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 185 BTPROTS.1 CAT X12891 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCGCCGCTTCTGCCCAAGCCTCCGCCCGTTTCGCCATGAGGGTCCTAGGTGGGCGCACCGGGACGCTGCTGGCATGCCTCGCCCTAGTGCTTCCCGTCTTGGAGGCTAACTTTTTGTCGAGGCAACATGCTTCACAAGTCCTGATTAGGAGACGCCGTGCAAATACATTGCTTGAAGAAACGAAA ...................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTPTH5R.1 CAT X12515 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AAGCCCTTTAAAATTATGTACAGAGAGCCATATTCTCAAAATATTTTTAACACTTCCTTTAAGAAAAGCACTATATATATTTTTTTGGAACAAGATCAGGAATGATACAGACTGGTCCAATATGGCTTGTAAAGTAAGCATAATGTAATATGATTCATTATAATCCTCATAATAATTGTGCCAATGTTATGGCTGTAAGAAATATACTTATTTTCAATTTCACTTTCAAATACAATAAGATGATGTGGTGGTGGTTTAGTGCTAAGTCGTGTCCAACTCTTGTGACCCCATGGACTGTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTSVSP109.1 CAT Z33621 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAGATAAACTTGAACTTCATGCTCTCAGGCTGGGGAATGATCAAGCATCATCCAGGTGAGCTTGATTCTTATCAGGTTGAAGGATGTTGAGGTCACCGGTTACAAAAGGAGCAGATGGATGCTGGTCAGTCTCAGGAGAGCAAGCTACCATGGCACTGCAGTTGGGGCTCTTTCTGATTTGGGCTGGCGTGTCTGTGTTTCTACAACTGGACCCTGTGAATGGAGATCAGGACGAAGGTGTTTCTACTGAACCTACCCAAGACGGTCCTGCTGAATTACCTGAAGACGAAGAATGCGTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 BTTDTR.1 CAT X04122 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTCTTCTGGAGATACCACTTGATGGCACAGCAGAGGCAGCATCAGCGTCTTCCCATGGATCCGCTGTGCACAGCCTCCTCAGGCCCTCGGAAGAAGAGACCCAGGCAGGTGGGTGCCTCAATGGCCTCCCCTCCTCATGACATCAAGTTTCAAAATTTGGTCCTCTTCATT .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTTNFG.2 CAT Z14137 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGAGACAAGCAGCTGCAGAACCCCCTGGAGATAACCTCCCAGACAACACACCCCCGAGAGACAGCCAGGCAACTTGCTCTCTCTCACATACCCTGCCACAAGGCTCTCCTGTCTCCCGTCTGGACTTGAACCCTTCTGAAAAAGACACCATGAGCACCAAAAGCATGATCCGGGATGTGGAGCTGGCGGAGGAGGTGCTCTCCGAGAAAGCAGGGGGCCCCCAGGGCTCCAGAAGTTGCTTGTGCCTCAGCCTCTTCTCCTTCCTCCTGGTTGCAGGAGCCACCACGCTCTTCTGCCTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 BTU02295.1 CAT U02295 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTCAGGTACTTTATCTATCAGATCTAATCCCTTGAATCTTTTGTAATTCACTGTATGTCCATGCGAGTCTGCGTCTGCCCACCAGCACAGGCCTCTCGCCTTCGCTGCTCCATCTTCACCACTGGTGGACACAGCAACTGTTCTCCTGGATGTTGATATTGCCACGCTTATGGTCGACAACGGGCTCCGGCATGTGCAAAGTCAGCTTCGTGGGTGACGATGCTCCCCAGGCTGTCTTCCCCTCCATTGTGGGGTGCCCCTGGCACCAGGGCATGATGGTGGGCATGGGCGAGAAGGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240 BTU03872.1 CAT U03872 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus ACAGTCTGATCTGCCAAGTGCATTATACCAATATCTCATTAATTCTCCCCAAACCTCTGAACGGAAATTGTTCTTCCCATAATGGAGAAGATGGCGATGAAGATGTTGGTGATATTTGTCCTTGGAATGAACCACTGGACTTGTACAGGTTTCCCGGTGTATGACTATGACCCGGCTTCCCTGAAGGAGGCTCTCAGCGCCTCTGTGGCAAAAGTGAATTCCCAGTCACTGAGCCCCTAT ..........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248 BTU04706.1 CAT U04706 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAATTCGCTTCGCTTGGTGCCTTTCGCTCGGGCGCTGTCGAGGGGGGCTCGGGGAACATTTAGCGGGGCTTCACGGTCCCTGAGCCCTCGGAAGTGCGATGAGGTCGGTTAGCTACGTACAGCGCGTAGCCCTAGAGTTCAGCGGGAGCCTCTTCCCACACGCCATTTGCCTCGGAGACGTTGACAACGACACGTTAAATGAACTGGTGGTGGGGGACACCAGCGGAAAGCTGTCAGTGTATAAGAAT ..................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 298 BTU05775.1 CAT U05775 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCCGGGCCTCCCTACTCTCAGGAAGGCAGGCGCTCACCTCCTCAAGTTCTCGATCTCGGCCGGGATGCTCTGAAGCTGGTTGCCGCCGAGGCTGAGGGTCTGCAGCGGCGCAGTCCAGCAGCGAGGTGGGAGTGGCTTCGTGGGCACCATGGGGCCGTGCTCTAGGCTGTTCGTCTGCTTTCTGCTCTGGGGAAGCACAGAGCTCTGCAGCCCCCAGCCCTTCTGGGATGATGAAACCGAGCGCTTCAGGCCATCAAAGCCGCCCGCCGTGATGGTGGAGTGTCAGGAGGCCCAGCTG ....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 BTU07980.1 CAT U07980 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GACTACTGCCGCCGCTGTCGCCGGGGTGAGAGGAGTGGACGCGATGGCAGGGCCCGCGTGGATCTCCAAGGTCTCTCGGCTGCTGGGGGCATTCCACAACCAAAAACAGGTGACCAGAGGTTTTGCTGGTGGTGTTAAGACAGTAACTTTAATTCCAGGAGATGGAATTGGCCCAGAAATTTCTGCTGCAGTT ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 BTU09237.1 CAT U09237 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCCTTGCAGCTGGTGGACAGTAACGGGGACCTAAGTGCGGGGAGCGGCGGGGGCGGCGGCAAACAGAGAGTGAACGCCGGGGCGGCAGCGGCCGGAGTCCCGCCCGGCAGCCTCAGGACCGCGCCAGCACCATGGACAGCTCAGGTGCCTCATCTCCAGACATGGAGCCCAGCTATGGCGGAGGTCTTTTTGACATGGTGAAAGGAGGGGCAGGGAGGCTCTTTAGCAACCTAAAGGACAACTTGAAAGACACTCTCAAAGACACGTCTTCCAGAGTTATA ...................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 262 BTU09859.1 CAT U09859 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGATTTGTTGTTTGACAAAACTTTGAAAACTGGAGAGTTTCTGCTCTTCAACTGCTGCAAGCTTCTGTGCTCTTCCAGAGTCCTTAGGGTAGCAAACCTTCAAAAACCAAAAATGGGGTCAAAGCGAAGTGTACCATCAAGGCACCGTTCTCTCACCACCTATGAAGTCATGTTTGCCGTTCTCTTTGTCATATTGGTGGCGCTCTGTGCTGGATTAATTGCCGTGTCCTGGCTGTCAATCCAGGGATCAGTAAAAGATGCA ................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 283 BTU25688.1 CAT U25688 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CTAAAAAGCCATCGTCCTCCACTTCCTGAGGAGGCAGCAGCAGAACAAAGCCAGCAGAGACTCCTTTCCTCTTCTTCATCCAGTCACAGCTGCCTCAGCCTCTGCTCCGGGCACCATCCTGGGGAAGGACAAGATGAAGTGGACAGCACATGTTATTGTGGCCATCTTGCAGGCACAGTTCCCAATTACAGCGGCACAGAGCTTCGGTCTGCTCGATCCTAAACTCTGCTACCTGCTGGATGGGATCCTCTTCATCTACGGCGTTATTGTCACTGCCCTGTTT .....................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 BTU26024.1 CAT U26024 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCGAGCGGCCGCCCGGGCAGTTGTGCTCTGTAGTGTTGGAATCTTGTTGCTTGTCGGCCTGTGCGCGCGTGCGCGGACATGGCCTCAAACGACTATACCCAACAAGCAACCCAAAGCTACGGGGCCTACCCAACTCAGCCTGGGCAGGGCTACTCCCAGCAGAGCAATCAACCCTACGGGCAACAGAGTTACGGTGGCTACGGCCAGTCTACGGACACTTCGGGCTAT ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 265 BTU27341.1 CAT U27341 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTGGACCGTATCCTCGTGCTAGGCTGTGGAAACAGTGCCCTGAGCTACGAGCTATTCCTTGGGGGGCTTCCCTGATGTGACCAGTGTGGACTACTCATCAGTAGTGGTGGCTGCCATGAGGGCTCGGTATGCCCACGTGCCCACGCTGCGATGGGAGACCATGGATGTGCGGGCACTGGGCTTCCCTAGTGGCTCTTTCGACGTGGTGCTTGAGAAGGGCACACTGGATGCCCTGTTGACTGGTGAACAGGATCCCTGGACTGTG ...................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 211 BTU34247.1 CAT U34247 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CCGCGAGCAGTTCACCGCGGCGTCCGGAAGGTTAAGCTGAAACGGCAGCTCAGCTTCGGAGATGTTACCGTCCAAATTGCATGCGCTTTTCTGCCTCTGCACCTGCCTTGCACTGGTTTATCCTTTTGACTGGCAAGACCTGAATCCAGTTGCCTATATTGAATCACCAGCATGGGTCAGTAAGATACAAGCTCTGATGGCTGCTGCAAAC .............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252 BTU35363.1 CAT U35363 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TCGCCGCCCGCTCGCTTCCCGGTGCCAAAGTGGGTGTTGCTGAAATTCCTCTCTCTCCTCTCCCGTAATAAGGGGGCTGAACTATCCCTCCGAGGAGGGGGCATGGTGTGGATAAAAGAGGCGAAAAATCAGGGGGAGGTTTCCAAAAATAAAACCCTCCAGTTCTCCTTCCGAAGGCTACAGCGACCGGGAGAAGGCGCGAAGGTGCAACAGCGGTGCGCGCCCAGCGGGAGACGCAGCGCGGCCTCCAGG ......................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253 BTU35642.1 CAT U35642 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus CGCAGCCCCAGTCTGTAGCTGCCTCGAGCAGGGAGCTGGTGGCTCTTCCATCCCCAGACCAGCCAAGCCTGTGAGTGACACCCCAGACAGAGGAACCAGAGCCATGCGGAGTCTCAGCGGACTGCTGTTGTTACTGACTGCCTGCCTGGCAGTAAACGCCAGCTCCGTGCCCACATTGCCCGATGACATTCAAGTGCAGGAGAACTTCGACCTGTCTAGGATCTATGGGAAGTGGTTCAATGTGGCCGTGGGC .......................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 BTU36445.1 CAT U36445 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus ATTGTAACATGCGCAAAAATGGTGCCTCGTCTGACTGTCATTCTGTTCCTAACTTTGCACCTCCTGCCTGGAATGAAAAGTTCAATGGTAAATTTGATTAACAATGGATATGATGGCATTGTCATTGCAATTAACCCTAGTGTGCCAGAAGATGAAAAACTCATTCAA ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 214 BTU37150.1 CAT U37150 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCCCACTCCGCAGTGGCGTCTCCGCTCCCGACCGCCCGGCGGTCCCTTGGCCAGCGGCCCGTCCATGCTCTCGGTCACCAGGAGGGCCCTCCAGCTCTTTCACAGCCTCTTCCCCATCCCGAGAATGGGTGACTCCGCCGCCAAGATCGTCAGTCCCCAGGAAGCCTTGCCGGGCCGGAAGGAGCCCCTCGTCGTAGCGGCCAAACATCATGTC ................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 214 BTU37282.1 CAT U37282 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAAGGAGAGAGACACATTCAACAACCAAAGGGCTCGGTGGAAAGAGCAGAGAACCATCAACAACATGACGTTCTTTGGACCCAAAGTGCTCCTGCTTCTCACCGCCCTCATCATGTCCTCTGGCCGGACACCCCTAGGGGTCAGCGGACAGCGAGGAGATGATGTGACCACAGTGACTTCAGAAACATTCACAGAAGATCCTAATCTGGTGAAT ................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 BTU48236.1 CAT U48236 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus AGAGCGACTCCGGAGCTGCCATGGCTGCTGCCTTTACATCCTCCCCTGTCGTTTCACAGCCCCAGTTCACAGCCATGAACGAACAACAGTGCTTCTCCAATGAGTCCATCGCCTTCTTTTATAACCGGAGTGGGAAATATCTTGCCACAGAATGGAACACAGTCACCAAG ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240 BTU51437.1 CAT U51437 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GTGGGGTTTCCTTATGCTACTGCAAGGGAGGGCAGGAGGAAGCTGGAGACCCCATTCCTGCCTTAGCCACTGTCTTGCTCAGAGTCCGTGATGGCTTGGTCCTTGGTGTTTCTCGGTGTCGTCTTGCTGTCTGCCTTCCCAGGGCCTAGTGCCGGGGGCCGCCCCATGCCCAAGCTGGCTGACCGGAAGATGTGTGCCGATGAGGAATGCAGCCACCCCATCTCCGTGGCTGTGGCCCTT ..........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 BTU52687.1 CAT U52687 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGTCAGAGATCGCCCGGAGCTGGCAGAGGTGTGAATGAGCGGAGGAGACAAGCGCACTCCGCTCCAAGTGCTCACCCCGGGATGGCGGCGGCTCAGGGACCTGTGGCCCCCTCCTCCCTAGAACAGAATGGTGCTGTGCCCAGCGAGGCCACCAAGAAGGACCAGAACCTCAAACGGGGCAACTGGGGCAACCAGATCGAGTTTGTACTGACGAGCGTGGGCTATGCCGTG .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 BTU5MPSM.1 CAT X65125 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus TTTGGAGTTTGGAGTGAACTGAGAGAGCGGGACCATGGCGGCGGCTGATGCCCTTTTGGGGTCATTGGTAACGGGTCTGTACGATGTGCAGGCTTTTAAGTTTGGGAACTTCGTGCTGAAGAGTGGGCTCTCTTCCCCCGTGTACATCGATCTGCGGGGCATCATATCTCGACCGAGTATTCTG ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 211 BTUROPL2.1 CAT Z29378 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCGTGCAGAGAGCCGACACAGTACCAGGAGGAGGAGGAGAGGCTTGGGGGAAATCCTGAAGATGGCCAAAGACGACTCCACTGTTCGTTGCTTCCAGGGCCTGCTGATTTTTGGAAATGTGATTATCGGTATGTGCAGCATCGCCCTGATGGCAGAGTGCATCTTCTTTGTATCAGACCAAAACAGCCTCTACCCACTGCTTGAAGCCACC .............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 BTZCOP.1 CAT X75935 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus ATTGACGTCGGCACCAGCTGCGGGGCAAGATGGAGGCGCTGATTTTGCAACCCTCCCTGTATACCGTCAAAGCCATCCTGATTCTGGACAATGATGGAGATCGACTTTTTGCCAAGTACTATGACGACACCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAACATTTTCAAC .............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 268 D12816.1 CAT D12816 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GACGGAGAGGGTGGCCCGGCCGTGGATGATCAGATAGCTTCTACCTCCCGCCGCCCATCCCTGGCCCCAACCGGCACGGAGCAGACGGCGGCAGCAGCAGCAGCAGGCGAGGAGGAAGATGGCGGGACGGCTGCCGGCCTGTGTGGTGGACTGTGGCACGGGGTATACAAAATTAGGATATGCTGGAAATACGGAACCACAGTTTATCATCCCTTCCTGTATTGCTATTAAAGAGTCAGCAAAAGTGGGAGATCAAGCTCAAAGGAGG ......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 176 MIBTCIB22.1 CAT X64836 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GGGCCGCTGAAGGTGAGCCGGCCATCATGGCATTTTTGTCGTCGGGGGCCTATCTGACCCACCAGCAGAAGGTGCTGCGGCTTTATAAGCGGGCGCTGCGACACCTGGAATCATGGTGCATCCACAGGGATAAATACCGGTACTTTGCTTGCTTGTTGAGAGCCCGGTTTGATGAA ..........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 MIBTXX.1 CAT V00654 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Mitochondrion Bos taurus TCAAGCGCCTTAAGACAACCAATGATAACATCTCAACTGACAACACAAAACCCTGCCCTAGAACAGGGCTTAGTTAAGGTGGCAGAGCCCGGTAATTGCATAAAACTTAAACTTTTATATCCAGAGATTCAAATCCTCTCCTTAACAAAATGTTCATAATTAACATCTTAATACTAATTATTCCCATCCTATTGGCCGTAGCATTCCTTACGTTAGTGGAACGAAAAGTTCTAGGCTATATACAACTCCGAAAAGGTCCAAATGTCGTAGGTCCATATGGCCTACTTCAACCCATCGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 MIBTXX.3 CAT V00654 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Mitochondrion Bos taurus AAAAAGGCGGGAGAAGCCCCGGCAGAATTGAAGCTGCTTCTCTGAATTTGCAATTCAACGTGTAAATTCACCACAGGGCTTGGTAAAAAGAGGAGTCAAACCTCTATCTTTAGATTTACAGTCTAATGCTTTGCTCAGCCATTTTACCCATGTTCATTAACCGCTGACTATTCTCAACCAACCATAAAGATATTGGTACCCTTTATCTACTATTTGGTGCTTGGGCCGGTATAGTAGGAACAGCTCTAAGCCTTCTAATTCGCGCTGAATTAGGCCAACCCGGAACTCTGCTCGGAGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 MTBTCPN10.1 CAT X69556 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GCCTGTGGCGTGAGAGCAGGGTACGAACTGCGGCAGCCGGAGTCATGGCAGGACAGGCATTTAGAAAGTTTCTTCCCCTCTTTGACCGAGTATTAGTTGAAAGAAGTGCGGCCGAAACTGTAACCAAAGGAGGGATTATGCTTCCAGAAAAATCACAAGGAAAAGTATTGCAAGCAACGGTGGTAGCTGTTGGA ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 MTBTHAKN.1 CAT Z49931 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos. Bos taurus GAAGCGACCTCATCTTTGTCAGTGCACAAAATGGCGCCTTACAGCCTACTGGTGTCCCGGCTGCAGAAAGCCCTGGGTGCGCGGCAGTACCATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGTGGCCATGAGCCACTTTGAACCCAATGAGTACATCCGCTATGACCTGCTCGAGAAG ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 270 CHK130KDB.1 CAT D37986 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CTTCCATCTGGGTGGGTGCGTGAGCGAGGGCGAGCGCGGGCCGCGGTGCGCTGTGGGATACGGCGGTATATAGTCTATCCTCGGCGCGGCGATAGCGAGGGGGTCAGGCGGGAGCGGGGCATGAAGATGGCGGACGCCAAGCAGAAGCGGAACGAGCAGCTGAAGCGCTGGATCGGCTCCGAGACCGACCTGGAGCCGCCCGTGGTCAAGCGCAAAAAGACCAAGGTGAAGTTCGACGACGGCGCCGTCTTCCTGGCCGCCTGCTCCAGC ........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 CHKACHR01.1 CAT K02903 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CATGGGGGACATGGCAGTGCTGCTGGCCTTGTTTGGGGCACTGGTGCTGTCGGGTGGGCTCTGCGTTAACCAGGAGGAGCGGCTCATCCATCACCTCTTTGAGGAGAGAGGCTACAACAAGGAGGTGCGCCCCGTTGCCTCTGCTGATGAGGTTGTGGAT ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKACHRAA.1 CAT J05218 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGAAGGAGCTGTTTGCTGCCAGAGACACAGGTGAGCACTAAGAGCCATGGCATGGCCCTTTCCCAGGGCTCACAGCCACGGCTGGACAGACGCACGTACCGCCAGGTGTGACGTACTTCCTTTCTGTCTTCATTCTCCTTGCAGACCCCATGCACAACCTCTCCGCGCAGCCCTGGCAGGCGAAGATGGCCAACCTGACCTATGACAACGTCACCCTCAGCAACCGCTCTGAGGTGGCCATCCAGCCCCCCACCAACTACAAGACGGTGGAGCTGGTTTTCATCGCCACGGTCACCGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 CHKADLYS.1 CAT M37901 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACCCCCTGCGCCGAGGAGGACCCGCTGGCCCGCTACCGCTCTCCGCTGGTGTCGCGGTACGCCAGCGCCGAGATGGGCTTCAACTTCAGCGAGAGGAAGAAGTTCGGCACCTGGCGCCGCCTCTGGCTCTACCTCGCCCAGGCCGAGAAGTCACTTGGGCTTCCCATCACAGATGAGCAGATAAAGGAGATGGAAGCAAATCTGGACAACATTGACTTCAAG ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 CHKAGRIN.1 CAT M94271 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGACCCCTTAATCTGTGACAACCAAGTGTCGACCGGGGACACACGGATATCTTTGTCAACCCAGCCCCTCAGTACATGTGGCCTGCCCACCGCAACGAGCTGATGCTCAACTCCAGCCTGATGCGGATCACGCTGCGCAACCTGGAGGAGGTGGAGCACTGCGTGGAAGAACATAGGAAGCTTCTTGCTGACAAGCCCAATAGCTATTTTACCCAGACCCCGCCG ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 207 CHKAKM.1 CAT M12153 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TATTCTGCACCGCCCCCCCCGCAGCCTGAAGTGCTCCTCCACCCAGACAGCAGCAGCATGTCGACAGAAAAACTGAAGCACCACAAGATCATCTTTGTGGTGGGTGGCCCCGGCTCAGGGAAGGGGACGCAATGCGAGAAGATTGTGCACAAGTATGGGTACACTCACCTCTCCACTGGGGACCTGCTCCGGGCAGAGGTCAGCTCG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKALMTP.1 CAT M55076 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCCAGAAGTGAAGAAAACCTCCTGGACAGAAGAAGGAAGATAGAATTATTTACCAGGCACACAAGAGACTGGGAAACAGATGGGCAGAAATTGCAAAGTTGCTGCCTGGACGGACTGATAACGCTGTCAAGAACCACTGGAATTCCACCATGCGCCGGAAGGTCGAGCAGGAGGGTTACCCGCAGGAGTCCTCCAAAGCCGGCCCGCCCTCGGCAACCACCGGCTTCCAGAAGAGCAGCCATCTGATGGCCTTTGCCCACAACCCACCTGCAGGCCCGCTCCCGGGGGCCGGCCAGGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKATPABS.1 CAT L08047 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAATTCGGCACGAGAGGCAGTGATCTCTTCAACCTTTAGTGGAGGGGAAGGTATAAAAACCAAAGCAGTCTGCTTGGGCAACTCTTTGAGCCCCTGTTGAATTTCTTCATTTCCGAGGAAGACGCTTTTTGGGGAAATTTTGTGGCAAAATGGCAACTTTAAATGAAAAGAAGACCTGCAGTGAACGGATGGAAAATTTCCGCCGTTTTGTCTGGAATCCAGAAACTAAGCTGTTTATGGGAAGGACCTTGATTAACTGGGTGTGGATCAGCCTGTACTACCTGGCCTTCTACGTGGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 CHKBGAD.1 CAT M27666 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AAAGAAAGCGGCACAGAGCAGAGAGCTGAGTGAGTCCTTCCAGCCCCTTCCACCACCAAAGTCCCTTTAATGGAACTGATAGAAGACTGCAGAGTGCTGGGTTTATGCCATGTGCTGGGACCATGGGATACGTTGAGGCCTTGGAATGAGTTGGGGTTGTGGGATGTACTGGGCTCGTGGGACGTGTTAATCCTGACTAATTCACATGCAAAAATTGTC .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 269 CHKC3A15E.1 CAT K01481 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCTGTACATGGCCCGGTGCTGGAAGGGCAGGGAACAACCGATGTTGTTAATTTGAATAGATTTTCCTTTCCCCCCCATTTTTCTTTTTGCACAGAGAGTCTCATGTCTAATATTTATACATGATGAGCTTTGTGCAAAAAGTAAGTTTGGTGTTCATTCTTGCCGTGTTTCAACCCTCTGTTATTTTGGCACAACAGGACGCCCTAGGAGGATGTACCCATCTTGGGCAGGAATATGCTGACAGGGATGTTTGGAAACCAGAGCCATGC .......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 255 CHKC6A1A.1 CAT J04598 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CTTCCTTCCCCGGGCCCAAGCGCTGAAACCACCCCCAGACCCGGACCCGGCCTCTCCCTCCTTCCTCCCTTCGCTGCAGCTCGATGTGAATCTGAGCCCAGCGACATGGGGCTGCACGACTCCTTCTTGGCGCTGCTGCTTCTTCTGGGGGGTGCCTGGGCTCAGCAGGCTGAAATCAACGCCCGTGTCCTCAGGGCTCAGGACTGCCCCGTGGACCTGTTCTTTGTGCTGGACACCTCTGAAAGTGTCGCCCTG .........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKC7B.1 CAT D42150 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGCAGTGGTGACCTCTCCCAATCAACTACTCCACAAATTATTATCTCTGGACTCCCAGCTGACACCCTGCCGGAGGCGAGAGCTGCAGAGACAACTGGAATTGTGCCCGTTCTCATCAAGGTTCTTTCTTACACGGGAGGAAAAAAAAGATGAAGTTGGGCAAAGTGGAGTTCTGCCATTTGTTGCAGATAATAGCTCTTTTCCTGTGTCTTTCTGGGATGAATCAAGCTGAACCCTCGAGGTCCAGGTCAAAGCCCTACTTTCAGTCTGGGAGGACGAGAACCAAACGCAGCTGGGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 205 CHKCEK1.1 CAT M24637 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGCCCCATGGAGGGGCGGTTGAGCGCAGTCGCTGAGCAGTAGCCGCAGCAGTGGGATGTTTACCTGGAGGTGCCTCATCCTTTGGGCTGTGCTGGTCACAGCCACGCTGTCTGCTGCCAGACCGGCCCCCACGCTGCCCGACCAAGCTCTGCCCAAAGCGAACATCGAGGTGGAGTCCCACTCGGCGCACCCCGGCGATCTCCTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 CHKCKMX.1 CAT M10012 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CACGGGGGGCTGCTCCGCCGCTGTTCCGTCTCGTTTGAACGCAGCCCCCCCCGCCGCCGGCCATGCCGTTCAGCAGCACCCACAACAAACACAAGCTGAAGTTCTCAGCCGAGGAGGAATTCCCGGACCTCTCGAAGCACAACAACCACATGGCCAAAGTCCTCACCCCGGAGCTCTACAAACGCCTCCGGGATAAGGAGACCCCGAGCGGA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKCOLA29.1 CAT M25984 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGGTTTAAACTACCTCATACACTAAACCAAGTGTGATCCACATCCTTTGTAGGCATTTCTCCATATCATATGAGTTACTTTCAGTTCCACTCAGAATATAGTGGTGCTAATTTCATATTCCAGAGTGTGTTTCCAATACTTGAATTTTGATGGTGCTAGCAGCAGTTAAAGTATTACTTCTCTGTTTCTTTGAAATCTATCTCATCCCCAGCTTGGGCATGTGGATCATTTTTCCTCATCTTTGTCTTCTTCCTCCAAAATCGGTGTTTCTGCTTCCAAATCTCATTTTCATCTTCTCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKCOLAVI.1 CAT M24282 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CTGAGCGGCACCGGCGCGGCCGCAGAAAGGTGCTTCGGAAGGGGAGAACCCCGGGATAAGCGATATATTTTGGGGGTTCGCTCAGGGGTCTCACATCAGGTTCTTTGAAACAAGGAGAACAAAAAGGGAAACTGAAACAAAAGAACACAATGAGGAAGCATCGGCATTTGCCCCTTGCGGCAATACTTGGCCTCCTGCTCTCAGGCTTTTGCTCAGTTGGTGCCCAGCAGCAAGCAGCTGTCAGAAACGTTGCCGTGGCTGATATAATATTTCTAGTGGATTCCTCTTGGAGCATTGGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 296 CHKCOLCARB.1 CAT M28659 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCCCTCCCCGCTGACTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACTCTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAAACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCAGCTACCTACCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGATTGGC ..................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 CHKCRYD.2 CAT M10806 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGAGAGACTAGCCGGGCTGAGCTGCTGAGACGGTTGCACTTGGAGTGCTGTGCAACGAGCAAACGTCTGAAATGGCATCTGAGGGAGATAAACTCTGGGGGGGAAGATTCAGTGGAAGCACAGATCCCATCATGGAGATGCTCAACTCTTCCATTGCCTGTGATCAGAGACTGTCTGAAGTTGATATCCAGGGGAGCATGGCTTATGCCAAAGCACTGGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKCSKI.1 CAT M28517 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TGCTAAACCTGAGTGGGAAGGGGGGGGAAAAAAAAAAGGGTGGGTTGTTGTTTTGTTTAAAAAAAGAAAAAATCCCTTAAGTGGATTTGTACCAGCGTGGAAGATAACTGGGGATTTTTGTTGTTTGTTTTGGGAATAGAAACTAAAAAATGGAGACTGTAAGTAGAAGCAGCTTCCAGCCTCATCCAGGACTGCAGAAGACCTTGGAACAGTTTCATCTGAGCTCTATGAGCTCCCTGGGTGGCCCTGCTGCTTTCTCAGCGCGATGGGCACAGGAGATGTACAAGAAAGACAATGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 CHKCYP450Z.1 CAT M25469 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGACTCTTCTGACACTTGACATCTCTTCCTCTGCCCACCATGGACTTCCTGGGATTGCCCACAATCCTCTTGCTGGTCTGTATCTCATGCTTTCTCATTGCTGCATGGAGAAGTACATCGCAAAGAGGGAAGGAGCCTCCTGGTCCCACGCCAATCCCCATCATTGGAAATGTTTTTCAGCTGAACCCA .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230 CHKD3BHD5B.1 CAT D43763 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TTTAGCACTGAGGCAAGAGGGGATCGAAGCACTCAAAGCTCTACAGAGACAAACCTGCCAAAGAGGAGCAAACCAGAGCAATGTCGCTGGCGGGGGTAAGCTGCCTGGTGACCGGCGCAGGAGGGTTCCTTGGCCAGAGGATTGTTCGCTTACTGCTGGAAGAAGATGAGGCGCTGGCTGAGATCCGGCTGCTGGACAAAGCCTTCAGCAGGGAGGCACTCTGGAGCTTT ................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240 CHKDORSA.1 CAT L12032 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCTTTCCTCTGTCTGTAAAGATTCAACATTTTTAATCAGTTAAAATACTTTGTCCTCTTGTCTCTCCATCAGAAAGTAAATACATAAGAAATGCATTATTTTGGAGTATTAGCTGCACTGTCTGTTTTCAATATCATTGCCTGCCTGACAAGAGGCAAGCCTTTGGAAAACTGGAAAAAGCTACCAGTTATGGAAGAGTCTGATGCATTCTTTCATGATCCTGGGGAAGTGGAACATGAC ..........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 CHKEIF5A.1 CAT M99499 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAATTCCGGATGCCCTAAAGCACGTGCAACTCGTCGCACACGTCTCGCCCCGCAGCCGCCGCCATGGCCGACGAGTTGGACTTCACGACGGGCGACGCCGGCGCCTCGTCCACCTATCCCATGCAGTGCTCGGCGCTGCGTAAGAACGGCTTCGTGGTACTGAAGGGGCGCCCGTGTAAGATCGTGGAGATGTCCACCTCCAAGACGGGAAAG ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 CHKESTFL25.1 CAT D26340 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGGGCTGCTATGTTGCGGTGGCTCGTCGCGCTCCTCAGCCACTCCTGTTTTGTCTCCAAGGGCGGCGGCATGTTCTACGCGGTGCGCAAGGGCCGGCAGACGGGTGTCTACCGCACCTGGGCGGAGTGCCAGCAGCAGGTGAACAGGTTCCCTTCCGCC ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 CHKESTP20.1 CAT D82364 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCGCACCCGGCAATGTTTCCTAGAAGGGGCAGCAGCAGTAGCAGCGGCAGCAGCTGCGTTACTGCTCCCACTGCACCAGGTACCGGCGTTGGGAGCGCTGCCCTCTCCGCCGAGGATTACCAGCCGCCCCTGCTGGTCCAGCCGCCGCCTCCATCTCCTGCA .............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKFAS.1 CAT J03860 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AACCTGCTCAATGGGGTTGATATGGTCACAGAGGACGATCGGAGGTGGAAGCCAGGGATTTATGGACTGCCCAAAAGAAATGGAAAGCTCAAGGACATAAAAAAATTCGATGCCTCCTTCTTTGGGTCCACCCCAAACAAGCTCATACAATGGATCCTCCAGTTCGCTTGTTGTTGGAAGTTTCTTATGAGGCTATTTTGGATGGAGGCATTAATCCAACTGCCCTCCGTGGCACAGACACGGGTGTATGGGTTGGTGCAAGTGGCTCAGAAGCTGCTGAAGCCCTTAGCCAAGATCCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236 CHKFASB.1 CAT J04485 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATCCCCGCGGAGAGCGCGCCCCGCCCCGCCCGGATCCTCCCGGCACGAACCGTCCGCCTACGCAGTAACAGGGAGAAGTTCAGAGATGGAAGACGTGGTGATCGCAGGCATAGCAGGAAAGCTGCCGGAGTCTGAGAACTTGCAAGAGTTTTGGGAGAACCTGCTCAATGGGGTTGATATGGTCACAGAGGACGATCGGAGGTGGAAGCCAGGGATTTATGGACTGCCCAAAAGA ......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 CHKFIBAB.1 CAT M34096 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GTGGATGAGAGGATGATACCAGTGACGATACTCTGTGTGTTGCTCTGCCTCAATTTAGCTTGGGCTCAGGATGGGAAGACCACCTTTGAAAAGGAGGGCGGAGGCGGGCGTGGCCCCAGGATCCTAGAGAACATGCACGAGTCGTCCTGCAAGTATGAGAAG ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKGH6A.1 CAT L13786 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TTACTTCAAGAAACTAAGTGTACAGAACAGGATTTAGCACTCTCTTCTCCTGAGCAAAAATGACCTGAAATCTGGGACTCCTCTCAGCCCCTGAAGCTTTCCCCAAGGACCCCATTAATTCACGCTGCAACTCCGAGTCCAGGTTATGAATGGCACAAGACAGGGAGTGTTTGTGCAGTGCTGGATTTCAGCGCGGTGATTACACTCAGGGAAATACGGACAGAAGCACCGCGGCCGGCAATTGCCGGCGGCGGGGCAGCGGGGAGCCGAGGAGCCATCCTCCGGCGGAGGCCGACCCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 202 CHKGLUTI.1 CAT L07300 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCGCGCGACATCGCTCTGCTGTCCCGCGCCGATCCGACGCCCCCGGAGCAACATGGAGAGCGGCAGCAAGATGACAGCTCGCCTGATGCTGGCCGTGGGAGGAGCGGTGCTGGGCTCGCTGCAGTTCGGCTACAACACCGGCGTCATCAATCGCCCGCAGAAGGTGATTGAAGACTTCTACAACCACACCTGGCTGTACCGA ....................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234 CHKGPCR.1 CAT L06109 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AAGTTTTTAAAAGCTGCCCTGAAAACACCGGAGGAAGCTGCGCATCACAGGAATTGAGGCTTGTGTTTCTGATATACCACTATAATGGTAAGCTCTAACTGCTCCACTGAGGACTCCTTTAAGTACACTTTGTATGGCTGTGTCTTCAGCATGGTATTTGTCCTCGGCCTCATAGCCAACTGCGTTGCTATCTACATTTTTACTTTTACATTGAAAGTGCGGAACGAGACCACG ....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 CHKGSBP.1 CAT M22594 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCGGCCCCTGTGCCAACCCCGTCGCCGCGCTCGCAACCAAGTTTGACCCCCCTGATCCGAATGCTACGCGCTCTGTGTGCCCTGGCTTGGCGTGTAGCCCGAGTCGGAGCAGACGCTGAGGAGCAGGACAATGTGCTGGTGGCCAAGAAGAGCAACTTTCTGGAGCCGCTGGCTGCTCACAGCTACCTGGCTGTGGAGTTCTATGCACCA ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKHBOX7A.1 CAT M76985 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCCGCCGCTCCCGCGAGACGGCGACACGGGGCCGCCCTGCATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGCCCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCTGCCCTTCAGGCGGTGGAAGGGCTCATGGCCGACCGCGGAACGCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCCCCTCTCGCCGCCCGAGCCAACCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 CHKHMG1.1 CAT D14314 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCGAACAATACAGAGTCAGGATGGCTAAAGGTGACCCGAAGAAGCCCAAGGGCAAGATGTCTGCCTATGCCTTCTTTGTGCAGACGTGCCGTGAGGAGCACAAGAAGAACCCAGAGGTTCCTGTCAACTTTGCAGAGTTCTCTAAGAAGTGCTCAGAGAGGTGGAAGACC ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 CHKHOXB.1 CAT M81250 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCAGCTAATGCGGAGAAGCCGAGGTAGCCCTAATGATGGATTTTGATGAGCGTGTTCCTTGTTCCTCTAACATGTATTTGCCAAGTTGTACGTACTACGTCTCGGGTCCTGATTTCTCCAGCCTCCCTTCTTTTCTGCCCCAGACCCCGTCTTCTCGCCCTATGACATACTCCTACTCCTCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250 CHKHSPA.1 CAT M31321 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCGGGTTCGGCGGCGGTGCGGGAGGCGTTGCGGTGGGGTTCTACGGCTCGGGGCAGGGCGTTGGGCCGTTTTTCTCTCAGCATCAGCAGGCCGCGGCATCATGAAGTCAGCGTGGGCGCTGGCTCTGGCATGCACGCTTCTCCTGGCCGCATCGGTGACCGCTGAGGAGGTGGATGTGGATGCGACCGTGGAAGAAGATCTGGGTAAAAGTAGAGAAGGGTCCCGAACTGATGATGAAGTTGTTCAGAGA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKHSPCPRO.1 CAT L29089 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACTTGCAAGAAAACAAAGTTTCAATCACAGCCAAGGTTTTCCAAGGCTGTGGAAATCCCAAAGTCAGCATGAAAGGCTCCAGCAGTGAGGACAAGAAGAGGCGAGGGAAGGTCACGTTAGAAGCCAAATCCTCTGCAGTAGCACTGGAGATGCTGGTTTTGGATGCCAAAGGGAATCTGACAGCTCTCAAGTCTTACTGGGTCACCCTGCCTGGAGTCCTGTGCAGCAAAAAAATAATGGCCAGCCCAGCAGAGGATGACAAGTGTTGGAATGGGATGACCAAGGGCAGTTACCTGCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKJF11.1 CAT D14316 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGAAAAGTCTTTACCTGCTAAGTTGAACAAATTCTGAGGATGGAAATGAGTGCATTGCAGAAGCAATATTACAAGTGGATTTTAACAAGGAATTATAAAGCCCTCAGTAAAGGTTCAAAAGGCAGTACCTCAGGCTTCTGAACATTATGATGGAACTTAAGAAGTGTTGTAACCATTGCTACCTCATTAAGCCACCAGATGATAATGAATTCTATAATAAACAGGAGGCCTTACAGCATTTGATACGTAGCAGCGGGAAACTAATCCTTCTTGACAAGCTACTGATTCGTCTGCGAGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 265 CHKLECH.1 CAT J03188 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GACCCAGCTGTGGCCATTGTGCTGTGCTGGAGGATCCTGTGATCCCAAAACCCCGTTCTGCTCCCCGGGACCCCAAAACCTCCCTTCTGCTCCTTGGGATCCCAAAGCCGCGGCGATGGACGAGGAGAGGCTCAGCGACAATGTGAGGCTCTATAAAGGAGGCTCCATCCGGCAGGGGCTGCGATCCTTCGCTGCTGTTTACGTCCTCCTGGCGCTCTCCTTCCTCCTCCTCACCCTGCTGAGCTCCGTCTCATTAGCCAGAATT ...................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236 CHKLII.1 CAT M25774 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ATGAGCATCAACCTCAGCTTCAGCCTGGGAGAGAGAAAGCAGGACAGGTCTCTTGGTGTAAAGGGCTGAACTGGTACCAACAAACCATGGTGCAATACAGGGCATTGGTGATAGCTGTGATTCTGCTCCTTAGCACCACTGTCCCTGAAGTGCACTCAAAGTCCATCATTGACAGAGAACGTCGTGACTGGCTGGTCATCCCTGATGCAGCTGCAGCTTACATCTACGAAGCTGTG ......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 289 CHKLIM1A.1 CAT L35569 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATTTCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCTGCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGAATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTAC ...........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 CHKM2MR.1 CAT M73217 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ATAATGGTATATGTTTTTTCTTTCCTCTGCAGGCTTAAGTGATAATTGAGTATCTTGTTAGCAGCACAGAAATGAATAACTCAACGTACATAAACTCTTCCTCTGAAAATGTAATAGCTCTGGAGAGCCCCTATAAAACTATTGAGGTGGTCTTCATCGTCTTGGTGGCAGGGTCTCTCAGCTTAGTTACCATAATTGGGAACATCCTGGTCATGGTGTCA .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKM3MACR.1 CAT L10617 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACTGACACAGTAGTCGCCGGGAGCGAGGCAGATCTTGATCGTTATGGCAAAATCTTTCAGCAGTGTGTGGTATATCCAACTACAGGCCGGATGAACTACAGTCATCTGAAACATGATATATATATCTCCTCTTCCTTGTTCATGCCTACATGCTGACACACTACCAGTTGTGTTTCCAAAAGAGGAGTTCACAGAACTACACAGTGCCTGATCCTACTAGCTGCTTTGATGTTCCTCCCTGGACCATACTATGTCAGAGAGCCACAATGATCATGCACAATAACAGTTCAGCCTTGCCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 CHKM93KP.1 CAT D45365 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGACCGGGGTCCACTCCTCCCGGTGAGAGGCGTGGAGGCGTCCAGCTCATGCCCCGGAGGTTTTTCAGCCGCAGCAGCCGGAGGGGGGGACTATGGACTGAGCGCATCGCTGTACCATGGAGTCCGGCTGCGGCTTAGGCACGCTTTGCCTTCTCCTCTGCCTGGGGCCAGTCGTAGGCTTCGGCGTGGACCCCTCGCTGCAGATCGACGTGCTGTCCGAGCTGGGGCTGCCGGGCTACGCGGCGGGCGTGCGCCAGGTGCCGGGG .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 CHKMLCKA.1 CAT M14953 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATTCCGCTCTTTTTGAAGCCACTTGTTCTACCAAATGTTAGTGCACCATAATTTCCACCTGGATGAAATTCCGTAAGCAGATTCAAGAAAATGAATATATCAAAATTGAGAATGCTGAAAACAGCAGCAAGCTAACAATATCATCGACAAAGCAGGAACACTGCGGATGTTACACGCTAGTTGTAGAAAACAAACTTGGCAGCAGACAAGCA ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKMOS.1 CAT M19412 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCAGTTATGGGATCAGCTCATTGAGACAGATGCTGATCATTAGGGGGTGGGAGGGGAAAATGGTGCAGAGAGGATAAAAGAGCCTTAGGAAGATGCTCTGAGGAAGCCTTCCAGTCTCTTGTCCTAGTAACTGTTTCTGGCATCTTATTATGCCATCACCTATTCCTTTTAATAGCTTTCTTCCTTTGGAGCTCTCCCCATCTGCAGACTTGAGACCTTGCAGCAGCCCTGTAGTTATCCCTGGCAAAGATGGAAAAGCCTTCCTAGGAGGGACCCCTTCACCCAGGACACGCCGTCTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 CHKMYO.1 CAT D90157 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAGCCGTGCACAGTCCTCCCATGGAGCTCTTTGAGACCAACCCTTACTTTTTCCCGGAGCAGAGGTTTTACGATGGGGAAAACTTCCTGGGCTCCCGCTTGCAGGGCTACGAGGCGGCCGCGTTTCCTGAGCGTCCCGAGGTGACCCTGTGCCCTGAAAGCAGAGGGGCT ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 279 CHKNAKATPX.1 CAT L13208 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCATGTATAAACAACGTTTTCTTCAGTGGTGTATTACTGTACAGCAGTTGGAGGGAGCAAATTTCAATACAAGGCAGTTGTGGTTATATCCTGAAGTTACGAGAGCAGAACTGCAGCTGTCGCCTCGCCATGAGCAAGGAGACGAAGAAGCCGTTTCGCCAGAGCGTGGCCGAGTGGCGGCAGTTCGTCTACAACCCCAACAGCGGCGAGTTCCTGGGGCGCACGGCCAAGAGCTGGGGTTTGATCTTATTATTCTATCTGGTATTTTATGGCTTCCTC .................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237 CHKNT3A.1 CAT M83378 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ATATGTTTACAGCATTGAGCAAATCTTATTTAATTTCTTTTATCTTGACTTTCTGTTTCTTTGTAGATCTTACAGGTGAACAAGGTGATGTCCATCTTGTTTTATGTGATATTTCTTGCATATCTTCGTGGCATTCAGTCAACTAATATGGATCAAAGGAGTTTGCCAGAAGATTCAATGAATTCTCTCATTATTAAACTCATTCGGGCAGACATCTTGAAAAACAAGCTTTCTAAG .......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKP105A.1 CAT M86930 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGAAAAACGGGGGAAAGTCCGCGAGAGACGGGGCGCGGCGGGTCACCGCGTGACATGGGCGGCGCTGAGGGGTGCGCGGCCGGGACCTGGAGGCGACGACGGCGACGACGGCGCGGCTCAACCAGCCCTGCGCTGATCCAGGACTTAAAATGGCAGGAGAGGATCCGTATATTATGGGAGTGTCAGATCCCCAAATGTTTGCAATGGACCAGCTCATGGGAATGAGTACAATATTTAATAATACAGGTTACATCACTTCAGATTTACCACTACGAACAGCAGATGGACCGTATCTTCAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKPECM.1 CAT M14229 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TAGGACGCCACCTCAGAAACCAACGAGCGCTCCAAAGCAAGTGAAACACCATCAGCTGAAAGGGAGCCAAATCCCCACTGACACCCATCCGACTCAACAATTGTGATTAGTACTTCAAGCTCTCAACAAGACCCACTGCAGCTGCAGTAATGGCCCCAGAGCTGAAAACTGAGGTCAACATCATCTCTAAGGTTATCCAGGGGGACTTGGAGAGCCTGCCTCCACAAGTGAGGGAGTTCATTGAAAGCAATGCCAAGCTGTGCCAGCCTGAGAGCATTCATATCTGCGATGGCTCAGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 CHKPEPCK.1 CAT J05419 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCCTCGCCTATACTGGGACAATTTATAATGTTTTGGTTAAGAGGGGGGGCGCAGAGTTGTAGGGGGGGGGAAACTGAGGACAGAATGCAGCGCGGGATGTGGGGCGTGGGCCTGGCCCGGCGCAGGCTGAGCACGTCGCTGTCGGCGCTGCCGGCGGCCGCGCGGGATTTCGTGGAG ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 CHKPGLB.1 CAT D10485 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TTGAGAGATTGGAAGCAAAAGGGAAAAAGAAAAATCCAGAATGAAGACTTTTGTAAATATTTTTCTGGGATTTTTTATCTTTGAGTCTGTTGGAGCTGTACCTATCACTGACACTGTAACTTATGATTCTGAGTTCTATGATGTTTCACTTGGAGAACTGCCTCACCCATTTGTCTCTGCTGAAAACGAT ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKPGRRA.1 CAT M37518 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ATCGCTCTCCCCTCCGCAGGACCGTCCCGGCGGCGATCGGCGCACGGTCGGGGCTCCTCGGAACGCAGCGCCATGTGAACGGGAGCCCCGTCCGGGCCGCGAGGAGCCGCGCCGGAGGTTTGGCGGCGTCCAGCGCTGCTCCGGGCAGCATGACCGAGGTGAAGAGCAAGGAGACCCGAGCGCCTTCGTCCGCCCGAGACGGGGCGGTCCTGCTGCAGGCTCCCCCCAGCCGCGGGGAAGCGGAGGGCATCGACGTCGCCCTGGACGGGCTGCTCTACCCCAGAAGCAGCGACGAGGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKPHOPHOS.1 CAT L27625 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GTGGTGAAGATTTCTTATTGTCTCCTTTTAAACCTGATCAGGAATCTGATGACTTTTGGAGTTCAGTTCTCACCACTTCTTCAGCACATCTGGTTACAGAGGAGACCTCCCAAGAAGACATCCTTCCTTCCGGAAGCCCAGATATAAGCATGCAGGATGTCCTTTACCAAGGCTCTGTTACACATGTTTCAGAAGGTGCAGCACCCCCAAGCTCTGATAAGCCTCCAAAGCATACATCTTCCACTGATGGAAATTTGTGGTTTCGGAATGCTACGGAGCTGACAAGTCAGCCTGTTGGT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230 CHKPKM.1 CAT J00903 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGCGGCGGCGGCGCTCGGGCAGGACAGGCTTTGGGCACGGCGGCGGAAGCAGCAGCAGGAGACACCGAACTCCAGTAACCATGTCGAAGCACCACGATGCAGGGACCGCTTTCATCCAGACCCAGCAGCTGCACGCTGCCATGGCAGACACCTTTCTGGAGCACATGTGCCGCCTGGACATCGACTCCGAGCCAACCATTGCCAGAAACACCGGCATCATCTGCACCATC ................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 258 CHKPPGA.1 CAT M12111 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCGGGTCTTTTTTTCCGTTTTTTCTTTCTTTCTTTTTCTTTCTTTTTCCTTGCCCTTCTACTGCAGAGTGAGGGAAACTGTAGCTGAGGGAAAGAGTTATTTGTAAGGATGAGCGGCCTGTGGGGAGAACGGGACTTGTGCGCACGTGTGTCTCTGAGTGCACGGAATTTCTGTCATAATGAGCTCCCCTCACTGTGCCCCCGTAAGGCGTCCTGGGACTTTTCCCCACAGGGGAACTTTACGCGGTTGCCACACGGT ............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 277 CHKPPPTHY.1 CAT M20243 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TTTTAAAGTTAGATTTAAGGGATCCACTAAACCAATTCAGTAGTCTTTAAATATACTTGACATCAAGACACAGCCATCTGCTGACATACCCCAACCAGAAAACTGTTAAGGACAATATCTGATAAAAATGACTTCTACAAAAAATCTGGCCAAGGCCATAGTGATTTTATATGCTATATGTTTTTTTACAAACTCTGATGGAAGACCAATGATGAAGAGATCGGTGAGTGAGATGCAATTAATGCATAACCTTGGAGAGCATCGACACACTGTGGAG ...............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 CHKPPRN.1 CAT M17538 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCTTCGGGATCTCCAGCGCCTCTACCCAACAGAATGAAATACGCACAATATGTTTTCCTGGCATCAATCTTCTCTGCGGTTGAATATAGCCTAGCTCAGACCTGTGCAGTGGACTCCTTCTCCGTGAAAGACAATTTTGATCCAAAAAGGTATGCAGGAAAATGGTATGCCTTGGCCAAGAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKPRA1A.1 CAT M88178 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ATTACCGTTGGGTTGGGGATTCCCTCTCATTTTTTTTTCTTTCTTTTTTTTTTTTTTTTGGTAATTGGGGTTGAAACAAAATTCATTACCATAGAGCGCTTGATTAAAAAAACCCTTAAACGCAAAGCAGCTGCCATAATACTGGCAGGATGAATGGGACAGAAGGTATCAATTTTTATGTGCCTATGTCCAACAAGACAGGGGTGGTGCGAAGCCCCTTCGAGTACCCCCAGTATTACCTAGCCGAGCCCTGGAAATACCGCCTTGTGTGTTGCTACATCTTCTTCCTCATCTCCACT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 CHKPRL.1 CAT J04614 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCTTTCTGGTAGAGCAAGTCATCACACAGAATCCCTACCATGAGCAACAGAGGGGCTTCATTGAAAGGTTTGTTTCTGGCGGTTCTTCTGGTCTCCAACACACTTCTGACCAAGGAAGGAGTGACCTCCCTGCCAATCTGCCCCATTGGATCAGTCAACTGCCAAGTTTCCCTTGGGGAACTTTTTGAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKPRLREC.1 CAT D13154 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGTTACAGCCTGGGATGAAGATAGGGGGTAGATCAGATAATCAAGTGATCTGACGTTCATGAATGAGAGGAACAAAATTTTTCTTTGCACACATGAATCCTTTCGTGAGCCCTTGATGTGATACTTCTTTCCAAGAGGAAGTGGAAATCATGAAACAGGATTTGATATCGTCTGTTCAAATCATATTGTTCCTTCCTCTGACCACAGTGGGTCTGGCAGGTCAATCATTCCCTGGAAAACCTAAGATAATAAGATGTCGTTCTCTAGAAAAGGAAACCTTTTCTTGTTGGTGGAAGCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250 CHKRAV0GAG.1 CAT M73497 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AACCTACCGAGAACTCAGAGAGTCGTTGGAAGACGGGAAGGAAGCCCGACGACTGAGCAGTCCACCCCAGGCACGATTCCGGTCGCCCGGTGGATCAAGCATGGAAGCCGTCATAAAGGTGATTTCGTCCGCGTGTAAAACCTATTGCGGGAAAACCTCTCCTTCTAAGAAGGAAATAGGGGCCATGTTGTCCCTGTTACAAAAGGAAGGGTTGCTTATGTCTCCCTCAGACTTATATTCCCCGGGGTCC ....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKRPK2.1 CAT D14460 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CATCATGCAGCTTTTCCTCTACTCAGATGAACAAGTAGGCATTACAATGTTACTGCCATCTATGCACAAAGGACAACTTTACCTGTGTGACAGATGGGCTTTGTTTTACCTCTGTAACACGGACTGCAGATAGAGTCATACGCAATAGCATGTGTATAGCAGAAATTGATCTGATTCCTCGAGACAGGCCATTTATTTGTGCACCATCCTTCAGAGATGGAGTTACTACTTTGCCTCATTGCTGTGACAGAGACCACTGCAATAAAATAGAACTTCCAATTCCAACACCAGGTCCTACT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKSRVCNTK.1 CAT M57290 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GACACGTCTTTTTGGAGGCGTTCTGCATTGCTACCAAATGTGACTCCCCTGTGCTCGGGGGGGTGAATTTGGATGGTTCATTTAATTATCCTTTGCCTTTTCGTGACCCACCGGCCTCTGCCAGGTTGGGCTGTGAGGCTTTAATTAAGATGTCTTTCAATGTAACAGGAGTTGATGGAGTGGGATGGGAGCGGCCGCGCATTGCTTCTGCTGGGAGCACACAGCTGCACCTTACAGGGCCGTGGCGAAGGCATGGATTTGTCCTGGGGAGGGATGGAGGGATGGGCAGGGATGTGCTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234 CHKSRVCNTK.2 CAT M57290 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCTGATGGAGCACGGGGGGAAACCTTGGCCTGTGCTGGCCCCTCGTCCCACTGCTTATATCCAAAAGGATGCTCTCGGTTTTCTATGCTACAAACCAGGCTGGGGTTAACGCGCGGCTCTTCCAGGCAGGGCTGGCGGAGGCTGTGCTGCAGGGAAGGGAAGAAATACAGAGTTGAGGGGGGATTTAAAGCTGGTGGCGAGGCACTGCGTGGTGTCCCCGTGCCAATCTCCCTT ....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKSTCF.1 CAT D13516 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCCCGCAGCGGAGCGACAGCAGCTCGGGGCTGGCCGAGGGCAACCCCAATGCGTGGACTATTCGCCGCTGCAGCATGCTGGAGCTACAGTTCAGCTGAAGGGAGTTTGCACACGGCCGGCTGGGCTGGACTGCAGCGCTGCCATTCCTTATGAAGAAGGCACAAACTTGGATTATCACTTGCTTTTGTCTTCAACTACTCCTACTTAATCCTCTTGTCAAAGCCCAGAGTTCCTGCGGGAATCCAGTGACAGATGATGTAAATGATATTGCAAAATTGGTTGGAAATCTCCCAAATGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250 CHKTCRBV1.1 CAT M37798 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCATTTCTTCCTTCCTCAATGTTTCCTCCTCACACAACAGAGCTCCTAGGTCAGTGCTGGCACCACAGGCAGATCAGCTGAAGAAGATAACACTTTTCCCATGTTTCCCTGCTGGTTTCTTACGGCCTTGCTGGCCCATGTAGGCTGGGCTCTTCAGCAAACCCCAGACATGATTGTCCGACTGGGAGACTCTCTGACTCTGAACTGTTCACACAAAGAGAGTGGAGCCTGGACCATGCTCTGGTACAAG ....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226 CHKTCTORIN.1 CAT L38519 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGCAACGGCTACTGGAATAAGACCGCAATGAAAATCTGAAATACTTAATCCCCTCCTCTCTTGTCATTGCAAGAAATGGTGGCTGTTACTGTTTATCTGATGGTCATCTTGGCTCAAGCTTTTGCAGGGCCCTGCACTCCAAATAAAGCAGATGTAATTCTGGTATACTGCTATCCTAGAACCATCATTACAAAAATTCCAGAGTGTCCTTATGGATGGGAGGTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 CHKTELOKIN.1 CAT M96655 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCAGCTAATTTGTACGAAGCACCATTGTCACAGAAAATCACATGCCTTTTGGATTGGATTGATCAGAAGCCTTTTGTGTTATGTCTTAGAAAACAGGCCATGCTGTCCGAGCAATAGGAAGACTGTCATCCATGGCAATGATTTCTGGTATGAGTGGGAGGAAGGCCTCTGGGAGCTCGCCTACCAGCCCGATAAATGCAGACAAAGTAGAGAACGAAGATGCCTTCCTTGAAGAAGTGGCTGAGGAAAAGCCCCATGTAAAGCCATACTTTACTAAAACA ...................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKTGFBA.1 CAT L01121 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCGCGCGGGACGAGGCGTGGACGGAGCCCCTGCCAGGCAATTAGAAGCCTGGAAGATCTGATTTCAAAGCACACCACAATTTTCAAAGGAAGTAAATCTACATGAAGAGCTACAGAAAGAACTGATTTAAGAAGACGGTGCTTGCAAAAATGTCTTCAAGTTGTGTTACTCCAGTGTTTGCTTTGATGATTCTGTGTTTTGCAGATGCAGGTCCTGTGCCAAGGAGTGAGTGTGTGCTATCTCCTGTTAACAGTTCACACCCAGTCCATGCCCTGTTGGAGAGTTTCACAGTCTTATCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 294 CHKTHD.1 CAT J03882 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAGAGCGCTGAGGAGGCCCTGAGGCTGCGTGGCCGAGCTCGGTGCGGCAGAGCGATAGCGGAGAGCGCAGCGGCGTGCGGGACGCGCGTGCGCGGGACGAGGCCGTTGGCCGCCTTCTTGCTGTGCAGCCCAGGAGCCGCCGCCATGGTGAAGAGCGTGGGCAATCTGGCTGATTTTGAGGCAGAACTGAAAGCTGCTGGTGAGAAGCTTGTAGTAGTTGATTTCTCTGCCACATGGTGTGGACCATGTAAAATGATCAAGCCATTTTTCCATAGTCTGTGTGACAAGTTTGGT ................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 CHKTHROM.1 CAT M81391 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCAGTAGTTCTCAGTGAGAACTACTGCAGGCTGTACAGGATGGCGCACAGCAAAACCACTATGCTGCAGGGCCTGCTCCTTTTCGGCCTTCTGCACCTCACCTTGAGCCATGACGGAGTTTTCCTGGAAAAGGGGCAGGCACTGTCACTGCTCAAGCGTCCACGACGTGCCAACAAGGGATTTCTGGAA .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 CHKTIM.1 CAT M11314 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGGGCTACGGGGGGTGGGGCTTCGCGCCCCGCCGGCCTATAAAAGCGGCCGCCGCGGCTCCGTGCCGTTGCCGACCTTCGCCTGCGCCGCTGCTGCTTCGCGCCCGTCGCCTCCGCCATGGCTCCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAGATGAACGGCGACAAGAAGAGCTTGGGCGAGCTCATCCACACGCTGAATGGCGCCAAGCTCTCGGCCGACACCGAGGTGGTTTGCGGAGCCCCTTCAATCTACCTTGATTTT .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230 CHKVICOLL.1 CAT J05475 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCTACAAGATGACCTGTTTGGAGATTGCAGGTCCAGCTGGTCCCAAGGGATACCGAGGGCAAAAGGGTGCAAAGGGAAACATGGGTGAACCAGGCTCCCCTGGACTGAAGGGACGGCAGGGTGACCCAGGTATTGAAGGTCCAATTGGATACCCTGGTCCTAAGGGTGTTCCAGGGCTGAAAGGAGAAAAGGGCGAGATTGGATCTGATGGACGGAGGGGCGCAGCTGGT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 CHKVILM.1 CAT J03781 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGGAAGGTCCCCTGCCTGCAGCCAACACCATGGTGGAGCTCAGCAAAAAGGTCACCGGGAAGCTGGACAAGACCACGCCGGGCATCCAGATATGGAGAATCGAGAACATGGAGATGGTGCCGGTGCCCACTAAAAGCTATGGCAACTTCTACGAGGGGGACTGCTACGTGCTGCTGTCG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 CHKVINX.1 CAT J04126 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCCCCTGCCCCGCCGCCGCCATGCCCGTCTTCCACACGCGCACCATCGAGAGCATCTTGGAGCCCGTGGCTCAGCAGATCTCCCACCTGGTCATCATGCACGAGGAGGGGGAGGTAGACGGCAAGGCCATCCCGGACCTCACCGCCCCCGTGTCGGCCGTGCAGGCCGCT ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251 CHKVSCOC.1 CAT M92039 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCCACCTCCTCCCCCCACCACCGTCCCCCACCACCCTCCCCCACCTCCTCCCCCCACCTCCTCCCCCCCCCCGGCCCCACACCCCCCCTTTCCCATCCGCCATGTCATCGGACGACGACTTCTACCTCTTCACCAACGGCTCAGTGCCGGGCCCGTGGGACGGCCCCCAATACCACATCGCCCCCCCGTGGGCCTTCTACCTACAGACGGCCTTCATGGGGATCGTATTCGCCGTGGGGACCCCACTGAAC .....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 259 CHKW1P.1 CAT D31901 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCCCCAGCGCACGGGCTGAAGGAAATACATTGCACGGGAGATTCAGAAGCCTCCTATTTTCCCCTCGGAGCAGCTGATTTCTTTCTGAAAGTGGGGGACGGTGGAAAAAATGAAGCCGAGCCCGCAATTTTTCTTAGCTGCTTTTCTGTCCTTGATTCTGCAGACGGGGATTTGCTACGGGATAAAATGGATAGCTCTGTCCAAGACTCCTTCATCTTTGGCCCTGAATCAAACCCAGCACTGCAAGCAGCTAGAAGGC .............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 CHKZOV3B.1 CAT D16151 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCGGCGTGCTGGCCGGCTTCTGCCGCGGGCACCCGGGGCGGCTGGTGCGGCTGCTGCTGTTCTGCCTCTGCCTCCCGGGCGGCAGCTCGCAGGTCTGTTAGTAACGACGCGGGATGCCAGTCCTACTCAAGAGAATGCTTTGACTCAGATGAACACTGGACAGAAGTCATCTGCTGAGCCCATAACAACTACACAGACCGTCAGCCAAACAACCTGGGACAGCATTTCCAGCATTTCAGATCACTTGACGCTTGGACAGGATGTATCTACACCTGGTTCAGATCTTACCACATCAGGT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 GDAXII.1 CAT X53334 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCCGCCGCCAGAGCAGCCTTGCCCGCCCCGGCCAGCATTCTGCCAACATGTCTACTGTCCATGAAATTTTAAGCAAGCTCAGTCTGGAAGGAGATCATTCTCTCCCTCCAAGTGCATATGCCACAGTTAAGGCTTACTCAAACTTTGATGCTGACCGGGATGCTGCAGCCCTGGAAGCAGCCATCAAGACCAAAGGT ...............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GDCARANH.1 CAT Z14957 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCGAAGTCTCCCTCCGCCCCCGCCCGCGCTCCCCACCCCTTCCTCCGGCCGCGGAGAAGGGCATGGAGTTCGCGGGAGCCTATAAAAGCCCCTGACAGCCCGCCGAGGCCACGGCGTTGCGATAGCCGACGGAGCCGGGCCGGCGCACCATGTCCCATCACTGGGGGTACGACAGCCACAACGGACCCGCGCACTGGCACGAGCACTTCCCCATCGCCAATGGGGAGCGCCAGTCGCCCATCGCCATCAGCACCAAAGCCGCCCGCTACGACCCCGCGCTGAAGCCCCTCAGCTTCAGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 GDCFYN.1 CAT X52841 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TGATTTTAGATAATGGGCTGTGTGCAATGTAAGGACAAAGAGGCAACAAAACTGACTGACGAGAGGGATGGGAGTTTAACGCAAAGCTCAGGCTACCGCTATGGCACAGATCCCACGCCACAGCACTATCCAAGCTTTGGTGTGACTTCAATTCCAAACTAC ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GDCHOXA.1 CAT X57760 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCCAGGCCATGGCGGTGCGGGAGGCGGCCGCTGCGTGACACCCGGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGGAGAAGATGTATGTAGGCTATCTTTTGGATAAGGACACCAACATGTATCCCAGTCCCGTCCGGCATCCCGGCCTCAACCTCAACCCCCAGAACTACGTGCCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCCAGGGATTAACAACGACCCTCACCATGGGCAGCCCGCAGCCGCCTGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GDGABAAA.1 CAT X72806 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATTTGCTCCATCTCCAGCAGCAACCACTGCTCCTTTTGATGTTGTGGTACGCCGTGCGCATGCGCTTCACATTAGAATTACTGCACTGGCCAGAATAAGTTGGATCTCCTCTTCACTGAAACCCTAAACCATATCAAAAACTAAAGGGATGCTGAGAGTCCGGAAAAAGGGTTACTTTGGGATTTGGTCATTCCCTTTAATAATAGCAGCGGTGTGTGCACAGAGTGTCAATGACCCTAGTAACATGTCACTGGTGAAAGAGACCGTGGATAGACTGCTGAAGGGCTACGACATTCGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 290 GDMXGNA.1 CAT Z23168 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCGGCTGAATGTAGTTAATTGTTTCTCCTTGCTGTGTGACTCTGGCAGAGGCTGTCAAGAGTGGTCGGTGTCGATAATAATCACTGCTCGGTGCAGTACCTGCGGACAAGCCATAGAACAAGCCAGAAGAACAGCAGAACATGAACAATCCATGGTCCAACTTCAGCTCAGCTTTTGGATGTCCCATTCAGATCCCAAAGCAGAATAGTAATGTACCACCTTCCTTACCAGTACCTGTAGGAGTTTTTGGGGTGCCTCTGCGATCAGGCTGCAGCAATCAGATGGCTTTC ............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 GDPTHRP.1 CAT X52131 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TAAGCCCCGGAGGATATGATGTTCACGAAACTCTTTCAGCAGTGGAGTTTCGCGGTGTTTCTTCTGAGTTATTCTGTGCCCTCCTACGGAAGATCAGTAGAGGGGATCAGCCGCAGACTCAAACGGGCCGTATCAGAGCACCAGCTACTGCATGACAAGGGCAAA ...............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 175 GDTRTHY.1 CAT X60471 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCACAACTCACTAACAGCAAACAGAATGGCCTTTCACTCTACTCTTCTTGTTTTCTTAGCTGGACTGGTATTTCTCTCCGAAGCTGCACCACTGGTCTCCCATGGCTCTGTTGATTCCAAATGCCCTCTCATGGTGAAAGTGCTGGATGCAGTCAGAGGAAGTCCTGCAGCTAAC MMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 GDU06938.1 CAT U06938 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACTTCTGCCTTGCACCATGGAGAGGATCAGACCTCCAACTGTAGTCTCCCAGAGGAAGAGGCAGAAGGGAATGTATTCCCCAAAACTTTCCTGCGGTTATGAAATAAAATTCAATAAGCTTGTCATTTTTATTATGCAGAGGAAGATGGGGATGACCAGAAGGACA ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGALHOXB3.1 CAT X74506 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TATTATTGTGTGTTTTCTCCTAACCTTTCAGGTCAGCTTCCAATAGACAGCTGGAAATGGCCTGTCACGTGGCCTTGGGGTGCCAATGTTCTGCCATAGGGGTGTCAAGACCCTGGTAAATGGAAAAATCATTTTGGGGAATCCTGGAGATGCAGAAGACAACGTACTACGAAAGCTCCACGCTCTTTGGGGGCTATTCCTATGGGAGCACCAATGGGTTTGGCTACGAGGGTCCCCAGCAGCCCTTCCAACCGGGTTCCCACGTGGAGAACGACTTCCAGAGGTCCGCCTGCTCCCTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 205 GGBBPA2.1 CAT X52296 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAATTCATCTTCTTTTACCCTCTGCTCAGGAAAGGATAGACAGCCAGTTTGGACAATGCTTACTGAAAAGTGCTTGGGATTTTTTTATTCTGGACTGTGTCTGTGGGCATCCTTGTTCCTGTCTTTCTTTAAAGTATCTCAGCAGGGTGAAAGCCAGAGACGCTTGTACAGAGATCTGCTGAGAAACTACAATCGTCTGGAGCGC .......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 GGBGST.1 CAT X80503 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCCATGGACAGAGGTACTGCAGGCAGTAGGTGCAGCCTAGGCCCCAGGTGGTGACCGGCCCCAAGAAGGCCGGCAGCAGCCTGTCCTTGTGGCCTTAGCTTCCCCCCACGTCGTGCTCCACCAGCAGCAAGATGGTCACCGTCAGGAAAAGGAACGTGAAGGTCTTCACATTCGCCTTCGTACTCATCACGGTGACGTCATTCCTGCTGAACTACAAGCACCAGGTGACCATGACCACTTGGGATCCTAAACATATCATCAGTCAGTTTTCTGAGCAAGTC ...................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 273 GGCKR1.1 CAT X15538 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGCGCTGCGTTCGCCTCCATTCTGGGGTCTGAGGGGGATCCGCGCCCCATAGGATGCGTTTTCCCAACGTATGGATTTAATTCCAGGGGTCTCCCTGCCCTGTAGGGGATGCCCTGCCTGCCATGGAGCCCTATGTGCTGCTGGACCCGCGGCAGAAGGCGCTGTACCGGGATGTGATGCAGGAGAGCTACGAGACGCTGATGTCCATCGCTCAGGGCTTGGTGAACCACAAAGCAGCAGAGGAGGACGCCGTGGGGCTGAAGGAGGACGCC ...........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 GGCMIL.1 CAT X07017 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GACATAGATGATGCACTTCATCATTTTGTCATAGGACTTCACTGACATAAAGGAAAACGAAAGACTGCATCCATGGAGCACATTCAGGGAGCTTGGAAGACTATCAGTAATGGTTTTGGACTCAAGGATTCTGTCTTTGATGGCCCAAACTGCATTTCACCGACCATTGTCCAGCAGTTTGGTTATCAGCGCCGAGCATCTGATGATGGCAAGATATCAGAT ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 269 GGCONECNG.1 CAT X89598 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GACCGCCGCCGCACGGCAGCGGGCAGCGCCGCGGGGAGCGGGCGCCGAGAAAGTTTGGGTCCGGATATTGCCGAGGGAGGCGTGGAGGCTGTCAATTCGATGTTGGTATGTAAAGCAAAATGGCAAAAATCAACACCCAGCACTCGTACCCTGGCATGCATGGACTGTCTGTCAGAACTACTGATGAAGATATTGAAAGGATTGAAAATGGCTTTATCAGAACCCATTCACTGTGTGAGGACACATCTTCAGAACTGCAGAGGGTCATT .......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 188 GGCONTAC.1 CAT Y00813 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAATTCCTTTCGAGATAATCTCTGAATAGAAGATAACCATGAGGTTCTTCATCAGTCATCTTGTTACACTCTGTTTCATCTTCTGTGTGGCAGACTCTACCCATTTTTCAGAGGAAGGAAACAAAGGTTATGGACCCGTTTTTGAGGAGCAACCCATTGATACTATCTATCCAGAAGAATCTTCAGAT ......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 291 GGCRUNB.1 CAT Z36530 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACAAAAGGCACTGGGATAAAGCAGTGTGATGGCTGGGCAGAGGGTTGTAACCATGACCGTTCTTCATTTTTCACCTCCCAAGGTAGAAGAAATCATATATTCCTTCACTGTGAAGAGAAAGTGAGTTTTAAAGAGGAAACAATGGCTTCAAACAGCGTATTTGATTCACTTCCTTCTTACCAGCACTTCTTGAGAGATACCAGCACCAGCCGCCGCTTCACGCCGCCCTCCACCGCGCTGAGCCCGGGGAAGATGAGCGAGCCGCTGCCGCTGCCCGGCGCCGAGCACAGC .............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGCTF4.1 CAT X64295 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ATGAGCCAGCCTGGCTATGGTGGAATGCTGGGAGGCTCCTCTTCCCACATGTCCCAGTCCGGCAGTTACGGCAGCCTGCACACACACGACCGTTTGAGCTATCCCCCGCATTCAGTCTCGCCTACGATATAAATGCCAGTCTTCCTCCAATGTCAAGCTTCCATCGTGGCAGCACCAGCAGTTCACCTTACGTAGCTGCCTCACACACTCCACCTGTCAATGGATCAGAGAATATTCTGGGAAACAGAGGAAATGGCGCTGGAGGCTCACAGACAGGCGATGCGCTTGGGAAGGCATTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 201 GGCYCB2M.1 CAT X62531 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GTTTGTGTAGAGCGGCGCAAGCGGCTGCGGCCTACTCTGCTTTCCGTACCAATGGCGTTAACGCGTCGCGCAGCCGTCATGAGAGGGGTGGAGAATGCCGTGACTGGACATAATACCAAAGCCAAAGTTCAGGTGACTGGCAAGAGGGCTGTTTTGGAAGAAATAGGTAACAAAGTTGCAAGAGGATCCAATGTGCCCAAG ...................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGEAVDNA.1 CAT X59844 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCTACTGGGGAAGCCGAACACCCCGACACCGGAGAAGCGGAAAAAAACACTTATATGGGTGCGTGGACCACCGAAGACAGGCCAGGACACGGACCCGGCAACACAGACGTTACTGCCCACACCAAGAAATTTGGTTCTACCTCTGCTAATGTGCCTGTATCTATGTTCTTTGCCAGGGGGTGGCACGGCTATTGACTTCTTGCTTTTAGCTCAAAGCCACGGATGTGAGGATGTCGAAGGGTTCTGTTGCTTCAACTTAAGTGATCACAGTGCATCGATCCATAAACAACTACAGTGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGEOS47GN.1 CAT X91908 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AAGCAAGATAAATTGTTGAACAAAGTGCACCTGCATTTGAATGCTGCTGATTTTCACCAAGGAGCACACCAGGAAGAGCAGACTTGCAGAAGCACTGATCTGTGGGAGTTCTGAAGGCTGGAAAAGGCACAAATCCCAATGTTTTTAAGATGAAGAGCTCTGAAAATGTCTTGTACCTTCTCTTGGTTCACGCTGCTCTCAGCCTGGAACGTGTGCGGTGGTGCACCATGTCTAACCAAGAGCTTTCCAAGTGCAAGGACATGAGTAATGCCTTTACTGGGGCTGGGATCCTTCCCCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGFILA.1 CAT X72873 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACTGCCCTGGAGACAAGTCCTAATCATCTGGGGGGTGATTATGGTCAATTCTTCCTCCCCGAACCCCCCAGATTCAAATCAGATCCAAACTGGAGAGACAGGCAGGCACGGAAGAGGGGACACCGGCACAGCACAGCCCCCCCGAAGCCATGTACAGGAGCAGCTTCCTCCGCGAGGTTCGCAAGGAGAAGTACGAGCGCTCGGACGCCTATGATGAGCTGCGGGGCTCCCCTGAATTTGACAGCTTGGCCCAAGCCCAAGGCCTGGAGAACCTGCAGGAACTCAACGAGCGCTTCGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237 GGGABAA.1 CAT X73533 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GAATTCCGGCGCAGCGGGTATCGGGGGGGTCCCGCCGCCGCCGCCGCCGCTCCCCCCAAGCCCGGAGCCGGCCCTCGCCTCGCCGAGATGCCCGCGATGGTCCTGCTGCTCTGCCTGGCCCTAGGGCCGGCGCTGCGTTCTGCCAGGTGTGAGAGCACAGAGGAGTATGATTACGATTACCTCAGCATCAACAAAACCTGGGTCCTCACCCCCAAGGCACAGGAGACGGATGCCACG .......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGGALB.1 CAT X77775 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCTCCGGCTCACACCCTCCTTCCTCCACCGCTCCTCGGAACATCCATCGCTCCGTCCGTCCATCCGTGCGTCCATCCCGGCTGCGGGGAGCAGCGGAGCGCCGCCGCTTCGGATCCACGCGGACGGCGGACCCAACCCGGAGAGCAGCGATGGGTTCCCCCCGCTGGAAGCGTTTCTGCTTCTTGCTCCTCGCAGCCTTCACCTCGTCCCTTCTGCTCTACGGGCACTACTACGCTACGGTGGACGTGCGCAGCGGCCCGAGGGTCGTGACCAGCCTGCTGCAGCCAGAGCTGCTGTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 181 GGGALNAC.1 CAT X74946 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCGAGCTTCCATCTCTCCCGGGCCTCTCACTATGGGGTTTTTAATCAGAAGGCTTCCTAAAGATTCCAGAATATTCCGTTGGCTCCTTATTTTAACAGTCTTTTCCTTCATCATTACTAGTTTTAGCGCCTTGTTTGGCATGGAGAAAAGCATTTTCAGGCAGCTCAAGATTTACCAAAGC ...............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 GGGHOX.1 CAT X62019 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCGTTTTAGGCTTTCCGCTTATTCCCTGTTGTAACTAAATACTGCTGTAAGAACAGCTGAAGTCCTTTGTTGGAAATGTGTGATCGCAGTCTCTACAGATCTGGCTACGTTGGTTCTCTCTTGAACTTGCAATCTCCAGATTCCTTTTATTTTCCCAATTTGCGGGCTAATGGCAGTCAGTTGGCGGCTCTGCCCACCATTTCCTACCCCCGGAGCTCGATCCCG ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGGPARA.1 CAT Z48168 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TGCATGGGGTAGAGCCGGGAGCGCGCGAGGAGGGCACCAAACTCCCAGATCCGAGCGACGGGGTTCAGCCGATCGTGGGCAACCAGAAGAATCCCAGAGACTTTGATGATAAATTGGGGACGCCCCCAGGACTCAGGACCGGTGGAGAGATGGCCAATCCTGTCCCGTCAGCCTGCTGCGTGGTGCTCGCCGCGGTGGTGGTGGTGTACGCTCAGAGGCACAGCCAGCAGGACAGCCACATCCAGTATGAGCGGGTAGGTGCCGACGTGACCATGAAGTGCGGCTCCATGGACTGGGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 282 GGHRASR1.1 CAT X03578 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCCATTCTACCTCTCACCACATTGGTGTGCACCTGGGTTGATGGCCGGACCGTCGATTCCCTGACGACTACGAGCACCTACACCTGAGGTGGTGGTGCTCCTGGAGGCCCTGAGCTGGGGTCAGCTGGAAGATGACCGAGTACAAGCTGGTGGTAGTGGGAGCTGGAGGTGTCGGGAAGAGCGCTTTGACGATACAGCTCATTCAGAACCATTTTGTTGATGAGTACGACCCCACAATAGAGGATTCCTACAGAAAGCAAGTCGTCATCGATGGAGAGACC ....................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 GGIFNA1.1 CAT X92476 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGCACCACCACCGAGCCCCACCAGGCTCCTGCCCAGCACAACGCGAGTCCCACCATGGCTGTGCCTGCAAGCCCACAGCACCCACGGGGGTACGGCATCCTGCTGCTCACGCTCCTTCTGAAAGCTCTCGCCACCACCGCCTCCGCCTGCAACCACCTTCGCCCCCAGGATGCCACCTTCTCTCACGACAGCCTCCAGCTCCTC ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249 GGINTB2.1 CAT X71786 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGCTCTGGTGCTGGTCCCAGCCAGGCAGTGCAGCCAGGGGGCTACCAGCCTCACTGCAGTCCCAGAAGAGGAGCTGAAGGGAAGGCTTGATGTGAGGAAATGCCCCGTGACTGCTGCCTCTGGCTGCCAGCAATGACCTGGGTGCTGTTGCTACTGACAACAGCCTTTGCTGCAGAGTGTCCCAAGATCAAGGTGGGGACATGCAAGAACTGCATCCAGTCAGGCCCTGGCTGCGCCTGGTGCAAGAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 293 GGLBPA.1 CAT Y00789 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGAGCTTGGACTGAACACTAGGAAGGCAGCAGAAAGAGAAACTCGGTGCAGACGCCCACTGGAGCCCTTGGCCTCCTTCTCTTCCCAGACTGAGAAGGAGAGAGACCTTTGCCTGCACTGCGCTGAACTCCAAGGGTTCCCCAATGAAGGCGACTTGCTGGATCCTGGCAGGCTTTTGCCTGCTTTTCTGCTGCAAGGCAGAAGAAGGACTGAATTTCCCCACGTATGATGGGAAAGACCGAGTGATCGACCTGAACGAGAAGAACTACAAGCATGCCCTGAAGAAGTATGAC ...............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGLEP100.1 CAT X07775 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TGCTGATCTCTGCTTAACTGGCTGGGGGTTGTACACTTAAGGATCAGTTCTTATGTATGCATTGCCTGTAACAATGCTAATAAAGACACTTTTTTTCTGTAAAAAAAAGGAATTCCCTTCTGCCGCCGCCTCGCACCTCCTGCCCCGCCATGGGCGGCGCTGCTCGGGCCGTCCTGCTCGGCTTTTTACAGGCTTCCTCTTCATTTGACGTGAGAGATTCGACAGGCAAAGTCTGCATAATTGCTAACCTGACAGTAGCCTTCTCAGTGGAATACAAAAGCAGTGGGCAAAAGCAGTTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 GGMD1.1 CAT X60450 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGTGCAACCATGAAGACATTGAATGTTCTCGCTCTCGTCTTAGTCCTGCTTTGCATCAATGCCAGCACAGAGTGGCCTACACACACAGTCTGCAAGGAGGAAAACTTGGAGATATATTACAAAAGCTGTGATCCCCAGCAAGACTTTGCTTTCAGCATT ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGNFMTRFA.1 CAT Z21646 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCCGCACGGACTGAGACGCCCGGGCGGGCAGCGCAGCGGGCCGTGCCAGCGCCGGGCTCGGGAGACCCCCACCTGACGACGGCCGCTCGATCCCGTGCCGGGGGGGXXCCCAGCGCCGTCTTCTCCTCCCCGCATCCCCCTTTGCTTTCATGCAACGCCTGGTGGCCTGGGACGCAGCATGCCTCCCCATTCAGCCGCCCGCCTTTAAATCCATGGAAGTGGCTAATTTCTATTACGAGGCGGACTGTTTGGCTGCTCTCAACAAGCTGCACCCGCGGGCGGCCGGGGGCCGCTCCATG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGNFYB.1 CAT X59713 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TGGCACACAAGTAGAAATGGAAATGTGGACACAGAAGAGAACAAAAGCAAATATGGTACCTGAAAAATGCATTAATCTAATGAGGTCAAAAGTGCCAAGAGAGTCAGCGGGCTTTGAGAAGAGATTCAAACAAGAATTGTCCTTTGAAGATGGATGGTGATAGCTCCACGACGGATGCTTCTCAGTTAGGAATTGCTGGAGATTACATTGGTGGCAGTCACTACGTGATACAGCCTCATGATGACACAGAGGACAGCATGAATGATCATGAAGATACAAATGGTTCAAAAGAGAGTTTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 GGNRCAM.1 CAT X58482 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CAAGAGTGATTTACTTAGTAGAGCCTAAAATCATGATGAAAGAGAAGAGCATATCTGCAAGCAAAGCTTCCTTGGTTTTCTTTCTGTGCCAAATGATTTCTGCATTGGATGTACCTCTTGATTCAAAACTTCTAGAAGAATTGTCTCAACCTCCAACAATAACTCAGCAGTCTCCAAAAGAT ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232 GGP190MHR.1 CAT Z11718 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TGGCGGGCTGCGGGGCCCCGCTCTGTGCATTGTCCCGCCGCCGCCGCCCGCCCGCCCGCCGCAGGCGGCCGCGCCCCGCGCCATGGCCGCCTCCGAGCTGTACACCAAGTATGCCAGGGTTTGGATCCCTGACCCAGAGGAGGTCTGGAAGTCAGCAGAACTTCTTAAAGATTATAAACCTGGAGATAAAGTTTTGCAGCTTCGACTTGAAGAGGGCAAGGACCTAGAATAT ..................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243 GGPB1GENE.1 CAT X90849 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCGGCGGCGCGGAGCGGCGGCGCGGGGCGGAAGGCCGCGGCGGGCGGCGAGGAGCGGCGCGGAGCGGCGGCGGCAGGAAGAAGTTGGATTCCATGGGTTCTAAGAGGCGAAGAGCAACCTCGCCGTCCAGCAGCGTCAGCGGAGGGGACTTTGATGATGGCCACCACTCCACAAATATCCCAGGCCCAAGCAGGAAGAGAAGGAGGCTTTCCAATCTCCCAACTGTGGATCCTATTGCTGTA .............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237 GGRINGZNF.1 CAT X95455 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GATTCGGCACGAGCGCCTAGGAGGCGGCCTAGGTGCGGCCCTCGCTCCTGGTGCCGGGCCTCGCGCCCGGCCTGCAGATATTAAAATATGCTGCTGTCAATAGGAATGCTGATGTTGTCTGCCACTCAGATATACACTATTGTGACTGTTCAGTTATTTGCTTTCCTGAATCTCTTACCAGTGGAGGCAGATATTTTAGCGTATAACTTCGAAAATGGAACCCAGACCTTTGATGAT .......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 271 GGRNACMET.1 CAT X84044 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCGGGCCGAGCGCCGGAGCGGGGAGCGAGAGCGGTTGCCCGCCCGCCGGCCGCAGCGCTCGCCCCTCCGGCGGCGGTGCCGCTCCGCAGCGCTGCTCCGATCGCCGCGATTAAACCTGACAATGAAGCCTGTTACTGCCTATCCTTCTGGGATTATCCTATTCCTGTTTGCGTTGCTGCAAAGAAGTCATGGACAATGCAAAGAGGCAGCTAAAAAATCAGAGATGAACTTGAATGTAAAATATGATCTTCCTAACTTCATCACAGAGACG .........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 GGRNAHGF.1 CAT X84045 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCCGCCGGGGGGGCCGCCAGCACCATGTGGGCTACCCAACTCCTGCCAGCCTTGCTACTCCATCAGCTGCTGCTGCCTCCCATCACGATCCCTGCGGCAGAAGGTAAAGGAAAAAGGAGAAATCCTCTTCATGACTATAAAAAAACAGGCGAGTTGATGCTCATCAAAGTAAAC ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGRODCNG.1 CAT X89599 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGATTTAAGTCTGATATTCTGATATGTTGATGATATTTAGCTTTTCACGGTGGCTCCACTTATGTGGTAAGGAAACGTGGCTCATTTAGAGGACTGGAATCGCTACAAGAAGCAGCAGATTACATCACCAAGCTAAGACAACTTTGACCATGAAGGTAGGAGTAATTGAGACCCATCACTCCCATCCAATTATTCCCAGCGTGGTGGTGCAAGACACCAGTGAGGATCCTGGACTGATAGAGAAAGGGGAAAACAGATTTGCCAGGCAATGGTATCTACCTGGTGCATTTGCACAGTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199 GGSERPIN.1 CAT Z71930 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGGGGTGGTGTTGAGCTTCTGTGCTGAGCTGGTCTTAATATCTCACAACATGTATTTCCTTGGACTATTGTCTTTGCTCGTTCTGCCTAGTAAAGCCTTCAAGACCAATTTTCCTGATGAAACTATTGCTGAGCTTTCTGTGAATGTTTACAATCAGCTACGAGCTGCAAGAGAAGATGAGAATATTCTTTTCTGTCCT .................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGTGFB2E1.1 CAT X58071 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CACTGCATTTTGTCTGCAGATCCTCCCTTTGTTTGCACACATCCCCCTGTTATTTTTTAATATTAACCCCCCACCCCCCCACCCCCACCGTTGTCGTTCGTGGTTAAAGTCACTCTTTTTTCGGGGGGCGCTGTATTTAAGCACTTAAGATGCACTGCTATCTCCTGAGCGTGTTCCTCACCCTGGATCTGGCCGCCGTGGCTCTCAGCCTGTCTACCTGCAGCACCCTCGACATGGATCAGTTCATGCGCAAGAGGATCGAGGCGATCCGGGGGCAGATCCTGAGCAAGCTGAAGCTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGTGFB4.1 CAT X08012 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCGGGGTCAAATCCTCAGCAAACTGCGTCTGACCGCGCCCCCCCCCGCCTCCGAGACCCCCCCCCGCCCCCTGCCCGACGACGTCCGGGCTCTGTACAACAGCACCCAGGAGCTGCTGAAGCAGCGCGCCCGACTGCGGCCCCCCCCGGATGGACCCGATGAGTATTGGGCCAAAGAGCTGCGGCGGATCCCCATGGAGACCACCTGGGACGGCCCCATGGAGCATTGGCAGCCGCAGAGCCACAGCATCTTCTTCGTGTTCAACGTCGTCCCGCGTGCGCGCAGAGGTGGGCGGCCGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 GGTRKC.1 CAT X59669 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCACGAGGCCCTAGCGGGATTACCGAGCCAGCTGCCAGCATGCATTTCATCTGCTGGAGGATTTTTGCATCTGATCGCTTGAAGGTTTTGTTCAAGACAGACATCAATTGCAAGAAGCCGGATGATGGGAACCTCTTCCCTCTCTTGGAAGGGCAGGATTCAGGCAGCAGCAATGGCAACACGAGTATC ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 GGU07775.1 CAT U07775 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATTCCGGCAAAAGAGAAAACGGTGCAGAGAGTTAAGATGTGCAGATAAGCAACTAGTGCACTGTGCAGCCAAAGTAACTGACAGTCAGTCAGAGAAATCTTTTAAAGAGGATTGCAAAAATATAGGCAGAATGAAGACTCACAGTGTTTTTGGCTTCTTTTTTAAAGTACTATTAATCCAAGTGTATCTTTTTAACAAAACTTTAGCTGCACCGTCACCAATCATTAAGTTCCCTGGAGACAGCACTCCAAAAACAGACAAAGAGCTAGCAGTGCAATAC ...................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU12534.1 CAT U12534 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCCGGCCGTGCCGAGCCGTGCTGCGCTGCGGGCAGAGGTCCCCCGGCCGGCGGTACGGTACAGCGCAGCGCCCGGTTCGCAGGGCAAGGTGCGGCGGTGGGAGGGGGCGGCGGTCGGCGCGGAGCGGAGCGCCGCGGGGGAGCCCAGCGATGGTACAGCAGGCGGAGAGCGCGGAGAGCGAGAGCAACCTGCCCCGGGAGGCGATGGACACCGAAGAGGGCGAGTTCATGGCTTGCAGCCCGGTGGCTCTGGACGAGAGCGATCCGGACTGGTGCAAAACGGCGTCGGGGCACATCAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 GGU12974.1 CAT U12974 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AACAGAGAATCTCCAAGTTACCCGTCTCCTAAGCCACCAAGCAGTATGTTTGCTAGCACTTTCTTTATGCAAGATGGGACCCATAACTCTTCTGACCTCTGGAGTTCATCCAATGGCATGAGCCAGCCTGGCTATGGTGGAATGCTGGGAGGCTCCTCTTCCCACATGTCCCAGTCCGGCAGTTACGGCAGCCTG .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU17605.1 CAT U17605 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CCCCCCTCCGCCCGTGCTGCTTACAGCATCAGTCCGGAGCTGAGCGGGGAGACGGGCGCGATACCCCATAACCCACCCATGCTCGGGAATGCCTGAGTGCTAACGCAGCGCCTCCGACCGCAGCACCGGCCACCCCTCCGCACGCCAAGATGCAAGCCAGTGCCGACTCCACCAAGATGGACTGTCTTTGGAGCAACTGGAAATGTCAGGCTATCAACCTGTTGTACTGGCGCGAGATCAAGCAGACAGGGATCGTGTTTGGCAGCCTCCTGTTGCTGCTCTTCTCCCTGACCCAATTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU20160.1 CAT U20160 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus ACTGTGTGTCTGCCTCAGGATTTCCAGTGTACGATTATGAACTCCCTGTCACAGAAGAGGCTCTCAATGCTTCTATTGCAAGGATCAATTCTCAGACTTGGGGCCCAAACCTGTATGGAGTTGTCAGGAGCCACGTTAGACACGTTGACATGTGGAACAGCAATGATTATAGACTAGAGCTGCAGCTCAGTATTCGTGAAACCGAATGCACAAAAGCTTCAGGAAGAGACCCATTTACATGTGGCTTCAAAGTAGGGCCTTTTGTGCCAACTGCTGTCTGCAAAAGTGTTGTAGAAGTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 GGU25274.1 CAT U25274 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGGCGCCGAGCCGCCTCCCCCGGCCATGTCCGCCTGAGCCCGGCGATCCGCGCTATGACAGCAGTGTTTGACAGAAGGGTCCCCGGCATCAGGTCCTCCGACTTCCAGCCGCCTTTCCAGAGCGCCGCAGCCATGCACCACCCGTCCCAGGAATCTCCCACTTTACCCGAGTCCTCGGCTACGGATTCCGACTACTACAGCCCG ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU25353.1 CAT U25353 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GGCGGAATCCCGCTGCTCCCTGACAGCGACGCGGCCCCGGGCCGGCCGTCTGGCCGCGCTTCTTCGCCGCCCTCCTCCTCGTCGCCGAGTTGAGAAGGGGAGCAGCGTCCCGCCTCGCCTCTCGGAGCGCGGCGGTCCTCGCCGGCACGATGAAAAGTAAAAAAGGTGTAGTTGCAATATCAGGCAGTGAAACAGAGGATGATGACACTATGGATGTCCCACTAGATCTTTCCTCATCTGCTGGCTCGGGCAAACGGAGGAGACGTGGCAACCTACCCAAAGAGTCCGTGCAGATTCTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 GGU26661.1 CAT U26661 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CTCCTCCGTCGCGCTCCGATGGATATCACCATTCACAACCCCCTGATCCGCAGACCTCTGTTTTCTTGGTTGACACCGAGCCGTATCTTTGACCAGATATTTGGAGAGCACCTGCAGGAGTCAGAGCTGCTCCCTACCTCCCCCAGCCTCAGCCCCTTCCTGATGAGA MMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 GGU27196.1 CAT U27196 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCACTCAGCACATGAAGACACACAGCACGGAGAAGCCGCACATGTGTGACAAGTGTGGGAAGTCCTTTAAGAAGCGTTACACCTTCAAGATGCACCTGCTGACACATATCCAGGCCATTGCTAACCGCAGGTTCAAATGTGAGTTCTGTGACTACGTCTGC ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246 GGU27465.1 CAT U27465 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGAAGACATAACTATTAGAAGCTGAAGCTCACTGAGCTTATATCTGACATCTCCCAGAAGCTATCTGAGCATTTGAACTGAGCCATCACCAAGAAGATGACTTGCCAGACTTACAACTTGTTTGTTCTGTCTGTCATCATGATTTATTATGGACATACTGCAAGTAGTCTAAATCTTGTTCAACTTCAAGATGATATAGACAAACTGAAAGCTGACTTTAACTCAAGTCATTCAGATGTAGCTGAC ................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227 GGU27708.1 CAT U27708 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGAGCCTTTATTTTTAGTATGAGACAAACCTTGCTTTATTTCAGGAGACGCAAGTTGGATTATAAACCCTTTTGTAAATGTGTATGGTGATATTCGCTCCGCTTTTTGCAATCTTTGCATTTGCAACATGCGGTGGGTACTCTGGAGGACTGCGCCTCAGTGTGGACTGTGCAAACAAGTCAGAGAGTGACCTCAACATTGACATAGCCTTTGCCTACCCGTTCAGG .............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU28380.1 CAT U28380 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus GCAGCCGTCCCGCAGCCGTCCCGCAGCCGTCCCGCAGCATGCCCCCCGCTCTGCCCGCCGGCTGAACGCTTCAGACTCGGGACACCGCCAGCACAGCCTCCTGGAGCCGGACAAGGTAACCGAGGGAGCGCAGAGGGGAGCGCAGCACCATGGCACAGTCCGTGACGGCTTTCCAGGCTGCCTACATCTCCATCGAAGTGCTGATCGCTTTGGTGTCGGTGCCGGGGAATATCCTGGTCATCTGGGCTGTGAAGATGAACCAGGCGCTGCGGGATGCCACTTTCTGCTTCATCGTCTCG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU28980.1 CAT U28980 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGCGGCCGCGAGGAACGGGCTAGAAACGCTGCCGCCCTCCTCCTTTATCCTTCTTCTTTCCCCACCCCCTTCCCTCTTCCCTCCCCCCTCCCCCCTACCCCCCTGTAAAAACTTTTCCATCAGAGTAAGAGAGAAATCGCTTTGGGAACATGGAGTTGCTGTGCTGCGAGGTGGATCCTATGAGGAGAGCTTTGCCGGACCCGAACTTGCTCTACGACGACCGTGTTTTGCACAACTTACTGACGATAGAGGAGCGGTATCTGCCCCAGTGCTCCTACTTCAAGTGCGTGCAGAAGGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 GGU31977.1 CAT U31977 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATTCGGCACGAGATGGCGGCCGCCCAGCAGGCCAGGGCCGGAACCGGGGCGGCGGCGGCGCGGCCCTGAGCCCTGAGCACATGGGGAAATACTGCGCCAGCCTGGGCGTCCTCAAGGGGCCCTGGGACCAGGTGTTCGCCGCCTTCTGGCAGCGCTACCCCAACCCCTACAGCAAACATGTGCTGACCGAGGACATCGTGCACCGGGAGGTGACGGCGGACCACAAGCTG .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU34278.1 CAT U34278 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CGGAGGTGGTGTGCAGCCACAGGTTTCCATCCTGCCCCCACCTCCCGGGGAGCAGCCCTGTGCTATACCCAACCCCCCGCACAGAGCACTGAGCCGGCTGCTGCCTGCCTGCACCCCGCCGTGGGACCTTCTGCTCTTCCCAACAAGTGATGGCATCGCTGTGGGTGAGAGCCAGGAGGGTGTTCATGAAAAGTCGTGCTTCAGGTTTCTCGGCGAAGGCGGCGACGGAGATGGGGAGCGGCGGCGCGGAGAAGGGCTATCGGATCCCCGCCGGGAAGGGCCCGCACGCCGTGGGCTGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 178 GGU40598.1 CAT U40598 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus CACCCAGAGGTAGAGGTTCCCCAGCACCATGTCTGGATCCGGCCCTGCTATGGCATCATTGGAGCCAGGCCTCGCTGGGTCCCTGAACCGAGGCCAAACTGACGCCAGCAATGTCCCTGTTCCCCCACATCACCCCGTCCCCCATGCTCAGACCTACCTGGATGAGCTCATCAGCATC ............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 GGU40874.1 CAT U40874 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATTCGCGGCCGCCGGCCGCGGCCGGGGCAGCGGAGGGCCCGGGCCCGTCCCACGGCTCCTCATGGCCGGGAACTTCTGGCAGAGCTCGCACTATTTACAATGGATTTTGGATAAACAAGATCTACTGAAGGAGCGCCAAAAAGACTTGAAATTTCTGTCTGAAGAAGAATATTGGAAGCTACAGATATTTTTTACTAATGTTATCCAGGCT ..............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU48860.1 CAT U48860 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AGCAGACTGCAGAGTTTGCTGCAAATGCAAAACTGAAGTCCATCTTTGCACCTCTTACTTACCAAGGGGCTTCAGTGTCTTCTTCCTTGCAGTTCCTGGCTTTCCCCTAACCTCTCTTCTCGAAAGGAAGGTCTGTTCTGTTTCTGGCGATGCATCCCAAGAGGCGGCTCTGTTGGTGTCTCCCTGCTTCTGGTGCATGGGCATTCATGCTCACATCCTTAATTGCAGACACCACAGCCTGCGAGTCAGAGGAACGGCTGTTTCACAAACTCTTCTCCCGCTACAACCAGTTCATCAGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 GGU55871.1 CAT U55871 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus AATCCTGGGAATCCCTGTGTGCTAATTGAGCACTAACGAGATCAAAGCTCCCATCAGGCAATCATCACCCCCTGGCTCTGTCTTCAGTGCAGCTGGGAGTGGGTCCCCTGCACAGCACTGCTCTTTGTCTGTGGGTAGGAAAGCAGAGCATGTGGTGGCCTCTCCCTGCGTGTGCCAGCTTTGGAGCTGGCCTTGCCTGGGCTCTCCTTACTGTGGCTCTGGGGATGGATTTAAGTTTGCAGGAAAGTTTGCTGTTAAAATCCCTGGGTCTGAGCGCAAAGCCCAGCCCCAAAATCCCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 GGZYX.1 CAT X69190 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus. Gallus gallus TCCCCTCCTCGCTTCCCCTGAGCAGTCAAAAAGATGGCTTCTCCAGGTACCCCAGGGACCCGTATGACAACCACAGTCAGTATCAACATTTCCACACCGTCCTTTTACAACCCACAGAAGAAATTTGCACCCGTGGTTGCCCCTAAACCCAAGGTGAATCCCTTCAAGACTGGGGGTACATCG .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 S66387.1 CAT S66387 Unclassified. Gallus gallus CCCAGAAGGACAGCAAAAGAGGAAAAGAAGGGAACAACAATGCTGAGGTTTGCCATCACCCTCTTTGCTGTCATCACATCATCTACCTGCCAGCAGTATGGATGTCTGGAAGGGGACACCCACAAAGCGAATCCAAGTCCTGAGCCAAACATGCATGAATGCACTCTGTATTCTGAATCCTGTGAAGAT .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 270 D31784.1 CAT D31784 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAGAGCCAAGCAAAGAACATTAAGGAAGGAAGGAGGAATGAGGCTGGATACGGTGCAGTGAAAAAGGCACTTCCAAGAGTGGGGCACTCACTACGCACAGACTCGACGGTGCCATCAGCATGAGAACTTACCGCTACTTCTTGCTGCTCTTTTGGGTGGGCCAGCCCTACCCAACTCTCTCAACTCCACTATCAAAGAGGACTAGTGGTTTCCCAGCAAAGAAAAGGGCCCTGGAGCTCTCTGGAAACAGCAAAAATGAGCTGAACCGT ........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 D50402.1 CAT D50402 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GATGTAAGAGGCAGGGCACTCGGCTGCGGATGGGTAACAGGGCGTGGGCTGGCACACTTACTTGCACCAGTGCCCAGAGAGGGGGTGCAGGCTGAGGAGCTGCCCAGAGCACCGCTCACACTCCCAGAGTACCTGAAGTCGGCATTTCAATGACAGGTGACAAGGGTCCCCAAAGGCTAAGCGGGTCCAGCTATGGTTCCATCTCCAGCCCGACCAGCCCGACCAGCCCAGGGCCACGGCAAGCACCTCCCAGAGAGACCTACCTGAGTGAGAAGATCCCCATCCCAGACACAAAACCG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 176 D78586.1 CAT D78586 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCCCCGCCTCTGAGCTCCCTTCCCATGGCGGCCCTAGTGTTGGAGGACGGGTCGGTCCTGCGGGGCCAGCCCTTTGGGGCCGCCGTGTCGACTGCCGGGGAAGTGGTGTTTCAAACCGGCATGGTCGGCTACCCCGAGGCCCTCACTGATCCCTCCTACAAGGCACAGATCTTA ..........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HAAXTRSYV.1 CAT X90840 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGTGTTCCCCCCACACTGGGGCTCCCACTACTGCGAGGAGTGACCCACGAAGGCCACAGAGATGGCCGGGGCTTCGGTGAAGGTGGCGGTGCGGGTCCGCCCCTTCAATTCCCGGGAAATGAGCCGTGACTCCAAGTGCATCATTCAGATGTCTGGAAGCACCACCACCATTGTTAACCCCAAACAGCCCAAGGAGACGCCCAAAAGCTTC ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HAE14AT.1 CAT X91196 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTAGCTGCGTGGCTAACGGAGAAAAGAAGCCGTGGCCACGGGAGGAGGCGAGAGGAGTCGGGATCTGCGCTGCAACCACCGCCGCGGTTGATACTACTTTGACCTTCCGAGTGCAGTGACAGTGATGTGTGTTCTGAAATTGTGAACCATGAGTCTAGTACTTAATGATCTGCTTATCTGCTGCCGTCAACTAGAACATGATAGAGCTACAGAACGAAAGAAAGAAGTTGAGAAATTTAAGCGCCTGATTCGAGATCCTGAAACAATTAAACATCTAGATCGGAATTCAGATTCCAAA .........................................................MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HALIG4.1 CAT X83441 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTTGTGTTCAACTTTAGAACGAATACAGAAAAGTAAAGGACGTGCAGAAAAAATCAGACACTTCAGGGAATTTTTAGATTCTTGGAGAAAATTTCATGATGCTCTTCATAAGAACCACAAAGATGTCACAGACTCTTTTTATCCAGCAATGAGACTAATTCTTCCTCAGCTAGAAAGAGAGAGAATGGCCTATGGAATTAAAGAAACTATGCTTGCTAAGCTTTATATTGAGTTGCTTAATTTACCTAGAGATGGAAAAGATGCCCTCAAACTTTTAAACTACAGAACACCCACTGGA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227 HAMLN70.1 CAT X80201 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGACCCGCACGCCGCGCGCACAGAGCTCTCAGCGCCGCTCCCAGCCACAGCCTCCCGCGCCTCGCTCAGCTCCAACATGGCAAAAATCTCCAGCCCTACAGAGACTGAGCGGTGCATCGAGTCCCTGATTGCTGTCTTCCAGAAGTATGCTGGAAAGGATGGTTATAACTACACTCTCTCCAAGACAGAGTTCCTAAGCTTCATGAATACAGAACTAGCTGCCTTC .............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 269 HATK.1 CAT X91817 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCTATGAGGAGACCATGTGCCGAGGTCGTGTGCTAGGAAGCCAGTTGCTGTGAGAAATGACCAGTGTCATGTCTGTCTTTCAGCCACCCTACATCATGTAGCAGTTCTTCTGAGATCATGTCTGTGCTGTTCTTCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCGGACAACGACCGATTTGTCCTCGCAAAGAGACTGTCGTTTGTGGATGTGGCAACAGGATGGCTCGGACAAGGACTGGGAGTTGCATGTGGAATG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 HBNLF1.1 CAT X58140 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTTCCTCAGTTGCCTTGCTCCTGCCACACTACCCTGACCATGGAACGCGACCTTGAGAGCGCCCCACCCAGCGCGCCACGGCCCCCTCTAGGACCCCCCCTCTCCTCTTCCATAGGCCTTGCTCTCCTTCTCCTGCTCTTGGCGCTACTGTTCTGGCTGTATATCGTTATGAGTGACTGGACTGGAGGA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HHSCYSDIO.1 CAT Z31357 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTCGGCACTCTAATGCTGGGTTTGTGCGTGTGTGTCTGCTTAGCGGTCTAGCGGGCTGTTAGGCTCCCTCGCCCCCAGCTCCTTGGCTCGCTCAGCTCCTCCACCGCAGCCCAGCAGTGAGACGCGCGCGCAGCCAGCTCCCCACGAGATGGAACAGACCGAAGTGCTGAAGCCACGGACCCTGGCTGATCTGATCCGCATCCTGCACCAGCTCTTTGCCGGCGATGAGGTCAATGTAGAGGAGGTGCAGGCCATCATGGAAGCCTACGAGAGCGACCCCATCGAGTGGGCAATGTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HS1054RNA.1 CAT X57346 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCGCTCGGAGCTTCGCTCGGAAGGGTCTTTGTTCCCTGCAGCCCTCCCACGGCAGAGTCTCCAGAGATTTGGGCCGCTACAAAAAGTGCATTTTGCCCATTCGGCTGTGGATAGAGAAGCAGGAAGAGCACTGGACTTGGAGTCAGGGAATGACAATGGATAAAAGTGAGCTGGTACAGAAAGCCAAACTCGCTGAGCAGGCTGAGCGCTATGATGATATGGCTGCAGCCATGAAGGCAGTCACAGAACAGGGGCATGAACTCTCCAACGAAGAGAGAAATCTGCTCTCTGTTGCCTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HS14AGGRE.1 CAT X90857 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGCCGTTCTCCCGGCCGCCGCCTTAGCACCTCCTCCGGACGGTGTCGCCGAAGTCTCGCGAGCCCGGAGCGTGGCACGTGGGCCCCCTCCGCCTCCGGCTCCGTCCTCCTCTGGCCCCCTCCGCCCCCGGCCCCGGCCCCACGGCGGGATGCGGGACAACACCAGCCCCATCAGCGTGATTCTGGTGAGCTCGGGGAGCAGGGGCAATAAGCTGCTGTTCAGGTACCCCTTCCAGAGAAGCCAGGAGCACCCGGCGTCCCAGACAAGTAAGCCGCGTAGCAGATACGCTGCCAGCAAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HS18U.1 CAT X57352 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTTCCGCCCTCATCTGGCCCGGCCAAATCCCGATTTGACAAATGCCAGGAAAAGGAAACTGTTGAGAAACCGAAACTACTGGGGAAAGGGAGGGCTCACTGAGTAACCATCCCAGTAACCCGACCGCCGCTGGTCTTCGCTGGACACCATGAGTCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCCCCCCAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGGGGCCCCACAACCCTGCTCCCCCGACGTCCACCGTGATCCACATCCGCAGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 HS190.1 CAT X69090 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGACAGATTCCAGTCTGCTGTTAGATGATTATTCATCCAAGTTGAGCCCCAAACCAAAGAGAGCCAAGCACAGCCTACTGTCTGGAGAAGAGAAAGAAAATTTGCCCAGTGACTACATGGTACCCATTTTCTCAGGACGTCAAAAGCATGTCAGTGGAATTACTGATACGGAAGAAGAAAGAATTAAGGAAGCTGCTGCTTATATAGCCCAGAGGAATCTTCTTGCTAGTGAGGAAGGAATCACAACACCTAAACAGTCCACGGCA .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 167 HS23KDHBP.1 CAT X56932 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAAC .................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 HS25ABP.1 CAT X76388 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGGTCCTGAGACACGCTGTGTGGCTGAAAAGTGAAGGCAAGAGCTCATTTGGCCTCTGTGCTCCCCTCCGCAAGGGATCGTTTCTCCAGAAGAGCTGGATATTCTTTCGCCCAGTTATGGCAGACAAGTTAACGAGAATTGCTATTGTCAACCATGACAAATGTAAACCTAAGAAATGTCGACAGGAATGCAAAAAGAGTTGTCCTGTAGTTCGAATGGGAAAATTATGCATAGAGGTTACACCCCAGAGCAAAATAGCATGGATT .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 HS2OXOC.1 CAT X66114 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAGGGCCATTGAGTGGCGATGGCGGCGACGGCGAGTGCCGGGGCCGGCGGGATGGACGGGAAGCCCCGTACCTCCCCTAAGTCCGTCAAGTTCCTGTTTGGGGGCCTGGCCGGGATGGGAGCTACAGTTTTTGTCCAGCCCCTGGACCTGGTGAAGAACCGGATGCAG MMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 191 HS37LIM.1 CAT X93510 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAGAGTCCGGCTCAGGCTCCGGCTGCGGCTCCAGCCCGCGATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCTGGTGGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGGGTCCATGCTGGCAGCAAGGCCTCATTGGCTGCCCTGTGCCCAGGAGACCTGATCCAGGCC .........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 205 HS5HT2BSR.1 CAT X77307 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TACTAACCATGCTGACCACTGTTCGGAACGGGATTGAATCACAGAAAAACAGCAAATGGCTCTCTCTTACAGAGTGTCTGAACTTCAAAGCACAATTCCTGAGCACATTTTGCAGAGCACCTTTGTTCACGTTATCTCTTCTAACTGGTCTGGATTACAGACAGAATCAATACCAGAGGAAATGAAACAGATTGTTGAGGAACAG .......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HS5HT5A1.1 CAT X81411 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCCCTTAAGTCCTCTTGAACACCCCTTCTGCAAGTACCCCAGGGCGGTCTCCTGACCCAGAGATGGATTTACCAGTGAACCTAACCTCCTTTTCCCTCTCCACCCCCTCCCCTTTGGAGACCAACCACAGCCTCGGCAAAGACGACCTGCGCCCCAGCTCGCCCCTGCTCTCGGTCTTCGGAGTGCTTATTCTCACCTTGCTGGGCTTTCTG ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSA1S9.1 CAT X52897 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCATTGTGCTCTAAAGGTTTGAGAGCGGGGACTTTGTCTCCTTTTCAGAAGTACAGGGCATGGTTGAACTCAACGGAAATCAGCCCATGGAGATCAAAGTCCTGGGTCCTTATACCTTTAGCATCTGTGACACCTCCAACTTCTCCGACTACATCCGTGGAGGCATCGTCAGTCAGGTCAAAGTACCTAAGAAGATTAGCTTTAAATCC ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSACCAGEN.1 CAT X83956 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATGTGGGGATAAGGCATTGGGACTCTATCAGGTATCCTGAGGAGAGACTCCCACCACGTATCCTGAGAAGCACCTCACCCCCTCCAGACCCCAACTCCCATCACCCAGCTTGGTCAGCTTCTCACAAGGCCTTTCTCCTGCAGGTACCATGATGTGGGGTGCAGGCAGCCCTCTGGCCTGGCTCTCAGCTGGCTCAGGCAACGTGAATGTAAGCAGCGTGGGCCCAGCAGAGGGGCCCACAGGTCCAGCCGCACCACTGCCCTCGCCTAAGGCCTGGGATGTGGTGCTCTGCATCTCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 HSACETR.1 CAT X66403 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACGCAGCAGGATGGCAAGGGCTCCGCTTGGGGTCCTGCTCCTCTTGGGGCTTCTCGGCAGGGGTGTGGGGAAGAACGAGGAACTGCGTCTTTATCACCATCTCTTCAACAACTATGACCCAGGAAGCCGGCCAGTGCGGGAGCCTGAGGATACTGTCACC ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 173 HSACPP.1 CAT X52174 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCCAGAAACAGCTCTCCTCAACATGAGAGCTGCACCCCTCCTCCTGGCCAGGGCAGCAAGCTTAGCCTTGGCTTCTTGTTTCTGCTTTTTTTGCTGGCTAGACCGAAGTGTACTAGCCAAGGAGTTGAAGTTTGTGACTTTGGTGTTTCGGCATGGAGACCGAAGTCCCATT .......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSACTAR.1 CAT X15804 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCGCGGCGGAACCGGGCGCAGGGGAGCGAGCCCGGCCCCGCCAGCCCAGCCCAGCCCAGCCCTACTCCCTCCCCACGCCAGGGCAGCAGCCGTTGCTCAGAGAGAAGGTGGAGGAAGAAATCCAGACCCTAGCACGCGCGCACCATCATGGACCATTATGATTCTCAGCAAACCAACGATTACATGCAGCCAGAAGAGGACTGGGACCGGGACCTGCTCCTGGACCCGGCCTGGGAGAAGCAGCAGAGAAAGACATTCACGGCATGGTGTAACTCCCACCTCCGGAAGGCGGGGACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSACTHR.1 CAT X65633 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAATATTCTGTATACTCCCTTTAGGTGATTGGAGATTTAACTTAGATCTCCAGCAAGTGCTACAAGAAGAAAAGATCCTGAAGAATCAATCAAGTTTCCGTGAAGTCAAGTCCAAGTAACATCCCCGCCTTAACCACAAGCAGGAGAAATGAAGCACATTATCAACTCGTATGAAAACATCAACAACACAGCAAGAAATAATTCCGACTGTCCTCGTGTGGTTTTGCCGGAGGAGATATTTTTCACAATTTCCATTGTTGGAGTTTTGGAGAATCTGATCGTCCTGCTGGCTGTGTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSADE2H1.1 CAT X53793 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAGCCCTCAGCCCACTTAGGATAATGGCGACAGCTGAGGTACTGAACATTGGTAAAAAATTATATGAGGGTAAAACAAAAGAAGTCTACGAATTGTTAGACAGTCCAGGAAAAGTCCTCCTGCAGTCCAAGGACCAGATTACAGCAGGAAATGCAGCTAGAAAAAACCACCTG ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 HSADH3G2.1 CAT X04299 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GATGCACTCAAGCAGAGAAGAAATCCACAAGTACTCACCAGCCTCCTGGTCTGCAGAGAAGACAGAATCAATATGAGCACAGCAGGAAAAGTAATCAAATGCAAAGCAGCTGTGCTATGGGAGTTAAAGAAACCCTTTTCCATTGAGGAGGTAGAGGTTGCACCTCCTAAGGCTCATGAAGTTCGCATTAAGATGGTGGCTGCAGGAATCTGTCGTTCAGAT ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 HSADSS.1 CAT X66503 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCAGAGCAGTTCAGTTCGCTCACTCCTCGCCGGCCGCCTCTCCTTCGGGCTCTCCTCGCGTCACTGGAGCCATGGCGTTCGCCGAGACCTACCCGGCGGCATCCTCCCTGCCCAACGGCGATTGCGGCCGCCCCAGGGCGGCCGGAGGAAACCGGGTGACGGTGGTGCTCGGTGCGCAGTGGGGCGACGAAGGCAAAGGGAAGGTGGTGGACCTGCTGGCG ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241 HSAFH1.1 CAT X00318 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACCGCACCCTCGGACTGCCCCAAGGCCCCCGCCGCCGCTCCAGCGCCGCGCAGCCACCGCCGCCGCCGCCGCCTCTCCTTAGTCGCCGCCATGACGACCGCGTCCACCTCGCAGGTGCGCCAGAACTACCACCAGGACTCAGAGGCCGCCATCAACCGCCAGATCAACCTGGAGCTCTACGCCTCCTACGTTTACCTGTCCATGTCTTACTACTTTGACCGCGATGATGTGGCTTTGAAG ...........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 297 HSAFPA4.1 CAT Y00264 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGTTTCCTCGGCAGCGGTAGGCGAGAGCACGCGGAGGAGCGTGCGCGGGGGCCCCGGGAGACGGCGGCGGTGGCGGCGCGGGCAGAGCAAGGACGCGGCGGATCCCACTCGCACAGCAGCGCACTCGGTGCCCCGCGCAGGGTCGCGATGCTGCCCGGTTTGGCACTGCTCCTGCTGGCCGCCTGGACGGCTCGGGCGCTGGAGGTACCCACTGATGGTAATGCTGGCCTGCTGGCTGAACCCCAGATTGCCATGTTCTGTGGCAGACTGAACATGCACATGAATGTCCAGAATGGG ...................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSAHCDBEN.1 CAT Z14961 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCAGGGCTTCATTTTTTGCCCTCCCCCACCATGGGCTCAACCGCCATCCTCGCCCTCCTCCTGGCTGTTCTCCTAGGTGTCGACGAATCAGGGACGATTCGGACCGCAACTCGTACTCAAAGACAGACCACTAGTGGACCTTTAACTGTCCCCGCGCGAGACAACTTCGTTCCCTCAACT ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224 HSALBU.1 CAT V00495 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGATGTCTTCTGGCAATTTCATATAAGTATTTTTTCAAAAATGTCTCTTCTGTCAACCCCACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCTTTAGCTCGGCTTATTCCAGGGGTGTGTTTCGTCGAGATGCACACAAGAGTGAGGTTGCTCATCGGTTTAAAGATTTGGGAGAAGAAAATTTCAAAGCCTTGGTGTTGATTGCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSALIPOA.1 CAT X06290 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGGGATTGGGACACACTTTCTGGACACTGCTGGCCAGTCCCAAAATGGAACATAAGGAAGTGGTTCTTCTACTTCTTTTATTTCTGAAATCAGCAGCACCTGAGCAAAGCCATGTGGTCCAGGATTGCTACCATGGTGATGGACAGAGTTATCGAGGCACGTACTCCACCACTGTCACAGGAAGGACCTGCCAA .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSALK3A.1 CAT Z22535 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCGTAAGAAAGCAGTGGGAGTTGAAGTCATTGTCAAGTGCTTGCGATCTTTTACAAGAAAATCTCACTGAATGATAGTCATTTAAATTGGTGAAGTAGCAAGACCAATTATTAAAGGTGACAGTACACAGGAAACATTACAATTGAACAATGACTCAGCTATACATTTACATCAGATTATTGGGAGCCTATTTGTTCATCATTTCTCGTGTTCAAGGACAGAATCTGGATAGTATGCTTCATGGCACTGGGATGAAATCAGACTCCGACCAGAAAAAGTCAGAAAATGGAGTAACCTTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSAMY2B1.1 CAT X07057 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCAAAGCAAAATGAAGTTCTTTCTGTTGCTTTTCACCATTGGGTTCTGCTGGGCTCAGTATTCCCCAAATACACAACAAGGACGGACATCTATTGTTCATCTGTTTGAATGGCGATGGGTTGATATTGCTCTTGAATGTGAGCGATATTTAGCTCCCAAG MMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246 HSANFG1.1 CAT X01470 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACAGGGACAGACGTAGGCCAAGAGAGGGGAACCAGAGAGGAACCAGAGGGGAGAGACAGAGCAGCAAGCAGTGGATTGCTCCTTGACGACGCCAGCATGAGCTCCTTCTCCACCACCACCGTGAGCTTCCTCCTTTTACTGGCATTCCAGCTCCTAGGTCAGACCAGAGCTAATCCCATGTACAATGCCGTGTCCAACGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAAGAAAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 264 HSAP17.1 CAT X97074 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGCTTGATAGCAAGTTCAGCCTGGTTAAGTCCAAGCTGAATTCCGTGCACCCTGAGCCGGAGCTGCCCAGTCGCCGCGGGACCGGGGCCGCTGGGGTCTGGACGGGGGTCGCCATGATCCGCTTTATCCTCATCCAGAACCGGGCAGGCAAGACGCGCCTGGCCAAGTGGTACATGCAGTTTGATGATGATGAGAAACAGAAGCTGATCGAGGAGGTGCATGCCGTGGTCACCGTCCGAGACGCCAAACACACCAACTTTGTG ..................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 HSAPC3B.1 CAT X01388 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCTTTTTTTTTTTTTTTTTGTTGCTCAGTTCATCCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCCGAGCTTCAGAGGCCGAGGATGCCTCCCTTCTCAGCTTCATGCAGGGTTACATGAAGCACGCCACCAAGACCGCCAAGGATGCACTGAGCAGCGTG .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSAPO1.1 CAT X63717 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGCCTCAGGGGCGGGCACTGGCACGGAACACACCCTGAGGCCAGCCCTGGCTGCCCAGGCGGAGCTGCCTCTTCTCCCGCGGGTTGGTGGACCCGCTCAGTACGGAGTTGGGGAAGCTCTTTCACTTCGGAGGATTGCTCAACAACCATGCTGGGCATCTGGACCCTCCTACCTCTGGTTCTTACGTCTGTTGCTAGATTATCGTCCAAAAGTGTTAATGCCCAAGTGACTGACATCAACTCCAAGGGATTGGAATTGAGGAAGACTGTTACTACAGTTGAGACTCAGAACTTGGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 201 HSAPOA2A.1 CAT X00955 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATACCCGAGGACAGAGATGTTGGTTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAGCAACTGTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACAGGCAAAGGAGCCATGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAG ...................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 HSAPOHR.1 CAT X53595 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACTTTGGTAGTGCCAGTGTGACTCATCCACAATGATTTCTCCAGTGCTCATCTTGTTCTCGAGTTTTCTCTGCCATGTTGCTATTGCAGGACGGACCTGTCCCAAGCCAGATGATTTACCATTTTCCACAGTGGTCCCGTTAAAAACATTCTATGAGCCAGGAGAAGAGATTACGTATTCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 HSARCP2.1 CAT X81197 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGCGGTTCCTGTCAAGGGGGCAGCAGGTCCAGAGCTGCTGGTGCTCCCGTTCCCCAGACCCTACCCCTATCCCCAGTGGAGCCGGAGTGCGGCGCGCCCCACCACCGCCCTCACCATGGTGCTGTTGGCAGCAGCGGTCTGCACAAAAGCAGGAAAGGCTATTGTTTCTCGACAGTTTGTGGAAATGACCCGAACTCGGATTGAGGGCTTATTAGCAGCTTTTCCAAAGCTCATGAACACTGGAAAACAACATACGTTTGTTGAA .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199 HSARP450.1 CAT Y07508 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGACGTCGCGACTCTAAATTGCCCCCTCTGAGGTCAAGGAACACAAGATGGTTTTGGAAATGCTGAACCCGATACATTATAACATCACCAGCATCGTGCCTGAAGCCATGCCTGCTGCCACCATGCCAGTCCTGCTCCTCACTGGCCTTTTTCTCTTGGTGTGGAATTATGAGGGCACATCCTCAATACCAGGTCCT .................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226 HSARSD.1 CAT X83572 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAAGCCTTGGCACTAGCGGCGCCCGGGCGCGGAGTGCGCAGGGCAAGGTCCTGCGCTCTGGGCCAGCGCTCGGCCATGCGATCCGCCGCGCGGAGGGGACGCGCCGCGCCCGCCGCCAGGGACTCTTTGCCGGTGCTACTGTTTTTATGCTTGCTTCTGAAGACGTGTGAACCTAAAACTGCAAATGCCTTTAAACCAAATATCCTACTGATCATGGCGGATGAT ............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 217 HSARSE.1 CAT X83573 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTTCCTCTTCTTGATCGGGGATTCAGGAAGGAGCCCAGGAGCAGAGGAAGTAGAGAGAGAGACAACATGTTACATCTGCACCATTCTTGTTTGTGTTTCAGGAGCTGGCTGCCAGCGATGCTCGCTGTACTGCTAAGTTTGGCACCATCAGCTTCCAGCGACATTTCCGCCTCCCGACCGAACATCCTTCTTCTGATGGCGGACGACCTTGGCATT ...................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSASBCMA.1 CAT Z29572 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CATCATCTATTCTGACAAAAGATTTTTAAAGTGGCACTGCTCGAGTCGAAATGGTTAATTACCTAGCAGAAATTGATTTCTCTATCTCCGTAGCACTCAAAGCAGCTGGCAGGCTCTTGCAATAGTCATTCGTTTTTGTGGTGACAAGAATGGTTGCGCCTTCCTCCATAGCTGGGAGTGGAAAGCAATGGTCAGAGTCGACCTTCGGTTTGCTCTTGATGCAGTCTTCACAGGTGCATTCTTCCACCGTGTACTCGAGGCCTCTCGGAAGAATAATTTCATCACCAGTCCTGCTCTTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSASD.1 CAT X01630 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAGCCCGAGTGGTTCACTGCACTGTGAAAACAGATTCCAGACGCCGGGAACTCACGCCTCCAATCCCAGACGCTATGTCCAGCAAAGGCTCCGTGGTTCTGGCCTACAGTGGCGGCCTGGACACCTCGTGCATCCTCGTGTGGCTGAAGGAACAAGGCTATGACGTCATTGCCTATCTGGCCAACATTGGCCAGAAGGAAGACTTCGAGGAAGCCAGGAAGAAG ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSASPG2.1 CAT X17544 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGCCAACAACGGGACCTGCGTGAGCCTGGACGTGGCCTCTATGAATGCTCCTGTGCCCCCGGGTACTCGGGAAAGGACTGCCAGAAAAAGGACGGGCCCTGTGTGATCAACGGCTCCCCCTGCCAGCACGGAGGCACCTGCGTGGATGATGAGGGCCGGGCCTCCCATGCCTCCTGCCTGTGCCCCCCTGGCTTCTCAGGCAATTTCTGCGAGATCGTGGCCAACAGCTGCACCCCCAACCCATGCGAGAACGACGGCGTCTGCACTGACATTGGGGGCGACTTCCGCTGCCGGTGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSAT3.1 CAT X68793 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTGACCTCAGTTCCCCCTCCTGACCAGCTCTCTGCCCCACCCTGTCCTCTGGAACCTCTGCGAGATTTAGAGGAAAGAACCAGTTTTCAGGCGGATTGCCTCAGATCACACTATCTCCACTTGCCCAGCCCTGTGGAAGATTAGCGGCCATGTATTCCAATGTGATAGGAACTGTAACCTCTGGAAAAAGGAAGGTTTATCTTTTGTCCTTGCTGCTCATTGGCTTCTGGGACTGCGTGACCTGTCACGGGAGCCCTGTGGACATCTGCACAGCCAAGCCGCGGGACATTCCCATGAAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254 HSATPCP2P.1 CAT X69909 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGCCCTCTCCCTGACCCCCCACTGTATGTTTAAACAGGAGAGTCCTGTCTGTCTTCTCTGCACTGGGAGCAGCTCTCCTGCCATAGCCCCTCACCCCGTAAAAATGTATGCCTGCTCCAAATTCATCTCCACTCCCTCCTTGGTCAAGAGCACCTCACAGCTGCTGAGCCATCCACTATCTGCAGTGGTGTTGAAATGACCGGAGACAATGGCAGATGAGAGTCTCAGCAGCTTGGCAGTCTCATGTCCCCTT ........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 207 HSATPF1M.1 CAT X59066 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCCAGTCAGTCCGGAGGCTGCGGCTGCAGAAGTACCGCTGCGGAGTAACTGCAAAGATGCTGTCCGTGCGCGTTGCTGCGGCCGTGGTCCGCGCCCTTCCTCGGCGGGCCGGACTGGTCTCCAGAAATGCTTTGGGTTCATCTTTCATTGCTGCAAGGAACTTCCATGCCTCTAACACTCATCTTCAAAAGACTGGGACTGCTGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSATPRMR.1 CAT Z49205 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCCCTGCGCGCCCCCTCCCGCGGGGATCCAGTTCGCCTGCTCCCTTCCGCTCGCTGGCTTTTCCGATGCTTGCTGCGCCCCTGGCCGCCGCTGCCCTCTCGCCGCCTCCTACCCCTCGGAGCCGCCGCCTAAGTCGAGGAGGAGAGAATGACCGAGGTGCTGTGGCCGGCTGTCCCCAACGGGACGGACGCTGCCTTCCTGGCCGGTCCGGGTTCGTCCTGGGGGAACAGCACGGTCGCCTCCACTGCCGCCGTCTCCTCGTCGTTCAAATGCGCCTTGACCAAGACGGGCTTCCAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSATPSYN.1 CAT X60221 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCTAAGATTGCTACCTGGACTTTCGTTGACCATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAGGGGTATTGCAGGCAACAAGGACCTTTCATACAGGGCAGCCACACCTTGTCCCTGTACCACCTCTTCCTGAATAC ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSATPSYNT.1 CAT X83218 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGCTTGGCACGAGGCCTACAACCGCCCGGGAGAAGATGGCTGCCCCAGCAGTGTCCGGGCTCTCCCGGCAGGTGCGATGCTTCAGTACCTCTGTGGTCAGACCATTTGCCAAGCTTGTGAGGCCTCCTGTTCAGGTATACGGTATTGAAGGTCGCTATGCCACAGCTCTTTATTCTGCTGCATCA ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSB1MLA.1 CAT X84838 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGAGACAGCAGAGATGCAGAGACAGCAGAGATGCAGAGACAGCAGAGAGTGGACGAACGAGGAGGGTGTGGGGTGGCTGGGGATGGCGTGAGGTCCAGGGAACAGGAGGGGCTCTCGTGCACCAGCGTGGGTGGAGAAATCAAACAGGATGAAGCCTCGACAGAAAGAACAGGACACGAGACTGAGGAAGCTCCGAGAGAGCAGCGAGGGAGACCAGTGGCTGGAAAATGAGAAAACAAAGCCACTGAGGCCCCAGCAGCAGCCCCAGCGCCGACCAGCAGGGGGCACAGGACAGAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 201 HSBBC1.1 CAT X64707 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTTCCGCTCGGCTGTTTTCCTGCGCAGGAGCCGCAGGGCCGTAGGCAGCCATGGCGCCCAGCCGGAATGGCATGGTCTTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGACGTAAGGCCCGGCAAGCCAAGGCGCGCCGCATCGCCCCGCGCCCC ...................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 HSBCDECAS.1 CAT Z14093 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTGGTTAGCCAAGATGGCGGTAGCGATCGCTGCAGCGAGGGTCTGGCGGCTAAACCGTGGTTTGAGCCAGGCTGCCCTCCTGCTGCTGCGGCAGCCTGGGGCTCGGGGACTGGCTAGATCTCACCCCCCCAGGCAGCAGCAGCAGTTTTCATCTCTGGATGAC .............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBCL7A.1 CAT X89984 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGTGTGTGTGTGTGAGAGTGTGTGCGTGTGAGAGTGCGAGTGTCTGTGCGCGAGTGAGTGAGCGGCGGGCGGGCGCGAGTGTGGCCGGCCGGAGCGCGAGCATGACCCGGCGGGCGCGCTCCCCAGCCTCCGTCTCCCCGCCGGAACCATGTCGGGCAGGTCGGTTCGAGCCGAGACGAGGAGCCGGGCCAAAGATGATATCAAGAGGGTCATGGCGGCGATCGAGAAAGTGCGCAAATGGGAGAAGAAATGGGTGACCGTTGGTGACACATCCCTACGAATCTACAAATGGGTCCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSBFCRII.1 CAT X52473 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTGTGACTGCTGTGCTCTGGGCGCCACGTCGCTCCAGGGAGTGATGGGAATCCTGTCATTCTTACCTGTCCTTGCCACTGAGAGTGACTGGGCTGACTGCAAGTCCCCCCAGCCTTGGGGTCATATGCTTCTGTGGACAGCTGTGCTATTCCTGGCTCCTGTTGCTGGGACACCTGCAGCTCCCCCAAAGGCT .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBGPG.1 CAT X04143 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAGATTCCCCCTAGACCCGCCCGCACCATGGTCAGGCATGCCCCTCCTCATCGCTGGGCACAGCCCAGAGGGTATAAACAGTGCTGGAGGCTGGCGGGGCAGGCCAGCTGAGTCCTGAGCAGCAGCCCAGCGCAGCCACCGAGACACCATGAGAGCCCTCACACTCCTCGCCCTATTGGCCCTGGCCGCACTTTGCATCGCTGGCCAGGCAGGTGCGAAGCCCAGCGGTGCAGAGTCCAGCAAAGCCTTTGTGTCCAAGCAGGAGGGCAGCGAGGTAGTGAAGAGACCCAGGCGCTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBHRPO77.1 CAT X81372 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTAAGGCTTTAATCACGGGTCCCGAGAGCCCTAAGTCTTCTCTTTGCTTGCTGATCTCGTACCTTAATGTGCAAAAGAATCACGTTGGGAACTGAAAATTCAGAATCCTGGGCCTCACTCCCAGAGGATCTGATCTACATGTGTGGAGATGCCCAGGAATCTGCTTTATTCTCTTTTGTCCTCCCACCTGTCCCCCCATTTCAGCACCTCGGTAACCTCTGCCAAAGTGGCTGTGAATGGCGTTCAGCTGCATTACCAGCAGACTGGAGAGGGAGATCACGCAGTCCTGCTACTTCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSBLEO.1 CAT X92106 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGCGAGCCGCAGCGCAATCCCGGCGCTCGCCCAAGGACCCTGGAAGCTACCGTTACCCCGCCGGCAGCGTGGGCGCCATGAGCAGCTCGGGACTGAATTCGGAGAAGGTAGCTGCTCTGATACAGAAACTGAATTCCGACCCCCAGTTCGTACTTGCCCAGAATGTCGGGACCACCCACGACCTGCTGGACATCTGTCTGAAGCGGGCCACGGTGCAGCGCGCGCAG ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198 HSBLR1A.1 CAT X68149 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCAACATAAGACAGTGACCAGTCTGGTGACTCACAGCCGGCACAGCCATGAACTACCCGCTAACGCTGGAAATGGACCTCGAGAACCTGGAGGACCTGTTCTGGGAACTGGACAGATTGGACAACTATAACGACACCTCCCTGGTGGAAAATCATCTCTGCCCTGCCACAGAGGGTCCCCTCATGGCCTCCTTCAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBMPRII.1 CAT Z48923 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCTCATCAGCCATTTGTCCTTTCAAACTGTATTGTGATACGGGCAGGATCAGTCCACGGGAGAGAAGACGAGCCTCCCGGCTGTTTCTCCGCCGGTCTACTTCCCATATTTCTTTTCTTTGCCCTCCTGATTCTTGGCTGGCCCAGGGATGACTTCCTCGCTGCAGCGGCCCTGGCGGGTGCCCTGGCTACCATGGACCATCCTGCTGGTCAGCACTGCGGCTGCTTCGCAGAATCAAGAACGGCTATGTGCGTTTAAAGATCCGTATCAGCAAGACCTTGGGATAGGTGAGAGTAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 277 HSBMYB.1 CAT X13293 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGACGCCTTCGAGCGCGGCCCGGGGCCCGGAGCGGCCGGAGCAGCCCGGGTCCTGACCCCGGCCCGGCTCCCGCTCCGGGCTCTGCCGGCGGGCGGGCGAGCGCGGCGCGGTCCGGGCCGGGGGGATGTCTCGGCGGACGCGCTGCGAGGATCTGGATGAGCTGCACTACCAGGACACAGATTCAGATGTGCCGGAGCAGAGGGATAGCAAGTGCAAGGTCAAATGGACCCATGAGGAGGACGAGCAGCTGAGGGCCCTGGTGAGGCAGTTTGGA ...............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBNGFAC.1 CAT X52599 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGGAGCGCAGCGAGTTTTGGCCAGTGGTCGTGCAGTCCAAGGGGCTGGATGGCATGCTGGACCCAAGCTCAGCTCAGCGTCCGGACCCAATAACAGTTTTACCAAGGGAGCAGCTTTCTATCCTGGCCACACTGAGGTGCATAGCGTAATGTCCATGTTGTTCTACACTCTGATCACAGCTTTTCTGATCGGCATACAGGCGGAACCACACTCAGAGAGCAATGTCCCTGCAGGACACACCATCCCCCAAGTCCACTGGACTAAACTTCAGCATTCCCTTGACACTGCCCTTCGCAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 178 HSBRK.1 CAT X78549 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTGGTCCTGCCGCTGCGCCCGCCCGCCATGGTGTCCCGGGACCAGGCTCACCTGGGCCCCAAGTATGTGGGCCTCTGGGACTTCAAGTCCCGGACGGACGAGGAGCTGAGCTTCCGCGCGGGGGACGTCTTCCACGTGGCCAGGAAGGAGGAGCAGTGGTGGTGGGCCACGCTGCTG ............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSBRN4.1 CAT X82324 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACATTATAACTAGTAGGGGATCCTCACCGACCATGGCCACAGCTGCCTCGAATCCCTACAGCATTCTCAGTTCCACCTCCCTAGTCCATGCGGACTCTGCGGGCATGCAGCAGGGGAGTCCTTTCCGCAACCCTCAGAAACTTCTCCAAAGTGATTACTTGCAGGGAGTTCCCAGCAATGGG ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBTF244S1.1 CAT U21911 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGTCTGGCTAGCTAGGCGGCTGGGAGCGTTTTCGTGGCGGGGAACGGAGGTTGAATTGCCCTGCCTGGGCTCATAGGGAAGGAGGATGTGAAGGAGCTTGTGAAGGCAGAGGAAGATTATTGAATAATAAAATACAGTTTTGAAAAAAATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAGATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAGGCAAAGAGAAAAAGAGTATTTGAGCACCAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 284 HSBTF3A.1 CAT X53280 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGCCCCTTATTCGCTCCGACAAGGTACAAAAAGGCTCTGGACGGCGGCGTGGTAGGAGGACGGGAGCGGGGGCGGGAAGTTCCCTGAAGGAGCGAGACAGGGAGGGACAGGGCAGAGGAGGAGAAGGAAGGCGATGCGACGGACAGGCGCACCCGCTCAGGCTGACTCTCGGGGGCGAGGTCGAGCCAGGGGCGGCTGCCCTGGGGGCGAGGCGACGCTGTCTCAACCTCCACCTCGCGGCGGAACCCGAGGACAGGAGCCTCAGATGAAAGAAACAATCATG ......................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSBTF3B.1 CAT X53281 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCAGAATGAGACAATAAGCAGCATTAACTTCATAGGCACACAGAACTAGTGCTCAAACTGCTACCACCCTTTTCAATTGCTATCTTTTGAAAGGCACCACTATTTGTTTTGCTGGGGTCTCGGGTGGACCCTTATTCGCTCCGACAAGATGAAAGAAACAATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCGCAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGACAAAAAACTTCAGTTCTCCTTAAAGAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSBVRGENE.1 CAT X93086 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGGTGGCGCCCGGAGCTGCACGGAGAGCGTGCCCGTCAGTGACCGAAGAAGAGACCAAGATGAATGCAGAGCCCGAGAGGAAGTTTGGCGTGGTGGTGGTTGGTGTTGGCCGAGCCGGCTCCGTGCGGATGAGGGACTTGCGGAATCCACACCCTTCCTCAGCGTTCCTGAACCTGATTGGCTTCGTGTCGAGAAGGGAGCTCGGGAGC ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 HSC1DPROT.1 CAT X95592 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTTCCGGGAGACTGGAGTCGAAGGCCGTGAGTATTTTCTAAGCCAGTGTTTAGAGAGTATGTGAGGCAAGAGTACCTATAGAACCCGGAGGAGGGTGAGGAGCAGAGCTGGCCATAATGGCAGGTGAAGAAATTAATGAAGACTATCCAGTAGAAATTCACGAGTATTTGTCAGCGTTTGAGAATTCCATTGGTGCTGTGGATGAGATGCTGAAGACCATGATGTCTGTTTCTAGAAATGAGTTGTTGCAGAAGTTGGATCCACTT .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 201 HSC1R.1 CAT X04701 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGCACGAAGACGCTGTCGGGAGAGCCCAGGATTCAACACGGGCCTTGAGAAATGTGGCTCTTGTACCTCCTGGTGCCGGCCCTGTTCTGCAGGGCAGGAGGCTCCATTCCCATCCCTCAGAAGTTATTTGGGGAGGTGACTTCCCCTCTGTTCCCCAAGCCTTACCCCAACAACTTTGAAACAACCACTGTGATCACAGTC ...................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 200 HSC54.1 CAT X17025 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTGTGGCCGGAGGCTGATCAGTGTTCTAGAACAGATCAGACATTTTGTAATGATGCCTGAAATAAACACTAACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTTATTGATGAAAATGACAATAAAATTGGAGCTGAGACCAAGAAGAATTGTCACCTGAACGAGAACATTGAGAAAGGATTA ..................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 HSCALB.1 CAT X65869 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAACTCCTCTTTGATTCTTCTAGCTGTTTCACTATTGGGCAACCAGACACCAGAATGAGTACTAAAAAGTCTCCTGAGGAACTGAAGAGGATTTTTGAAAAATATGCAGCCAAAGAAGGTGATCCAGACCAGTTGTCAAAGGATGAACTGAAGCTATTGATTCAGGCTGAATTCCCCAGTTTACTCAAAGGTCCAAACACCCTA ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 192 HSCALRTR.1 CAT X56667 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGCGGGAGCGGTGCAGGCTGAGGTCTCCGAGCGGCTCGCCATGGCTGGCCCGCAGCAGCAGCCCCCTTACCTGCACCTGGCCGAGCTGACGGCGTCCCAGTTCCTGGAAATATGGAAGCACTTTGACGCAGACGGAAATGGGTATATTGAAGGTAAAGAGCTAGAAAACTTTTTCCAAGAGCTGGAGAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 HSCAMPAT1.1 CAT X62466 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGCTACCAAGACAGCCACGAAGATCCTACCAAAATGAAGCGCTTCCTCTTCCTCCTACTCACCATCAGCCTCCTGGTTATGGTACAGATACAAACTGGACTCTCAGGACAAAACGACACCAGCCAAACCAGCAGCCCCTCAGCATCCAGCAACATAAGCGGAGGCATTTTCCTTTTCTTCGTG .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244 HSCAN.1 CAT X64228 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGGGAGGAAGTTTGCTGTCGAGCGGCCTGGGTTCCGTGGGCAAGGCGTGGGTGGCAGCGTTGGCTCGTTCGACGACACACTGAGGGCGGCGCGATGGGAGACGAGATGGATGCCATGATTCCCGAGCGGGAGATGAAGGATTTTCAGTTTAGAGCGCTAAAGAAGGTGAGAATCTTTGACTCCCCTGAGGAATTGCCCAAGGAACGCTCGAGTCTGCTTGCTGTGTCCAACAAATATGGTCTG ..............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 HSCANN6.1 CAT X81120 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTGCCCCCTGTGGGTCACTTTCTCAGTCATTTTGAGCTCAGCCTAATCAAAGACTGAGGTTATGAAGTCGATCCTAGATGGCCTTGCAGATACCACCTTCCGCACCATCACCACTGACCTCCTGTACGTGGGCTCAAATGACATTCAGTACGAAGACATCAAAGGTGACATGGCATCCAAATTAGGGTACTTCCCACAGAAATTCCCTTTA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220 HSCATR.1 CAT X04076 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTGCCTGCTGAGGGTGGAGACCCACGAGCCGAGGCCTCCTGCAGTGTTCTGCACAGCAAACCGCACGCTATGGCTGACAGCCGGGATCCCGCCAGCGACCAGATGCAGCACTGGAAGGAGCAGCGGGCCGCGCAGAAAGCTGATGTCCTGACCACTGGAGCTGGTAACCCAGTAGGAGACAAACTTAATGTTATTACAGTAGGGCCCCGTGGGCCCCTT ......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSCAVEOMR.1 CAT Z18951 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGGAGTTTTCATCCAGCCACGGGCCAGCATGTCTGGGGGCAAATACGTAGACTCGGAGGGACATCTCTACACCGTTCCCATCCGGGAACAGGGCAACATCTACAAGCCCAACAACAAGGCCATGGCAGACGAGCTGAGCGAGAAGCAAGTGTACGACGCGCACACCAAGGAGATCGAC ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251 HSCC23.2 CAT Z70293 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAATAAAGAGACAAAAGAGGCCAGCCACCCACCTCCAACACCTCCTGAGCCTCTGAAGCTCCCACCAGGCCAGCTCTCCTCCCACAACAGCTTCCCACAGCATGAAGATCTCCGTGGCTGCCATTCCCTTCTTCCTCCTCATCACCATCGCCCTAGGGACCAAGACTGAATCCTCCTCACAAACTGGGGGGAAACCGAAGGTTGTTAAAATACAGCTAAAGTTGGTGGGGGGACCTTACCACCCCTCAGAG .....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCCG1.1 CAT X07024 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACATCCTATGGGCCTTAGGCCCATACTCGGAGAACGAGTCCATTGGACAAAGAACATGGCTGAGAGACCTTCTGGGGGCCTTGAAGAGGCCGCCTCCTTGGTCTCCTCAACCCCAGTGTAAGTCTGGGGAGGCCCAAGGTGAGGGTCATGTATCGGGATGAATGTAAGAAGCACTTGGCAGGCTTGGGGGCTTTGGGGCTGGGCAGCCTGATCACTGAACTCACGGCAAATGAAGAATTGACCGGGACTGACGGTGCCTTGGTAAATGATGAAGGGTGGGTTAGGAGTACAGAAGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 201 HSCCSHP4.1 CAT X65977 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCTGCCCTCTCTGCTCGCCCTGCCTAGCTTGAGGATCTGTCACCCCAGCCATGAGGATTATCGCCCTCCTCGCTGCTATTCTCTTGGTAGCCCTCCAGGTCCGGGCAGGCCCACTCCAGGCAAGAGGTGATGAGGCTCCAGGCCAGGAGCAGCGTGGGCCAGAAGACCAGGACATATCTATTTCCTTTGCATGGGATAAA ...................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 265 HSCD441.1 CAT X56794 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCT ...................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220 HSCD97.1 CAT X84700 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCTGTGGAGACGGGACAGCCCTGTCCCACTCACTCTTTCCCCTGCCGCTCCTGCCGGCAGCTCCAACCATGGGAGGCCGCGTCTTTCTCGCATTCTGTGTCTGGCTGACTCTGCCGGGAGCTGAAACCCAGGACTCCAGGGGCTGTGCCCGGTGGTGCCCTCAGAACTCCTCGTGTGTCAATGCCACCGCCTGTCGCTGCAATCCAGGGTTCAGCTCT ......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 176 HSCDK8.1 CAT X85753 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCTCCGGCCTCAGAGGCTGTGACAATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATGCT ..........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 196 HSCDW40.1 CAT X60592 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCGCTCGGGCGCCCAGTGGTCCTGCCGCCTGGTCTCACCTCGCCATGGTTCGTCTGCCTCTGCAGTGCGTCCTCTGGGGCTGCTTGCTGACCGCTGTCCATCCAGAACCACCCACTGCATGCAGAGAAAAACAGTACCTAATAAACAGTCAGTGCTGTTCTTTGTGCCAGCCAGGACAGAAACTGGTGAGTGAC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCEBP1.1 CAT X84213 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GACGCCCATTCCTGGAAACTGGGCTCCCACTCAGCCCCTGGGAGCAGCAGCCGCCAGCCCCTCGGGACCTCCATCTCCACCCTGCTGAGCCACCCGGGTTGGGCCAGGATCCCGGCAGGCTGATCCCGTCCTCCACTGAGACCTGAAAAATGGCTTCGGGGCAAGGCCCAGGTCCTCCCAGGCAGGAGTGCGGAGAGCCTGCCCTGCCCTCTGCTTCTGAGGAGCAGGTAGCCCAGGACACAGAGGAGGTTTTCCGCAGCTACGTTTTTTACCGCCATCAGCAGGAACAGGAGGCTGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSCFGR23.1 CAT X52207 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGGAACCTGGAATGGGCTGTGTGTTCTGCAAGAAATTGGAGCCGGTGGCCACGGCCAAGGAGGATGCTGGCCTGGAAGGGGACTTCAGAAGCTACGGGGCAGCAGACCACTATGGGCCTGACCCCACTAAGGCCCGGCCTGCATCCTCATTTGCCCACATC MMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCGJP.1 CAT X52947 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAGTACCAAACAGCAGCGGAGTTTTAAACTTTAAATAGACAGGTCTGAGTGCCTGAACTTGCCTTTTCATTTTACTTCATCCTCCAAGGAGTTCAATCACTTGGCGTGACTTCACTACTTTTAAGCAAAAGAGTGGTGCCCAGGCAACATGGGTGACTGGAGCGCCTTAGGCAAACTCCTTGACAAGGTTCAAGCCTACTCAACTGCTGGAGGGAAGGTGTGGCTGTCAGTACTTTTCATTTTCCGAATCCTGCTGCTGGGGACAGCGGTTGAGTCAGCCTGGGGAGATGAGCAGTCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCGMPPDE.1 CAT X94354 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCTGCTTGACCTTTGGAAGTCCTATGAGGGACCATTTACGGTTTCCTCAGTAATTTCCACCAGGATGAATTTCCTTCTCATCACTCTGCCTCAGGTAGTGCTCTGAAGGTCGTCCTTTCTGAACAAACGCAGCAAAGCAAGCCACACCATGGGTGAGATCAACCAAGTTGCCGTGGAGAAATACCTGGAGGAGAACCCTCAGTTTGCCAAGGAGTACTTTGACAGGAAGTTGCGGGTGGAGGTGCTGGGAGAAATCTTCAAGAACAGCCAGGTGCCAGTCCAGTCCAGCATGTCCTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSCHM.1 CAT X78121 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAATAGTCACATGACACGTTTCCCGTCAAGATGGCGGATACTCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCATTGCAGCTGCATGTTCAAGAAGTGGCCGGAGAGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 HSCHYPRO.1 CAT X71877 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCTGCCACGATGTTGCTGCTCAGCCTGACCCTAAGCCTGGTTCTCCTCGGCTCCTCCTGGGGCTGCGGCATTCCTGCCATCAAACCGGCACTGAGCTTCAGCCAGAGGATTGTCAACGGGGAGAATGCAGTGTTGGGCTCCTGGCCCTGGCAGGTGTCC ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 265 HSCIITA.1 CAT X74301 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGATGAGGCTGTGTGCTTCTGAGCTGGGCATCCGAAGGCATCCTTGGGGAAGCTGAGGGCACGAGGAGGGGCTGCCAGACTCCGGGAGCTGCTGCCTGGCTGGGATTCCTACACAATGCGTTGCCTGGCTCCACGCCCTGCTGGGTCCTACCTGTCAGAGCCCCAAGGCAGCTCACAGTGTGCCACCATGGAGTTGGGGCCCCTAGAAGGTGGCTACCTGGAGCTTCTTAACAGCGATGCTGACCCCCTGTGCCTCTACCACTTC ...................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 283 HSCKIIB.1 CAT X16937 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTCCCCCCACCCCACTTCGCCTGCCGCGGTCGGGTCCGCGGCCTGCGCTGTAGCGGTCGCCGCCGTTCCCTGGAAGTAGCAACTTCCCTACCCCACCCCAGTCCTGGTCCCCGTCCAGCCGCTGACGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTGAAGTGGATGAAGACTACATCCAGGACAAATTTAATCTTACTGGACTCAATGAGCAGGTCCCTCACTATCGACAAGCTCTA .....................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCLCN3.1 CAT X78520 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GATAGTTTTCGCTGTGTCAGGCTTTCTTCGGTGGAGCTCCGAGGGTAGCTAGGTTCTAGGTTTGAAACAGATGCAGAATCCAAAGGCAGCGCAAAAAACAGCCACCGATTTTGCTATGTCTCTGAGCTGCGAGATAATCAGACAGCTAAATGGAGTCTGAGCAGCTGTTCCATAGAGGCTACTATAGAAACAGCTACAACAGTATAACAAGTGCAAGTAGTGATGAGGAACTTTTAGATGGAGCAGGTGTTATTATGGACTTTCAAACATCTGAAGATGACAATTTATTAGATGGTGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCLCN5GN.1 CAT X91906 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTCACTCTCATCTGTTGCTTTCCATTCACACTGCCTTTAGCCACTCATCATTTTGTGCCTACACCACAGAAACCTCTGAATGTAATGGATGTTCCTACCAGAGGACAAGTCGTACAATGGTGGAGGAATAGGTTCTTCAAATAGGATCATGGACTTCTTGGAGGAGCCAATCCCTGGTGTAGGGACCTATGATGATTTCAATACAATTGATTGGGTGAGAGAGAAGTCTCGAGACCGGGATAGGCACCGAGAGATTACCAATAAAAGCAAAGAGTCAACATGGGCCTTAATTCACAGT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSCLPPMR.1 CAT Z50853 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GACCGGGGCGTGCGGAGGGATGTGGCCCGGAATATTGGTAGGGGGGGCCCGGGTGGCGTCATGCAGGTACCCCGCGCTGGGGCCTCGCCTCGCCGCTCACTTTCCAGCGCAGCGGCCGCCGCAGCGGACACTCCAGAACGGCCTGGCCCTGCAGCGGTGCCTGCACGCG ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCMRF35A.1 CAT X66171 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTCCAGCCTCAGACCTGAGACAGGGCTGGACAAGGAAGCAGAGAGCAGAAGAAAAGCAGAAGCGAAGCTCAGATCTGCTGGGAGGAAGATTACATTTTGTCCCCTCCTGGGGTCTTGCACAGTGGCAGGTGACATTCGTGTTACAGGAATGACTGCCAGGGCCTGGGCCTCGTGGCGGTCTTCAGCTCTGCTCCTCCTGCTTGTCCCAGGCTATTTTCCTCTGAGCCACCCCATGACCGTGGCGGGCCCCGTGGGGGGATCCCTGAGTGTGCAGTGTCGCTATGAGAAGGAACACAGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCMYBA1.1 CAT X52125 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCCTCCTCTTTCTCCTGAGAAACTTCGCCCCAGCGGTGCGGAGCGCCCTGCGCAGCCGGGGAGGGACGCAGGCAGGCGGCGGGCAGCGGGAGGCGGCAGCCCGGTCGGTCCCCGCGGCTCTCGCGGAGCCCCGCCGCCCGCCGCGCCATGGCCCGAAGACCCCGGCACAGCATATATAGCAGTGACGAGGATGATGAGGACTTTGAGATGTGTGACCATGACTATGATGGGCTGCTTCCCAAGTCTGGAAAGCGTCACTTGGGGAAAACAAGGTGGACCCGGGAAGAGGATGAAAAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233 HSCOL1A1.1 CAT X07884 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCACGCGGAGTGTGAGGCCACGCATGAGCGGACGCTAACCCCCTCCCCAGCCACAAAGAGTCTACATGTCTAGGGTCTAGACATGTTCAGCTTTGTGGACCTCCGGCTCCTGCTCCTCTTAGCGGCCACCGCCCTCCTGACGCACGGCCAAGAGGAAGGCCAAGTCGAGGGCCAAGACGAAGACATCCCACCAATCACCTGCGTACAGAACGGCCTCAGGTACCATGACCGA ...................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCOL4A4.1 CAT X81053 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGTGGGGTGGCAAGGCGGCACTCCTGGCGCTGCGGGCGTCCCCACAGGAACAGACTTTGACCCAGAACACAGAACCTCACTTGTCAACAAGAACCTTCTGGAAGAGAAGACTGGCAGAATATTTTTTAAGTACTAAGACTTGCCTGCGATGTGGTCTCTGCACATAGTACTAATGAGGTGCTCCTTCAGATTGACCAAGTCCTTGGCCACAGGTCCCTGGTCACTTATACTCATTCTCTTTTCTGTACAATATGTATATGGGAGTGGAAAGAAATACATTGGTCCTTGTGGAGGAAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 HSCOLA1X.1 CAT X60382 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATCCATCTGAGAATATGCTGCCACAAATACCCTTTTTGCTGCTAGTATCCTTGAACTTGGTTCATGGAGTGTTTTACGCTGAACGATACCAAACGCCCACAGGCATAAAAGGCCCACTACCCAACACCAAGACACAGTTCTTCATTCCCTACACCATAAAGAGT ...............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 HSCOMH362.1 CAT X56210 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAAGTATTTTTAGTTATATAAGATTGGAACTACCAAGCATGTGGCTCCTGGTCAGTGTAATTCTAATCTCACGGATATCCTCTGTTGGGGGAGAAGCAACATTTTGTGATTTTCCAAAAATAAACCATGGAATTCTATATGATGAAGAAAAATATAAGCCATTTTCCCAGGTTCCTACAGGGGAAGTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 HSCOX7AL.1 CAT X15822 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGTAACAGCCAAGATGCTGCGGAATCTGCTGGCTCTTCGTCAGATTGGGCAGAGGACGATAAGCACTGCTTCCCGCAGGCATTTTAAAAATAAAGTTCCGGAGAAGCAAAAACTGTTCCAGGAGGATGATGAAATTCCACTGTATCTAAAGGGTGGGGTAGCT .............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241 HSCOXVIA.1 CAT X15341 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTTTTTTTTTTTAGAAGAAATAATGTGGTAGTTGGTGTGTCCTCGGTTTCTCGGCTGCTGGGTCGGTCCCGCCCACAGCTGGGGCGGCCTATGTCGAGTGGCGCCCATGGCGAAGAGGGCTCAGCTCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGCAGTCAGCATGCTGAATGTGTACCTGAAGTCGCACCACGGAGAGCACGAGAGACCCGAGTTCATCGCC ...........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 HSCOXVII.1 CAT X16560 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAGAGCTTCCAGCGGCTATGTTGGGCCAGAGCATCCGGAGGTTCACAACCTCTGTGGTCCGTAGGAGCCACTATGAGGAGGGCCCTGGGAAGAATTTGCCATTTTCAGTGGAAAACAAGTGGTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATCTGCATTTGCT ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 176 HSCREBP1.1 CAT X15875 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCTGTGATAAGTTATTCAACTTATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGTACTGCGCCTGGATGTGGCCAGCGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAG ..........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSCRFBP.1 CAT X58022 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GACCTCCGGAGCAGACAGCACAGCAGCTGCAGAGGCAAGGCCAGCATGTCGCCCAACTTCAAACTTCAGTGTCACTTCATTCTCATCTTCCTGACGGCTCTAAGAGGGGAAAGCCGGTACCTAGAGCTGAGGGAAGCGGCGGACTACGATCCTTTCCTGCTCTTCAGCGCCAACCTGAAGCGGGACGTGGCTGGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223 HSCRISP1G.1 CAT X95237 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCACAAATACACTACATAGAGAAAGGCTTGGTTCTTATCAGGACACAAATTTAAAGGCTGTGTGGACTTGGGGATGGAAATTAAACACCTCTTGTTTTTGGTTGCTGCTGCTTGCTTACTGCCTATGTTGTCCATGAAAAAGAAATCAGCTAGAGACCAATTTAATAAGCTCGTCACCGACTTGCCAAATGTACAAGAAGAGATCGTTAATATACACAACGCC .........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCRKL.1 CAT X59656 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGAAAGTGCTGGCCCAGCCCTCTGAGCGCTCCTCGAGGTGTGCGAGAGGCCCTTCCTCGGCCCCAAAGCCGTCTGCCGGGCTAAGGCGTGCAGAGCAGGCGAGGACAGCCGCCGCCCCTACCGCCGCAGAGTCCCCGGTCCAACACCATGTCCTCCGCCAGGTTCGACTCCTCGGACCGCTCCGCCTGGTATATGGGGCCGGTGTCTCGCCAGGAGGCGCAGACCCGGCTCCAGGGCCAGCGCCACGGTATGTTCCTCGTCCGCGATTCTTCCACCTGCCCTGGGGACTATGTGCTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239 HSCRPMR.1 CAT X56214 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGACTTCTAGCCCCTGAACTTTCAGCCGAATACATCTTTTCCAAAGGAGTGAATTCAGGCCCTTGTATCACTGGCAGCAGGACGTGACCATGGAGAAGCTGTTGTGTTTCTTGGTCTTGACCAGCCTCTCTCATGCTTTTGGCCAGACAGACATGTCGAGGAAGGCTTTTGTGTTTCCCAAAGAGTCGGATACTTCCTATGTATCCCTCAAAGCACCGTTAACGAAGCCTCTCAAAGCC .........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 217 HSCTMRSU.1 CAT X70476 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGGTTTATCTCAAGGCCTGAGTAGCCGGTAACAAACGAGGGTTCCCGGGATTGGACCGACGCACCATGCCTCTGCGACTTGATATCAAAAGAAAGCTAACTGCTAGATCTGATCGAGTTAAGAGTGTGGATCTGCATCCTACAGAGCCATGGATGTTGGCAAGTCTTTACAATGGCAGTGTGTGTGTTTGGAATCATGAAACACAGACACTGGTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSCTPSYN.1 CAT X52142 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTATCCGCGCGCGTCGCCGGCCCAGTCCTGTCGCTGACGGGAGGATCTGAAGCCGGCCGCAGGTCAAAGAGTAAAATGAAGTACATTCTGGTTACTGGTGGTGTTATATCAGGAATTGGAAAAGGAATCATTGCCAGCAGTGTGGGCACAATACTCAAGTCATGTGGTTTACATGTAACTTCAATCAAAATTGACCCCTACATTAACATTGATGCAGGAACATTC ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCXYP.1 CAT X14329 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGACGGACAGCTGGGAACGTCTTCCAATTTGGACTGGTGTTTACAAGCGGGAAGCTAGGTGGACCTTGGATTTTGGCGGGTGAAGAGGCTAGGTTGTTTAAGGAGGTGGGGCGCGTTTCAGTGGCTCTCTTTGAAAAAGCCCAGCAAGATGTCAGACCTGCTCTCAGTCTTCCTCCACCTCCTCCTTCTCTTCAAGTTGGTTGCCCCGGTGACCTTTCGCCACCACCGCTATGATGATCTTGTGCGGACGCTGTACAAGGTGCAAAACGAATGCCCCGGCATCACGCGGGTCTACAGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199 HSCYCHASS.1 CAT X87843 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCGGGCTGAAACAGGCGCCTGCGAGAGTCTGTAGGAGGGAAACCGCCATGGACGATCAGGGTTGCCCTCGGTGTAAGACCACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATGTGTGCGGACACACTCTCTGTGAAAGTTGTGTAGATTTACTGTTTGTGAGAGGAGCTGGAAACTGCCCTGAGTGTGGT .................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCYCLA.1 CAT X68303 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGCGAGCGGGCGGGCTGGTAGGCTGGCCTGGGCTGCGACCGGCGGCTACGACTATTCTTTGGCCGGGTCGGTGCGAGTGGTCGGCTGGGCAGAGTGCACGCTGCTTGGCGCCGCAGGCTGATCCCGCCGTCCACTCCCGGGAGCAGTGATGTTGGGCAACTCTGCGCCGGGGCCTGCGACCCGCGAGGCGGGCTCGGCGCTGCTAGCATTGCAGCAGACGGCGCTCCAAGAGGACCAGGAGAATATCAACCCGGAAAAGGCAGCGCCCGTCCAACAACCGCGGACCCGGGCCGCGCTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSCYTOK20.1 CAT X73501 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGACTGTGGTGCCAATCCTAGTGACATGTCAGCAGAGGAGGAGTTTCTTGCCTGTGGACTTCATAAAAGGCTAGCTCAACACCCTCCATGAGACACACTCTGCCCCAACCATCCTGAAGCTACAGGTGCTCCCTCCTGGAATCTCCAATGGATTTCAGTCGCAGAAGCTTCCACAGAAGCCTGAGCTCCTCCTTGCAGGCCCCTGTAGTCAGTACAGTGGGCATGCAGCGCCTCGGGACGACACCCAGCGTTTATGGGGGTGCTGGAGGCCGGGGCATCCGCATCTCCAACTCCAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 HSCYTVIB.1 CAT X54473 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACATTGAGCTGCAGGTTGAATCCGGGGTGCCTTTAGGATTCAGCACCATGGCGGAAGACATGGAGACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCCCCAACCAGAACCAGACTAGAAACTGCTGGCAGAACTACCTGGACTTCCACCGCTGTCAGAAGGCAATGACCGCTAAAGGAGGCGAT ...............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDAP1.1 CAT X76105 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCCGGCTCGCGCGGCCCCGGCCGCCCACGCCGCGCGTCGTTCTCCCGCCCGCTCGCTCCCCGGCGCTCACACCTGAGCTCACTCGCGCACGCCCGCCCGGCCCGAGAACCGCGCCGCCGCCTCGGCCCCGCGGAAGCCCCGCCGCGCCATGTCTTCGCCTCCCGAAGGGAAACTAGAGACTAAAGCTGGACACCCGCCCGCCGTGAAAGCTGGTGGAATGCGAATTGTGCAGAAACACCCACATACAGGAGACACCAAAGAAGAGAAAGACAAGGATGACCAGGAATGGGAAAGCCCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDAPK.1 CAT X76104 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACAGCGCTCCGGAGGGACCGGGGGAGCTCCCAGGCGCCCGGGACTGGAGACTGATGCATGAGGGGCCTACGGAGGCGCAGGAGCGGTGGTGATGGTCTGGGAAGCGGAGCTGAAGTCCCCTGGGCTTTGGTGAGGCGTGACAGTTTATCATGACCGTGTTCAGGCAGGAAAACGTGGATGATTACTACGACACCGGCGAGGAACTTGGCAGTGGACAGTTTGCGGTTGTGAAGAAATGCCGTGAGAAAAGTACCGGCCTCCAGTATCCCGCCAAATTCATCAAGAAAAGGAGGACTAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDARC.1 CAT X85785 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTCTTCAGGCTCCCTGCTTTGTCCTTTTCCACTGTCCGCACTGCATCTGACTCCTGCAGAGACCTTGTTCTCCCACCCGACCTTCCTCTCTGTCCTCCCCTCCCACCTGCCCCTCAATTCCCAGGAGACTCTTCCGGTGTAACTCTGATGGCCTCCTCTGGGTATGTCCTCCAGGCGGAGCTCTCCCCCTCAACTGAGAACTCAAGTCAGCTGGACTTCGAAGATGTATGGAATTCTTCCTATGGTGTGAATGATTCCTTCCCAGATGGAGACTATGATGCCAACCTGGAAGCAGCT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDAUDI6.1 CAT X63522 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTGGTACTGAGCAGAGCGACGGGCTTAATTCGACCCAATCCAGGCCAGAGTCTTTCTCTCAGGGGCTTCCTCGTGCTCAGCTAATCCTCCGATCAATCCTTGGGAATCCCTGGGACCTCTTCGGTATCCCTACTCTCAGCCAGGGATCATGTCTTGGGCCGCTCGCCCGCCCTTCCTCCCTCAGCGGCATGCCGCAGGGCAGTGTGGGCCGGTGGGGGTGCGAAAAGAAATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGACGGCCCTGGCTGGATCCCGCAGCGGCGGCGGCG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDBLPRO.1 CAT X12556 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCCACTGTGCTAATGGAAGCACCACGGCAGCTTTGTTTGATAGAGATTTTTGGCTGCCGTTTTTAAATACTACCCAAGAAGCAGCTCGTATTTCATCAATGTTGCGTTGACAATTGGAAAAGAAAAGTGTAATTGCGTACAGGCGAAATGGCAGAAGCAAATCCCCGGAGAGGCAAGATGAGGTTCAGAAGGAATGCGGCTTCCTTCCCTGGGAACTTGCACTTGGTTTTGGTTTTACGTCCTACCAGCTTTCTTCAACGAACGTTCACAGACATTGGATTTTGGTTTAGTCAGGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 HSDBP5.1 CAT X63071 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCGTTCAATGATGTCTATGGCTGCTGATTCTTACACCGATTCTTACACTGACACATATACAGAGGCATATATGGTGCCACCTTTGCCTCCTGAAGAGCCCCCAACAATGCCACCGTTGCCACCTGAGGAGCCACCAATGACACCACCATTGCCTCCTGAGGAACCACCAGAGGGTCCAGCATTGCCCACTGAGCAGTCAGCATTAACAGCTGAAAATACT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDD2.1 CAT X51362 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCACTCTCCTCGGCCGGTCCCTGGCTCCCGGAGGCGGCCGCGCGTGGATGCGGCGGGAGCTGGAAGCCTCAAGCAGCCGGCGCCGTCTCTGCCCCGGGGCGCCCTATGGCTTGAAGAGCCTGGCCACCCAGTGGCTCCACCGCCCTGATGGATCCACTGAATCTGTCCTGGTATGATGATGATCTGGAGAGGCAGAACTGGAGCCGGCCCTTCAACGGGTCAGACGGGAAGGCGGACAGACCCCACTACAACTACTATGCCACACTGCTCACCCTGCTCATCGCTGTCATCGTCTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSDERMATA.1 CAT Z22865 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGGGAGCATGGACCTCAGTCTTCTCTGGGTACTTATGCCCCTAGTCACCATGGCCTGGGGCCAGTATGGCGATTATGGATACCCATACCAGCAGTATCATGACTACAGCGATGATGGGTGGGTGAATTTGAATCGGCAAGGCTTCAGCTACCAGTGT ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 HSDESMOG2.1 CAT Z26317 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCGAGGGTGCGATGGCGCGGACGCGGGACCGCGTACGCCTGCTGCTTCTCCTGATCTGCTTTAACGTTGGAAGTGGACTTCACTTACAGGTCTTAAGCACAAGAAATGAAAATAAGCTGCTTCCTAAACATCCTCATTTAGTGCGGCAAAAGCGCGCCTGG ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSDEUBIQ.1 CAT X91349 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGTGTGTGGAGAAGCTGCTGCCGGTGTCATGGCGGACGTGAGTGAGGAGGCGCTGCTGTCAGTATTACCGACGATCCGGGTCCCTAAGGCTGGAGACCGGGTCCACAAAGACGAGTGCGCCTTCTCCTTCGACACGCCGGAGTCTGAAGGGGGCCTCTACGTCTGTATGAACACGTTT .............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252 HSDKRNA.1 CAT X62535 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCGGTCGCAGCTGAAGCAGGCCTACCCTCTGAAGAGGTCCAAGCAACGGAAGTACTACTACGAAGCTGCCTTTCTGGCCATCCTTGAGAAAAATAGACAGATGGCCAAGGAGAGGGGCCTAATAAGCCCCAGTGATTTTGCCCAGCTGCAAAAATACATGGAATACTCCACCAAAAAGGTCAGTGATGTCCTAAAGCTCTTCGAGGATGGCGAGATGGCTAAATATGTCCAAGGAGATGCCATTGGGTAC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDMD.1 CAT X06293 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CATGTTCTAATTAGTCTCTGGAGGACATTCATGGACAATTCACTGTTCATTAATCTATCGTCTTCCTTTAACTTTGATTTGTTCATTATCCTTTTAGAGTCTCAAATATAGAAACCAAAAATTGATGTGTAGTGTTAATGTGCTTACAGATGTTGATACCACCTATCCAGATAAGAAGTCCATCTTAATGTACATCACATCACTCTTCCAAGTTTTGCCTCAACAAGTGAGCATTGAAGCCATCCAGGAAGTGGAAATGTTGCCAAGGCCACCTAAAGTGACTAAAGAAGAACATTTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 HSDOCKP.1 CAT X06272 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGCCCGGTTCGCCGCCGCTTCCTGCTGCCGCCATGCTCGACTTCTTCACCATTTTCTCCAAGGGCGGGCTTGTGCTCTGGTGCTTCCAGGGCGTTAGCGACTCATGCACCGGACCCGTTAACGCGTTGATTCGTTCCGTGCTGCTGCAGGAACGGGGAGGTAACAACTCCTTCACCCATGAG .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDOPD1.1 CAT X55758 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATGTTGGTGAGGCCCTCTGCCAGGGAAGCAATCTGGCTGTGCAAAGTGCTGCCTGGTGGGGAGGACTCCTGGAAATCTGACTGACCCCTATTCCCTGCTTAGGAACTTGAGGGGTGTCAGAGCCCCTGATGTGCTTTCTCTTAGGAAGATGAGGACTCTGAACACCTCTGCCATGGACGGGACTGGGCTGGTGGTGGAGAGGGACTTCTCTGTTCGTATCCTCACTGCCTGTTTCCTATCGCTGCTCATCCTGTCCACGCTCCTGGGGAACACGCTGGTCTGTGCTGCCGTTATCAGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 HSDOXBR.1 CAT Z28339 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCTAGGACACCTTTCTAAAAAGACTCCCTGTGGTGTTCAGAATCACTCCTACAGTCAGGTTCTCCACAATGGATCTCAGTGCTGCAAGTCACCGCATACCTCTAAGTGATGGAAACAGCATTCCCATCATCGGACTTGGTACCTACTCAGAACCTAAATCGACCCCTAAGGGAGCCTGTGCAACATCGGTGAAGGTTGCTATTGACACAGGGTACCGA .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDS33.1 CAT X89059 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAGAGCCAACAGCCTGCAACTCTTGTCACCCCAGCCTGGAGAACAGCTCCCTCCAGAGATGACTGTGGCAAGATCTTCGGTCAAAGAGACCTCCAGAGAAGGCACCTCTTCCTTCCATACACGCCAGAAGTCTGAGGGTGGAGTGTATCATGACCCACACTCTGATGATGGCACAGCCCCCAAAGAAAATAGACACCTATACAATGATCCTGTGCCAAGGAGAGTTGGTAGCTTTTACAGAGTGCCATCTCCACGTCCAGACAATTCTTTCCATGAAAATATTAGTCATTCAGAGCAAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSDSC1AB.1 CAT X72925 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCTCCGGACTGTCTTCCAAACCAAGCTCAGCTGCATCAAGGTGGCAGCAGAATACCCTGTGCAAGTGCCAGCGTCTTCTTAGCCGCTCTGTGCATCCCAGGCTGCCCTGTTATCTGGCCACCGTCCCTGGCCATTGGGACTGCTTCTGATGGCTCTGGCCTCTGCTGCCCCAGGGAGCATCTTCTGTAAGCAGCTCCTTTTCTCTCTCCTGGTTTTAACATTACTTTGCGATGCTTGTCAGAAAGTTTATCTTCGAGTTCCTTCTCATCTTCAGGCTGAAACACTTGTAGGCAAAGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220 HSEDNMRN.1 CAT X55988 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCCCCTGAACCCCAGAACAACCAGCTGGATCAGTTCTCACAGGAGCTACAGGCCGGAGACTGGGAAACATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGGGCTTCTGGCTGTGGAGGGCTCACTCCATGTCAAACCTCCACAGTTTACCTGGGCTCAATGGTTTGAAACCCAGCACATCAATATGACCTCCCAGCAATGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 HSEF1AC.1 CAT X16869 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGA ...............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSEF1G.1 CAT X63526 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTTCTTTGCGGAATCACCATGGCGGCTGGGACCCTGTACACGTATCCTGAAAACTGGAGGGCCTTCAAGGCTCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACCAACCGCACCCCTGAATTTCTC ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSEGMBP.1 CAT Z26248 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCCCTGGAATGGCCTGCTCATGGACCGGCTTAAACAGAAGTACCAGAAGGAAGCAAGAAAGACAGGGTCTTTTAACATCCGAGGACCACATTCTTTATACTTTCCAAATCATCACCTGCCCCATGCAACTTACAGGGATAAAGCCAAGATGAAACTCCCCTTACTTCTGGCTCTTCTATTTGGGGCAGTTTCTGCTCTTCATCTAAGGTCTGAGACTTCCACCTTTGAGACCCCTTTGGGTGCTAAGACGCTGCCTGAGGATGAGGAGACACCAGAGCAGGAGATGGAGGAGACCCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSEHK1.1 CAT X95425 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCCTACATTTGGAGGAGCCGCGTGTCAGAAGGCGTAGGACCCCAAGGGGGGACAAGGAGGACTCCCGAGTCTCCCTTCTCCGCTCTCCGAGACCGAAGAGGTGGACTGAGCCGCTCGGGACAGCGGCACCGGAGGAGGCTCGGAGAAGATGCGGGGCTCGGGGCCCCGGGGTGCGGGACACCGGCGGCCCCCAAGCGGCGGCGGCGACACCCCCATCACCCCAGCGTCCCTGGCCGGCTGCTACTCTGCACCTCGACGGGCTCCCCTCTGGACGTGCCTTCTCCTGTGCGCCGCACTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 HSEIF2BAS.1 CAT X95648 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGACGCCTATGGACGACAAGGAGTTAATTGAATACTTTAAGTCTCAGATGAAAGAAGATCCTGACATGGCCTCAGCAGTGGCTGCCATCCGGACGTTGCTGGAGTTCTTGAAGAGAGATAAAGGGGAGACAATCCAGGGTCTGAGGGCCAATCTCACC ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244 HSELF1B.1 CAT X60656 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCGAGGCGGGCGTCTTCGGTCATCTCCGGCGCTTCTAGGGCTGGTTCCCGTCATCTTCGGGAGCCGTGGAGCTCTCGGATACAGCCGACACCATGGGTTTCGGAGACCTGAAAAGCCCTGCCGGCCTCCAGGTGCTCAACGATTACCTGGCGGACAAGAGCTACATCGAGGGGTATGTGCCATCACAAGCAGATGTGGCAGTATTTGAAGCCGTGTCCAGCCCACCGCCTGCCGACTTGTGT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250 HSEMAP.1 CAT X73882 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGCTCACCTGTCTGGGCCGCTGGCCTGGGAGGCGGGGGCCGGCGGGAGCCAAGCCGAGGAAAGGGCGGAGCGGCTCTCCGGGCGCGTCATCGGAGCACCATGGCGGAGCTAGGAGCTGGCGGCGACGGCCACAGGGGCGGCGACGGCGCAGTGCGAAGCGAAACAGCACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCAC ....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 188 HSEMR1.1 CAT X81479 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAAAGTTTTTTTCTTTGAATGACAGAACTACAGCATAATGCGTGGCTTCAACCTGCTCCTCTTCTGGGGATGTTGTGTTATGCACAGCTGGGAAGGGCACATAAGACCCACACGGAAACCAAACACAAAGGGTAATAACTGTAGAGACAGTACCTTGTGCCCAGCTTATGCCACCTGCACCAATACG ......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 HSENOL.1 CAT X66610 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCGGATCTGAGCGAACGGAACGGGTGCGGGTGTTCAAGATGTCCATTCTCAAGATCATCCATGCCCGTGATATCTTTGAATCCCGTGGGAATCCAACTGTTGAGGTAGACCTTTACACTAACAAGGGTGGTCTGTTCGGAAGAGCTGCTGTTCCTAGCGGTGCCTCAACTGGAATTTATGAAGCTCTG .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSEP3A1.1 CAT X83857 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCGGAGTAGGGCGGCGGCTGCGCCCCGCACCATGGGGGCAGCCCAGCCCCAGCCGCGGTAAACGCCGACCTCCGCCGCCGCCCGCGCCCGTCTGCCCCCTCCCGCTGCGGCTCTCTGGACGCCATCCCCTCCTCACCTCGAAGCCAACATGAAGGAGACCCGGGGCTACGGAGGGGATGCCCCCTTCTGCACCCGCCTCAACCACTCCTACACAGGCATGTGGGCGCCCGAGCGTTCCGCCGAGGCGCGGGGCAACCTCACGCGCCCTCCAGGGTCTGGCGAGGATTGCGGATCGGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSEP4PSGN.1 CAT X97875 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGCAGGAGCAGAGCGAGCCTGGAGATTTGGGTGGCTGCCGTTGGTAAGTGGTTGCAATCCAGAGAGTGGGATTGAGTTCCTCCCTTGTCATGTTAGCATCCCATTTCCTGGGCGCGGGTCTAATGCCCTGCAGGTGGTCATTTCACTCATGGTGGCTTTGTCTCTCTTCTGCCATCTCCAGACTCAGCTTTGCACTCCAGGGCTGCGTACCACCAGCCACTGTCATGTTAACCCCTTCCCAGGCCAATGTGTCCTTGGTCTGGAGCCCAATCTGCTGGACAGCCTGGGACCGTCCATT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSEPMG50.1 CAT X64594 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGTGTGCCTCTGTCCTTTGCCACAAACATGAGGTTCACATTCCCTCTCATGGCTATAGTCCTGGAAATTGCCATGATTGTTTTATTTGGATTATTTGTTGAGTATGAAACGGACCAGACTGTTCTCGAGCAGCTCAACATCACCAAGCCAACAGACATGGGCATATTCTTTGAGTTA ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSERB2R.1 CAT X03363 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTCGGGGCCCCGGGCAGCCGCGCGCCCCTTCCCACGGGGCCCTTTACTGCGCCGCGCGCCCGGCCCCCACCCCTCGCAGCACCCCGCGCCCCGCGCCCTCCCAGCCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAGTGTGCACCGGCACAGACATGAAGCTGCGGCTCCCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSERBT1.1 CAT Y00479 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGGCCAAGTGCTGAGGCGGGTATCATGGGTGCTGTGCCCTAGGCCTGGGTGGCAGGGGGTGGGTGGCCTGTGGGTGTGCCGGGGGGGCCAGTGTGCCCACCCCAGTCTCTTGGCGTGCTGGAGGGCATCCTGGATGGAATTGAAGTGAATGGAACAGAAGCCAAGCAAGGTGGAGTGTGGGTCAGACCCAGAGGAGAACAGTGCCAGGTCACCAGATGGAAAGCGAAAAAGAAAGAACGGCCAATGTTCCCTGAAAAGCAGCATGTCAGGGTATATCCCTAGTTACCTGGACAAAGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 HSERF2.1 CAT X78992 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCCGCCCCAAGGGCTCCTCCCGACCTCCCGGCCTGCCGCTCCGGCCACTGCGGGATCCAGAAACATGTCGACCACACTTCTGTCCGCCTTCTACGATGTCGACTTCTTGTGCAAGACAGAGAAATCCCTGGCCAACCTCAACCTGAACAACATGCTGGACAAGAAGGCGGTGGGGACGCCTGTGGCCGCCGCCCCCAGCTCGGGCTTCGCGCCG ..................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSERV9.1 CAT X57147 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTACAGCAGGTTAAATATCTAGGCCTAATCTTAGCCAAAGGGACCAGGGCCCTCAGCAAGGAATGAATACAGCCTATACTGGCTTATCCTCGCCCTAAGACATTAAAACAGTTGAGGGAGTTCCTTGGAATTACCAGCTTTTGCCGACTATGGATCCCTGGATACAGCGAGACAGCCAGGCCCCTCTAATCAAGGAAACCCAGAGGGCAAATACTCATCTAGTTGAGTGGGAACCAGAGGCAGAAACAACCTTCAAAACCTTAAAGCAGGCTCTAGTACAAGCTCCAGCTTTAAGCCTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSET1R.1 CAT X61950 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACCCTCGCTTTCTCCGGCTTCCTCTGGCCCAGGCGCCGCGCGGACCCGGCAGCTGTCTGCGCACGCCGAGCTCCACGGTGAAAAAAAAAGTGAAGGTGTAAAAGCAGCACAAGTGCAATAAGAGATATTTCCTCAAATTTGCCTCAAGATGGAAACCCTTTGCCTCAGGGCATCCTTTTGGCTGGCACTGGTTGGATGTGTAATCAGTGATAATCCTGAGAGATACAGCACAAATCTAAGCAATCATGTGGATGATTTCACCACTTTTCGTGGCACAGAGCTCAGCTTCCTGGTTACC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 208 HSET2RNA.1 CAT X55177 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGACGCTGGCAACAGGCACTCCCTGCTCCAGTCCAGCCTGCGCGCTCCACCGCCGCTATGGTCTCCGTGCCTACCACCTGGTGCTCCGTTGCGCTAGCCCTGCTCGTGGCCCTGCATGAAGGGAAGGGCCAGGCTGCTGCCACCCTGGAGCAGCCAGCGTCCTCATCTCATGCCCAAGGCACCCACCTTCGGCTTCGCCGTTGCTCC ..........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 260 HSET3AA.1 CAT X52001 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAACCCCCACAGCTGGAGGGCGAGGCCAGCTGTACCCGGCCCCAGTGCCCTTTCGCGGCCACAAGCGGCCGTCCTCCTGGTCCGGTGCTCCGGCGCCTGATCTAGGTTCATGGAGCCGGGGCTGTGGCTCCTTTTCGGGCTCACAGTGACCTCCGCCGCAGGATTCGTGCCTTGCTCCCAGTCTGGGGATGCTGGCAGGCGCGGCGTGTCCCAGGCCCCCACTGCAGCCAGATCTGAGGGGGACTGTGAAGAGACTGTG ..............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSETFBS.1 CAT X71129 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACCCTGTAAGTGGCTGCGGCGGGAAGATGGCGGAGCTGCGCGTGCTCGTAGCTGTCAAGAGGGTCATCGACTACGCCGTGAAGATCCGAGTGAAGCCTGACAGGACCGGTGTGGTCACGGATGGTGTGAAGCACTCCATGAACCCCTTCTGTGAGATCGCGGTGGAGGAGGCTGTG ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSEVMHC.7 CAT X87344 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTGGTTGTCAATCTGAGGAGTTTCCAATCCTGGGGAAGCCAGAAAAACAGCGATTTATACTCTTAATGGGTACTTTCTGACTGAATTTTATGAGCTCATTCTGAAGAGGCTGACGATTTTACTATCTCATTTTTTTCCTTTCTCCAGAATGGGTTCTGGGTGGGTCCCCTGGGTGGTGGCTCTGCTAGTGAATCTGACCCGACTGGATTCCTCCATGACTCAAGGCACAGACTCTCCAGAAGATTTTGTGATTCAGGCAAAGGCTGACTGTTACTTCACCAACGGGACAGAAAAGGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 HSEZRIN.1 CAT X51521 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGCAGGGCGGGCGGGCGCTCTAAGGGTTCTGCTCTGACTCCAGGTTGGGACAGCGTCTTCGCTGCTGCTGGATAGTCGTGTTTTCGGGGATCGAGGATACTCACCAGAAACCGAAAATGCCGAAACCAATCAATGTCCGAGTTACCACCATGGATGCAGAGCTGGAGTTTGCAATCCAGCCAAATACAACTGGAAAACAGCTTTTTGATCAGGTGGTAAAGACTATCGGCCTCCGGGAAGTGTGGTACTTTGGCCTCCACTATGTG .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 287 HSFAA.1 CAT X51728 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCCTAGCCAAGACCGAGGATAGGTGTGGCCATTGGCGACCAGATCCTGGACCTCAGCATCATCAAGCACCTCTTTACTGGTCCTGTCCTCTCCAAACACCAGGATGTCTTCAATCAGCCTACACTCAACAGCTTCATGGGCCTGGGTCAGGCTGCCTGGAAGGAGGCGAGAGTGTTCTTGCAGAACTTGCTGTCTGTGAGCCAAGCCAGGCTCAGAGATGACACCGAACTTCGGAAGTGTGCATTCATCTCCCAGGCTTCTGCCACGATGCACCTTCCAGCCACC .........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSFACC2.1 CAT X66894 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTTGGCGTTTTGGTTCTTTTTGTTCATTGAGCGCAGGCAGCTATGTCTTCTTCAAAGGAGAGGAGCAAAGCTTTAATGTGTGCCGACCATTTCCTTCAGTGCTGGACAGGCTGCTGTGAAGGGACATCACCTTTTCGCTTTTTCCAAGATGGCTCAAGATTCAGTAGATCTTTCTTGTGATTATCAGTTTTGGATGCAGAAGCTTTCTGTATGGGATCAGGCTTCCACTTTGGAAACCCAGCAAGACACCTGTCTTCACGTGGCTCAGTTCCAGGAGTTCCTAAGGAAGATGTATGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 188 HSFCREC.1 CAT X54150 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCACAGATCTTGGAACGAGACGACCTGCTGTCAGCACGATGGACCCCAAACAGACCACCCTCCTGTGTCTTGTGCTCTGTCTGGGCCAGAGGATTCAGGCACAGGAAGGGGACTTTCCCATGCCTTTCATATCTGCCAAATCGAGTCCTGTGATTCCCTTGGATGGATCTGTGAAAATCCAGTGCCAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 205 HSFCRIB.1 CAT X14355 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCAATATCTTGCATGTTGACAGATTTCACTGCTCCCACCAGCTTGGAGACAACATGTGGTTCTTGACAACTCTGCTCCTTTGGGTTCCAGTTGATGGGCAAGTGGACACCACAAAGGCAGTGATCACTTTGCAGCCTCCATGGGTCAGCGTGTTCCAAGAGGAAACCGTAACCTTGCACTGTGAGGTGCTCCATCTGCCTGGG .......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSFGFR2MR.1 CAT Z71929 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAGAGCCACCAACCAAATACCAAATCTCTCAACCAGAAGTGTAC ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 HSFIBLP.1 CAT Z36531 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCACTCCCTGCTGGGTGAGCAGCACTGTAAAGATGAAGCTGGCTAACTGGTACTGGCTGAGCTCAGCTGTTCTTGCCACTTACGGTTTTTTGGTTGTGGCAAACAATGAAACAGAGGAAATTAAAGATGAAAGAGCAAAGGATGTCTGCCCAGTGAGACTAGAAAGCAGAGGGAAATGCGAA .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253 HSFNRB.1 CAT X07979 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCCGCCAAAACCTGCGCGGATAGGGAAGAACAGCACCCCGGCGCCGATTGCCGTACCAAACAAGCCTAACGTCCGCTGGGCCCCGGACGCCGCGCGGAAAAGATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGTTTGCTGTGTGTTTGCTCAAACAGATGAAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTGGTGCACAAAT .......................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 HSFSTHR.1 CAT X68044 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGATGGATGCATAATTATGGCCCTGCTCCTGGTCTCTTTGCTGGCATTCCTGAGATTGGGCTCAGGATGTCATCATCGGATCTGTCACTGCTCTAACAGGGTTTTTCTCTGCCAAGAGAGCAAGGTGACAGAGATTCCTTCTGACCTCCCGAGGAATGCCATTGAA ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSFUR.1 CAT X17094 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCACCCTCCCGAGCCCTGCCCGTCTCGGCCCCATGCCCCCACCAGTCAGCCCCGGGCCACAGGCAGTGAGCAGGCACCTGGGAGCCGAGGCCCTATGACCAGGCCAAGGAGACGGGCGCTCCAGGGTCCCAGCCACCTGTCCCCCCCATGGAGCTGAGGCCCTGGTTGCTATGGGTGGTAGCAGCAACAGGAACCTTGGTCCTGCTAGCAGCTGATGCTCAGGGCCAGAAGGTCTTCACCAACACGTGGGCTGTGCGCATCCCTGGAGGCCCAGCGGTGGCCAACAGTGTGGCACGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243 HSG1112.1 CAT X77474 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGTACGTCACTGCTCTGCGCCGGAAGACCCTATTTTCAGGGTTCTCTTCCCTCCATTCCTACCCCTTCCCCGGTACCATAAAATCCCGGGATATGAGCTGGAAGAGGCATCACCTGATCCCGGAGACCTTTGGAGTTAAGAGGCGGCGGAAGCGAGGGCCTGTGGAGTCGGATCCTCTTCGGGGTGAGCCAGGGTCGGCGCGCGCGGCTGTCTCAGAACTCATGCAGCTGTTCCCGCGAGGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSG13G.1 CAT X98053 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCGTCTCCTGGTTGGGGGGTGGGGGGGAAAGATGGCGGACCTGATGCTGCTCAGCGAGATTGCTGACCCGACGCGTTTCTTCACCGACAACCTGCTTAGCCCGGAGGACTGGGGTCTGCAGAACAGCACCTTGTATTCTGGCCTAGATGAAGTGGCCGAGGAGCAGACGCAGCTCTTCCGT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSG7A.1 CAT X59303 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCGCCCACCGTCTCTGCCCGCTCGACTCCTCCGCCCGGGCCGCTCGGCGGTCCAGCCGCGGCCGGCGCCTGGCTGTGAGGTGGATTCCCGGCCCAGTCTGACCATCTCCCTCCAGTTTTTCCACTTCGTTCGGACCTTCTCATAACTATGTCCACCCTCTACGTCTCCCCTCACCCAGATGCCTTCCCCAGCCTCCGAGCCCTCATAGCCGCTCGCTATGGGGAGGCTGGGGAGGGTCCCGGATGGGGAGGAGCCCACCCCCGCATCTGTCTCCAGCCACCCCCGACTAGCAGGACT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 HSG9A.1 CAT X69838 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCCCCGGTCCCTGAGAAGCGGCCCCCTGAAATACAGCATTTCCGCATGAGTGATGATGTCCACTCACTGGGAAAGGTGACCTCAGATCTGGCCAAAAGGAGGAAGCTGAACTCAGGAGGTGGCCTGTCGGAGGAGTTAGGTTCTGCCCGGCGTTCAGGAGAAGTGACCCTGACGAAAGGGGACCCCGGGTCCCTG ...............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGAA.1 CAT Y00839 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGACCTCGGTGACGCGAAGGACCCCGGCCACCTCTAGGTTCTCCTCGTCCGCCCGTTGTTCAGCGAGGGAGGCTCTGGGCCTGCCGCAGCTGACGGGGAAACTGAGGCACGGAGCGGGCCTGTAGGAGCTGTCCAGGCCATCTCCAACCATGGGAGTGAGGCACCCGCCCTGCTCCCACCGGCTCCTGGCCGTCTGCGCCCTCGTGTCCTTGGCAACCGCTGCACTCCTGGGGCACATCCTACTCCATGATTTCCTGCTGGTTCCCCGAGAGCTGAGTGGCTCCTCCCCAGTCCTGGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGABAAA1.1 CAT X14766 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCGAGGACGCCCCTCTGCTCTGGCGCGCCCGGACTCGGACTCGCAGACTCGCGCTGGCTCCAGTCTCTCCACGATTCTCTCTCCCAGACTTTTCCCCGGTCTTAAGAGATCCTGTGTCCAGAGGGGGCCTTAGCTGCTCCAGCCCGCGATGAGGAAAAGTCCAGGTCTGTCTGACTGTCTTTGGGCCTGGATCCTCCTTCTGAGCACACTGACTGGAAGAAGCTATGGACAGCCGTCATTACAAGATGAACTTAAAGACAATACCACTGTCTTCACCAGGATTTTGGACAGACTCCTA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGABAAS.1 CAT X15376 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAGCAATCCATCTCCCCAGTGAAGGACCTACTAGAGGCAGGTGGGGGGAGCCACCATCAGATCATCAAGCATAAGAATAATACAAAGGGGAGGGATTCTTCTGCAACCAAGAGGCAAGAGGCGAGAGAAGGAAAAAAAAAAAAAAAGCGATGAGTTCACCAAATATATGGAGCACAGGAAGCTCAGTCTACTCGACTCCTGTATTTTCACAGAAAATGACGGTGTGGATTCTGCTCCTGCTGTCGCTCTACCCTGGCTTCACTAGCCAGAAATCTGATGATGACTATGAAGATTATGCT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSGACNMTS.1 CAT Z49878 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGCGGCGCGCGATCGAGGTCGGGTCGCCGTCCAGCCTGCAGCATGAGCGCCCCCAGCGCGACCCCCATCTTCGCGCCCGGCGAGAACTGCAGCCCCGCGTGGGGGGCGGCGCCCGCGGCCTACGACGCAGCGGACACGCACCTGCGCATCCTGGGCAAGCCGGTGATGGAGCGCTGGGAGACCCCCTATATG ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSGAGMR.1 CAT X54199 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCGGGCAAGCGGGAACCAGGTGGCCACCCGGTGTCGGTTTCATTTTCCTTTGGAATTTCTGCTTTACAGACAGAACAATGGCAGCCCGAGTACTTATAATTGGCAGTGGAGGAAGGGAACATACGCTGGCCTGGAAACTTGCACAGTCTCATCATGTCAAACAAGTGTTGGTTGCCCCAGGAAACGCAGGCACTGCCTGCTCTGAAAAGATTTCAAATACCGCCATC ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSGAPDR.1 CAT X01677 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTCGGCTGGCGACGCAAAAGAAGATGCGGCTGACTGTCGAGCCACATCGCTCAGACACCATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTAACTCTGGTAAAGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTTCCAATATGAT ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGBGASIA.1 CAT X74570 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACTTGGGAGCTGACTGTGCTGGAGGTGACAGGCTTTGCGGGGTCCGCCTGTGTGCAGGAGTCGCAAGGTCGCTGAGCAGGACCCAAAGGTGGCCCGAGGCAGCCGGGATGACAGCTCTCCCCAGGAATCCTGCTGCCTGCTGAGAAACATGGTCAGCAAGTCCCGCTGGAAGCTCCTGGCCATGTTGGCTCTGGTCCTGGTCGTCATGGTGTGGTATTCCATCTCCCGGGAAGACAGTTTTTATTTTCCCATCCCAGAGAAGAAGGAGCCGTGCCTCCAGGGTGAGGCAGAGAGCAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238 HSGCSAB.1 CAT X66533 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCCCCCCCGCCGCTGCCGCCTCTGCCTGGGTCCCTTCGGCCGTACCTCTGCGTGGGGGCTGCCTCCCCGGCTCCCGGTGCAGACACCATGTACGGATTTGTGAATCACGCCCTGGAGTTGCTGGTGATCCGCAATTACGGCCCCGAGGTGTGGGAAGACATCAAAAAAGAGGCACAGTTAGATGAAGAAGGACAGTTTCTTGTCAGAATAATATATGATGACTCCAAAACTTATGAT ........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGEBCMA.1 CAT Z29574 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCCCCGTAAGAACCCACGAAGCAGGCGAAGTTCATTGTTCTCAACATTCTAGCTGCTCTTGCTGCATTTGCTCTGGAATTCTTGTAGAGATATTACTTGTCCTTCCAGGCTGTTCTTTCTGTAGCTCCCTTGTTTTCTTTTTGTGATCATGTTGCAGATGGCTGGGCAGTGCTCCCAAAATGAATATTTTGACAGTTTGTTGCATGCTTGCATACCTTGTCAACTTCGATGTTCTTCTAATACTCCTCCTCTAACATGTCAGCGTTATTGTAATGCAAGTGTGACCAATTCAGTGAAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSGGII.1 CAT X98001 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGGCACGAGGCGGTTAGACATGGGCACTCCACAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCCTATGGCTCAAAGAAAGATGATTATGAATACTGTATGTCTGAGTATTTGAGAATGAGTGGCATC ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 202 HSGGL2.1 CAT V00513 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACTCGCTTCTGGAACGTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAAGGTGAATGTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTGTCTACCCATGGACCCAGAGGTTCTTTGACAGCTTTGGCAACCTGTCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSGHR.1 CAT X06562 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGCGCTCTCTGATCAGAGGCGAAGCTCGGAGGTCCTACAGGTATGGATCTCTGGCAGCTGCTGTTGACCTTGGCACTGGCAGGATCAAGTGATGCTTTTTCTGGAAGTGAGGCCACAGCAGCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAATCCAGGCCTAAAGACAAATTCTTCTAAGGAG ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 264 HSGKP1.1 CAT X78713 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTTCAGCGGACTCGCGCGGCCTCGCTCTTTGGACTCATCACTCGCCCCTCCCCCTCCCGCCGCCGTCACCCAGGAAACCGGCCGCAAATGCGGGCGGACCTGAAGCTGGTTTCATGGCAGCCTCAAAGAAGGCAGTTTTGGGGCCATTGGCGGGGGCAGTGGACCAGGGCACCAGTTCCACGCGCTTTTTGGTTTTCAATTCAAGAACAGCTGAACTACTTAGTCATCATCAAGTGGAAATAAAACAAGAGTTCCCAAGAGAA ..................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSGLI.1 CAT X07384 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGACTCCAGCCCTGGACCGCGCATCCCGAGCCCAGCGCCCAGACAGAGTGTCCCCACACCCTCCTCTGAGACGCCATGTTCAACTCGATGACCCCACCACCAATCAGTAGCTATGGCGAGCCCTGCTGTCTCCGGCCCCTCCCCAGTCAGGGGGCCCCCAGTGTGGGGACAGAAGGACTGTCTGGCCCGCCCTTCTGCCACCAAGCTAACCTCATGTCCGGCCCC ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 206 HSGLYCA.1 CAT X08054 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGTTGTCTTTGGTAGTTTTTTTGCACTAACTTCAGGAACCAGCTCATGATCTCAGGATGTATGGAAAAATAATCTTTGTATTACTATTGTCAGAAATTGTGAGCATATCAGCATTAAGTACCACTGAGGTGGCAATGCACACTTCAACTTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATGATACGCACAAACGG ........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233 HSGLYGEN.1 CAT X79537 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGGCCGCGCTCCCTCCCGGTGCCGGCTTCTCTGAGTCACCAACCTGAGGCTGCCCCGGCCGCCTGCGCACCCGGCAGCACCATGACAGATCAGGCCTTTGTGACACTAACCACAAACGATGCCTACGCCAAAGGTGCCCTGGTCCTGGGATCATCTCTGAAACAGCACAGGACCACCAGGAGGCTGGTCGTGCTCGCCACCCCTCAGGTCTCAGACTCCATGAGAAAAGTT ...................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGLYRA2.1 CAT X52009 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGGGCTCTCCCTCCGCGCCCCTGTTCCCCGCCTCCCTTTAACATCTGGATTATTTTTTGCAATAGCGCTTTCTGGTTTTGTAAGTGCCAATTTGAAACATTTTTTGCCCCCATAACTCGTGGACTACAAAGCACAAAGGACCTGAAAAATGTACAGCTTCAATACTCTTCGACTCTACCTTTCGGGAGCCATTGTATTCTTCAGCCTTGCTGCTTCTAAGGAGGCTGAAGCTGCTCGCTCCGCAACCAAGCCTATGTCACCCTCGGATTTCCTGGATAAGCTAATGGGGAGAACCTCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSGOLGIN.1 CAT X82834 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTTGCCCACAGCCTCAAGGAGGAGACGGCGAGGCCCGGCCCCCGCTGTCCCTGGTGTAAAGAAGTCGCCGTAGCCGTCGCGGCCGGGACTCCCCGGGCTCTCGCCCTTCAGGTTTCGTTGACACTCAGGACCGTACGTACGCTGCGCCATGTTCAAGAAACTGAAGCAAAAGATCAGCGAGGAGCAGCAGCAGCTCCAGCAGGCGCTGGCTCCTGCTCAGGCGTCCTCCAATTCTTCAACACCAACAAGAATGAGGAGCAGGACATCTTCATTTACAGAGCAACTTGATGAAGGTACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 200 HSGONA.1 CAT V00518 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGTAACCGCCCTGAACACATCCTGCAAAAAGCCCAGAGAAAGGAGCGCCATGGATTACTACAGAAAATATGCAGCTATCTTTCTGGTCACATTGTCGGTGTTTCTGCATGTTCTCCATTCCGCTCCTGATGTGCAGGATTGCCCAGAATGCACGCTACAGGAAAACCCATTCTTCTCCCAGCCGGGTGCCCCAATACTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 HSGP39MR.1 CAT Z15017 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCATTTCAACTTTAACACAGCATGATCGAAACATACAACCAAACTTCTCCCCGATCTGCGGCCACTGGACTGCCCATCAGCATGAAAATTTTTATGTATTTACTTACTGTTTTTCTTATCACCCAGATGATTGGGTCAGCACTTTTTGCTGTGTATCTTCATAGAAGGTTG .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239 HSGPCRE.1 CAT X96597 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCTACTTTTTTTGCTCCAGCTCAGGGATGGGGGTGGGCAGGGAAATCCTGCCACCCTCACTTCTCCCCTTCCCATCTCCAGGGGGGCCATGGCCAGTACAGAGTCCTCCCTGTTGAGATCCCTAGGCCTCAGCCCAGGTCCTGGCAGCAGTGAGGTGGAGCTGGACTGTTGGTTTGATGAGGATTTCAAGTTCATCCTGCTGCCTGTGAGCTATGCAGTTGTCTTTGTGCTGGGCTTG .........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 HSGROW1.1 CAT V00519 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTACAGGCTCCCGGACGTCCCTGCTCCTGGCTTTTGGCCTGCTCTGCCTGCCCTGGCTTCAAGAGGGCAGTGCCTTCCCAACCATTCCCTTATCCAGGCCTTTTGACAACGCTATGCTCCGCGCCCATCGTCTGCACCAGCTGGCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSGST4.1 CAT X08020 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGAATCCGCACCAACCAGCACCATGCCCATGATACTGGGGTACTGGGACATCCGCGGGCTGGCCCACGCCATCCGCCTGCTCCTGGAATACACAGACTCAAGCTATGAGGAAAAGAAGTACACGATGGGGGACGCTCCTGATTATGACAGAAGCCAGTGGCTGAATGAAAAA ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSH12.1 CAT X57129 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGCAGCGCAGCGGCTCAGAGCCTGCCAGCCAGGCGGGCGACCAGAGCACCAATCAGAGCGCGCCTGCGCTCTATATATACAGCGGCCCTGCCCAGGCGCTGCTTCATCGGCGCTTTGCCACTTGTACCCGAGTTTTTGATTCTCAACATGTCCGAGACTGCTCCTGCCGCTCCCGCTGCCGCGCCTCCTGCGGAGAAGGCCCCTGTAAAGAAGAAGGCGGCCAAAAAGGCTGGGGGTACGCCTCGTAAGGCGTCCGGTCCCCCGGTGTCAGAGCTCATCACCAAGGCTGTGGCCGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSH31.1 CAT X57128 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATGAACCAATCAGTCTGGTCACTCTTCAGCCAATGATTTTATCGCGCGGGACTTTTGAAATATTACAGGACCAATCAGAATGTTTCTCACTATATTTAAAGGCCACTTGCTCTCAGTTCACTACACTTTGTGTGTGCTCTCATTGCAAATGGCTCGTACGAAGCAAACAGCTCGCAAGTCTACCGGCGGCAAAGCTCCGCGCAAGCAGCTTGCTACTAAAGCAGCCCGTAAGAGCGCTCCGGCCACCGGTGGCGTGAAGAAACCTCATCGCTACCGCCCGGGCACCGTGGCCTTGCGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSHAGH1.1 CAT X90999 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GATTTGCGGAAGAACCTGACCGTGGACGAGGGCACCATGAAGGTAGAGGTGCTGCCTGCCCTGACCGACAACTACATGTACCTGGTCATTGATGATGAGACCAAGGAGGCTGCCATTGTGGATCCGGTGCAGCCCCAGAAGGTCGTGGACGCGGCGAGAAAGCACGGGGTGAAACTGACCACAGTG ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 HSHB15RNA.1 CAT Z11697 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGCCATGTCGCGCGGCCTCCAGCTTCTGCTCCTGAGCTGCGCCTACAGCCTGGCTCCCGCGACGCCGGAGGTGAAGGTGGCTTGCTCCGAAGATGTGGACTTGCCCTGCACCGCCCCCTGGGATCCGCAGGTTCCCTACACGGTCTCCTGGGTC ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHBGF8.1 CAT X52946 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGTGAGTCATCCGTCCAGAAGGCGGGGAGAGCAGCAGCGGCCCAAGCAGGAGCTGCAGCGAGCCGGGTACCTGGACTCAGCGGTAGCAACCTCGCCCCTTGCAACAAAGGCAGACTGAGCGCCAGAGAGGACGTTTCCAACTCAAAAATGCAGGCTCAACAGTACCAGCAGCAGCGTCGAAAATTTGCAGCTGCCTTCTTGGCATTCATTTTCATACTGGCAGCTGTGGATACTGCTGAAGCAGGGAAGAAAGAGAAACCAGAAAAAAAAGTGAAGAAGTCTGACTGTGGAGAATGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHBZ17.1 CAT X77366 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACGGGGTTTGACACTGAGGAGGGTAACCTGCTGGCTGGAGCGGCAGAGCAGTGGCCTTGATTTGTCTTTTGGAAGATTTTAAAAACCAAAAAGCATAAACATTCTGGTCCTTCAGCAATGCTTTCTCTGAAGAAATACTTAACGGAAGGACTTCTCCAGTTCACCATTCTGCTGAGTTTGATTGGGGTACGGGTGGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTGGGGCCCAGTTCTGCCTAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253 HSHCF1.1 CAT X79198 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACCAACCAGTGGTTCATCCCAGCCGTGAGGGGGGACATTCCCCCTGGGTGTGCAGCCTATGGCTTCGTGTGTGACGGGACTCGCCTCCTGGTGTTTGGTGGGATGGTGGAGTATGGGAAATACAGCAATGACCTCTACGAACTCCAGGCGAGCCGGTGGGAGTGGAAGAGACTCAAAGCAAAGACGCCCAAAAACGGGCCCCCTCCGTGTCCTCGACTCGGGCACAGCTTCTCCCTTGTGGGCAACAAATGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 187 HSHCGIXGN.1 CAT X92109 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAGGAAAGAACCCTGGGAACGGGAGGCGAAGGGATAATGAGCTGGGGATGGGAGCAGTCGCAGGAAGAATCCTCTGCCTGGAGCCGGCAGACTCCAACCCCTCAGCTTGAGACTCAGGAGCCCCATAGTCCCCACAGCAATAAGAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCCCCAACTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229 HSHE3A.1 CAT X76383 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACATGCTGATCCCCACTACAATCAGTGACCTGAACTCAGAGTCCAAGTAGGACACGCAGGTGGACGTGGTGACTGAGATGACATCCTCTCTAAAGATTTGGGGCATACTCTTGGCCCTGCTTTGCATCCTTTGCAGGCTGTGTGTATACAGTAACAACATTTACTGGAGAGAATTCATAAAACTTCATTACTTAAGTCCAAGTCGAGAATTTAAAGAGTACAAATGT ...............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248 HSHEPLF.1 CAT X68985 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCTAGGACGGAGGAAAAGCTCAGCAACATTTTAGGGGGCGGTTGTTTCTTTCTTTCTTATTTCTTTTTTTAAGGGGAAAAAATTTGAGTGCATCGCGATGGAGAAAATGTCCCGACCGCTCCCCCTGAATCCCACCTTTATCCCGCCTCCCTACGGCGTGCTCAGGTCCCTGCTGGAGAACCCGCTGAAGCTCCCCCTTCACCACGAAGACGCATTTAGTAAAGATAAAGACAAGGAAAAGAAGCTG ..................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 206 HSHGMCSF.1 CAT X17648 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACCCTGTACGTGCTTCCTTCGGCCTGTCGCTCTTCCCTTCTCTCTGACCAGCACCATGCTTCTCCTGGTGACAAGCCTTCTGCTCTGTGAGTTACCACACCCAGCATTCCTCCTGATCCCAGAGAAATCGGATCTGCGAACAGTGGCACCAGCCTCTAGTCTCAATGTGAGGTTTGACTCCAGGACGATGAATTTAAGCTGGGAC ........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHGMP07J.1 CAT X64995 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTAAAAATATTTTAAGTAAAGATAAGTAAACCCAGGGATTAACTTAATCCACTAGGAAATACATCACCAGATTTGTAACTGAGAACTATTGAACTTCAATCAATTTCAGAAATGTGCTTCTACTGCTTTACTGAGACTATGTGACTTTTATGCTTTTATGTTTCAGATTTGGGAACCAATCCATGAAAAGAGAGAACTTTACTCTCATCACTGACTTTGTTTTCCAAGGTTTCTCTAGCTTCCATGAGCAGCAGATCACCCTTTTTGGCGTGTTCCTTGCACTATACATCTTAACCTTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 277 HSHIN1.1 CAT X68242 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTTTACACTAAGAACTCTTTGTTACATCAGGTATTGCACTCTCAGTCTCGCCATGTTGAAGTCAGAATGGCCTGTATTCACTATCTTCGAGAGAACAGAGAGAAATTTGAAGCGTTTATAGAAGGATCATTTGAAGAATATTTAAAGCGTTTGGAAAATCCACAGGAATGGGTAGGACAAGTGGAAATAAGTGCCCTTTCTCTTATGTACAGGAAA ...............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSHINGE.1 CAT Y00764 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGGGGCTCGTGTTGAATCTAGAACCGTAGCCAGACATGGGACTGGAGGACGAGCAAAAGATGCTTACCGAATCCGGAGATCCTGAGGAGGAGGAAGAGGAAGAGGAGGAATTAGTGGATCCCCTAACAACAGTGAGAGAGCAATGCGAGCAGTTGGAGAAATGTGTAAAGGCCCGGGAGCGGCTA ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 258 HSHIRA.1 CAT X77633 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCAACCACAATGGCAAGCCGATTTTTTCAGTTGATATTCACCCTGACGGGACCAAGTTCGCAACTGGAGGACAAGGGCAGGATTCTGGGAAGGTTGTGATCTGGAATATGTCTCCAGTCCTCCAGGAGGATGACGAGAAGGATGAAAATATTCCCAAGATGCTTTGCCAGATGGACAATCACTTAGCATGTGTGAACTGTGTGCGGTGGTCAAACAGTGGGATGTATTTAGCTTCTGGGGGAGATGACAAACTGATT ............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHISH2B.1 CAT X00088 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCTGACGTTACCCTGAATAACTACCAATCAGACACAAGACTTCAACTCTTCACCTTATTTGCATAAGCGATTCTATATAAAAGCGCCTTGTCATACCCTGCTCACGCTGTTTTTCCTTTTCGTTGGCGCTTTATAGCTACACAGTGCTATGCCAGAGCCAGCGAAGTCTGCTCCCGCCCCGAAAAAGGGCTCCAAGAAGGCGGTGACTAAGGCGCAGAAGAAAGACGGCAAGAGCGCAGCGCACCGCAAGGAGAGCTATTCCATCTATGTGTACAAGGTTCTGAAGCAGGTCCACCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 HSHK33.1 CAT X75535 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGTAGCAAGATGGCCGCCGCTGAGGAAGGCTGTAGTGTCGGGGCCGAAGCGGACAGGGAATTGGAGGAGCTTCTGGAAAGTGCTCTTGATGATTTCGATAAAGCCAAACCCTCCCCAGCACCCCCTTCTACCACCACGGCCCCTGATGCTTCGGGGCCC ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSHKA2.1 CAT X81419 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCTGTGCCTGGGCTATGTCTGCCAGCCCATGGCATGCCTGCCTTCGGTCTGCCTGCCCACCACCTTCCGGCCAGCCAGCTGCCTCTCCAAAACCTATCTATCCAGTTCCTGCCAGGCAGCCAGTGGCATCTCCGGCTCCATGGGCCCCGGCAGCTGGTACAGCGAAGGGGCCTTCAAT .............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHLACW6A.1 CAT Z22752 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGTCCTTCTTCCTGAATACTCATGACGCGTCCCCAATTCCCACTCCCATTGGGTGTCGGGTTCTAGAGAAGCCAATCAGCGTCTCCGCAGTCCCGGTTCTAAAGTCCCCAGTCACCCACCCGGACTCGGATTCTCCCCAGACGCCGAGATGCGGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGGGAGCCCTGGCCCTGACCGAGACCTGGGCCTGCTCCCACTCCATGAGGTATTTCGACACCGCCGTGTCCCGGCCCGGCCGCGGAGAGCCCCGCTTCATCTCAGTGGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 201 HSHMGCOAS.1 CAT X83618 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGTTTCTGCTGGGTTTCTGAACTGCTGGGTTTCTGCTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACCTGCTCGCCTGCTCCCAGTAGCCCACCAAAGGTTTTCTACAGCCTCTGCTGTCCCCCTGGCCAAAACAGATACTTGG ...................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHMGICP.1 CAT X92518 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAAGCAACAGCAGCCCTCGCAGCCCGCCAGCTCGCGCTCGCCCCGCCGGCGTCCCCAGCCCTATCACCTCATCTCCCGAAAGGTGCTGGGCAGCTCCGGGGCGGTCGAGGCGAACGGCTGCAGCGGCGGTACGGGCGGCGGGAGGCAGGATGAGCGCACGCGGTGAGGGCGCGGGGCAGCCGTCCACTTCAGCCCAGGGACAACCTGCCGCCCCAGCGCCTCAGAAGAGAGGACGCGGCCGCCCCAGGAAGCAGCAGCAAGAACCAACCGGTGAGCCCTCTCCTAAGAGACCCAGGGGA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSHMPFK.1 CAT Y00698 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCTGACTGAGAGTGGATCATGACCCATGAAGAGCACCATGCAGCCAAAACCCTGGGGATTGGCAAAGCCATTGCTGTCTTAACCTCTGGTGGAGATGCCCAAGGTATGAATGCTGCTGTCAGGGCTGTGGTTCGAGTTGGTATCTTCACCGGTGCCCGTGTCTTCTTT ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSHNF4.1 CAT X76930 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCAAAACCCTCGTCGACATGGACATGGCCGACTACAGTGCTGCACTGGACCCAGCCTACACCACCCTGGAATTTGAGAATGTGCAGGTGTTGACGATGGGCAATGACACGTCCCCATCAGAAGGCACCAACCTCAACGCGCCCAACAGCCTGGGTGTCAGCGCCCTG ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHNF4G.1 CAT Z49826 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGACAGCCCTTTGAGAGGGTTCAGCCTCAAGGGAGTCCTCCAGGGGGACTCAGAGGGTCCGAAATGTGTCATTGGCCAAGGTGGGTGGCAATGCTGTGACATTGACCGAGTACATATCAGCCCAGTCCGGGAAGGTGCCCAGCTGGAAGATGGTCTGTGCCCAGGTATTCATAGCCAAACTGAGCAGCAGGACACCCATCAGGTTCATCAGGAGGCCTGTCCGCACCATGTCTTTGACCAGCAAGTGTCCAGAGGCGAAGGCGATGGAGTTGGGGGGCGTTGAGACCGGGAGCATGAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 191 HSHNRNPU.1 CAT X65488 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAGTTTGAGGCAGCGCTAGCGGTGAATCGGGGCCCTCACCATGAGTTCCTCGCCTGTTAATGTAAAAAAGCTGAAGGTGTCGGAGCTGAAAGAGGAGCTCAAGAAGCGACGCCTTTCTGACAAGGGTCTCAAGGCCGAGCTCATGGAGCGACTCCAGGCTGCGCTGGACGACGAGGAGGCCGGGGGCCGC .........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHOK2H1.1 CAT X82125 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTCCCAGGAAGCTGTGCGGAGCTGTGATGCTGGGCAACTACAGAAACTTGGTCTTGGAGACTTGAATGAAAATTCTGTGGAGAATCTTCAGCAGAAAACACTTCAGGATCTGTTACATGAGCTTTCCTCCTGGCTAGTTTTGGAAGGCATGGCCAGTACAATTACTGGAAGTCAGGATTGTATTGTGAATCATCGAGGGGAAGTGGATGGGGAGCCTGAACTAGATATTTCCCCTTGTCAACAGTGGGGAGAAGCATCTTCTCCTATTTCCAGAAACAGGGACAGTGTGATGACTCTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSHOX2H.1 CAT X16665 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGGGGGGGGGTCCCTTCCGATCCTCCCTCCTGACGCCCCCCCCAGCAGCCCCCTCCCCCACCATTGAAAGCCATGAATTTTGAATTTGAGAGGGAGATTGGGTTTATAAACAGCCAGCCGTCGCTCGCCGAGTGTCTGACTTCCTTCCCCGCTGTCTTGGAGACATTTCAAACTTCATCAATCAAGGAGTCGACATTAATTCCTCCTCCTCCTCCTTTCGAG ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHOX329.1 CAT X07495 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGAGGGAGAGTGACAGCAGCGCTCGCGGGGGCTCAACCCCCAGACCTCCAGAAATGACGTCAGAATCATTTGCATCCCGCTGCCTCTACCTGCCTGGTCCAGCTGGGACCCTGCCTCGCCGGCCGCATGGCCAGAGGGTTGGAAATTAATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAAGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATTACGGCCGGACCAGGGAATCGGGATTCCAGCATCACCACCAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSHOX4D.1 CAT X59373 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACAATCTCTCTTCTTCAAATTCTTTCCCCAAAATGTCCTTTCCCAACAGCTCTCCTGCTGCTAATACTTTTTTAGTAGATTCCTTGATCAGTGCCTGCAGGAGTGACAGTTTTTATTCCAGCAGCGCCAGCATGTACATGCCACCACCTAGCGCAGACATGGGGACCTATGGAATGCAAACC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 164 HSHPA1S.1 CAT X00637 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAGCTTTTTGCAGTGGACTCAGGCAATGACGTCACGGATATCGCAGATGACGGCTGCCCGAAGCCCCCCGAGATTGCACATGGCTATGTGGAGCACTCGGTTCGCTAC ..............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSHPBRII4.1 CAT X67337 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTCCGGGCGGCGGCGGCCGAGGCTGAAGGAAGATGGCGGACGGCGTGGACCACATAAACATTTACGCGGATGTCGGCGAAGAGTTCAACCAGGAAGCTGAATATGGTGGGCATGATCAGATAGATTTGTATGACGATGTCATATCTCCATCTGCAAATAATGGAGATGCCCCAGAAGACCGA ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSHPCP.1 CAT X17042 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGCTAGACTAAGTTGGTCATGATGCAGAAGCTACTCAAATGCAGTCGGCTTGTCCTGGCTCTTGCCCTCATCCTGGTTCTGGAATCCTCAGTTCAAGGTTATCCTACGCAGAGAGCCAGGTACCAATGGGTGCGCTGCAATCCAGACAGTAATTCTGCAAACTGCCTT ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHPS12.1 CAT X12433 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGACTGGGGGCGAGCTGAGCACCTGTAGTCAATCACACGCAGCTTTTAGGTTTGTTTGAATAAGAGATCTGACCTGACCGGCCCAACTGTACAACTCTTCAAGGAAAATTCGTATTTGCAGTGGGAAGAATAAGTAACATTGATCAAGATGAATGCCATGCTGGAGACTCCCGAACTCCCAGCCGTGTTTGATGGAGTGAAGCTGGCTGCAGTGGCTGCTGTGCTGTACGTGATCGTCCGGTGTTTGAACCTGAAGAGCCCCACAGCCCCACCTGACCTCTACTTCCAGGACTCGGGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 175 HSHSJ1MR.1 CAT X63368 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCGCCTGACGACTGACCAGTTGCCATGGCATCCTACTACGAGATCCTAGACGTGCCGCGAAGTGCGTCCGCTGATGACATCAAGAAGGCGTATCGGCGCAAGGCTCTCCAGTGGCACCCAGACAAAAACCCAGATAATAAAGAGTTTGCTGAGAAGAAATTTAAGGAGGTGGCC .........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223 HSHT.1 CAT X07523 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTCTTGGAAGAGGAGAACTGGACGTTGTGAACAGAGTTAGCTGGTAAATGTCCTCTTAAAAGATCCAAAAAATGAGACTTCTAGCAAAGATTATTTGCCTTATGTTATGGGCTATTTGTGTAGCAGAAGATTGCAATGAACTTCCTCCAAGAAGAAATACAGAAATTCTGACAGGTTCCTGGTCTGACCAAACATATCCAGAAGGCACCCAGGCTATCTAT .........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSHTH1R.1 CAT X05290 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGACCTCCACACTGAGCCATGCCCACCCCCGACGCCACCACGCCACAGGCCAAGGGCTTCCGCAGGGCCGTGTCTGAGCTGGACGCCAAGCAGGCAGAGGCCATCATGTCCCCGCGGTTCATTGGGCGCAGGCAGAGCCTCATCGAGGACGCCCGCAAGGAGCGGGAG ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHUMM9.1 CAT X74837 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACACCTCACATCCCTTTGTTCAACCTCTCTTCCCTCAACGGAGAGCTGCATTCCTGGGAATTTCTGTTGTGCACTTTTCCCACTTGCCCTGCTGTCATTTAAAGGTGAACATTCTAGTTTTGCTAAGAAAACCCTTTCCTTCATTTGGAATGAACAGCAATTTTATTACTTTTGACCTTAAAATGAGTTTGCTGCCTTCAAATCTTTTCAGCGCCTTCATCACGCTCTGCTTCGGGGCGATCTTCTTCCTGCCAGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAGCCCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSHUMS3.1 CAT X55715 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGTTGCTGTCGGCGGCGGCAAGATGGCAGTGCAAATATCCAAGAAGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATGAGTTTCTTACTCGGGAGCTGGCTGAAGATGGCTACTCTGGAGTTGAGGTGCGAGTTACACCAACCAGGACAGAAATCATTATC ......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHYLTK.1 CAT X77278 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACAGGAAGAACCAGGCTCGGTCCAGTGGCACCCAGCTCCCTACCTCCTGTGCCAGCCGACTGGCCTGTGGCAGGCCATTCCCAGCGTCCCCGACTGTGACCACTTGCTCAGTGTGCCTCTCACCTGCCTCAGTTTCCCTCTGGGGGCGATGGCGGGGCGAGGCTCTCTGGTTTCCTGGCGGGCATTTCACGGCTGTGATTCTGCTGAGGAACTTCCCCGGGTGAGCCCCCGCTTCCTCCGAGCCTGGCACCCCCCTCCCGTCTCAGCCAGGATGCCAACGAGGCGCTGGGCCCCGGGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSHZF10.1 CAT X78933 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAACGGAGCTGACCCTATCCGAACAGGCCCCTGCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAGACTATGAATCAAAGTTGAGACCAAGAAATTATTTCTGAAAAAGGATATGGAAAACCTTACAAAACACAGCATTGAGTGTTCAAGTTTCAGAGGTGATTGGGAATGTAAAAACCAGTTTGAGAGAAAACAGGGATCTCAGGAAGGACATTTCAGTGAAATGATATTTACTCCTGAAGACATGCCCACTTTCAGTATC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSI12SRN.1 CAT X13956 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGTTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCCTGGCCGACAGAGCAAGACTCTTGTCTCAAAAAAATATAGAATTAAACTAAATTAAAAAATAAATGGAACCACCCAGCCCATCCCCTACCCACCTGTCCTGCATTTTTTTTCTCCTTATCACTGTCTCACCACTAGAGGCCAGCTCCACCAGGGCAAGGGTTTTTCCCTGCCTGCCACTGTATGCCGAGTGTCCAGAACAAAGCCTAGCACAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 278 HSI15PGN1.1 CAT X90908 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAAGAAGTGGGGTGACTTAGGGGCTGAGCCTCAGCAACTGGGAGAGTTTATAAGCTGGGATAGCAGACCCCTCAGCACCACCCATTCTCCTCATCCCTCTGCTCTCTGGCCTCCAGCCTCCCAGCAGCATGGCTTTCACCGGCAAGTTCGAGATGGAGAGTGAGAAGAATTATGATGAGTTCATGAAGCTCCTTGGGATCTCCAGCGATGTAATCGAAAAGGCCCGCAACTTCAAGATCGTCACGGAGGTGCAGCAGGATGGGCAGGACTTCACTTGG ................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248 HSIAPPC1.1 CAT X14904 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGATACAAGCTTGGACTCTTTTCTTGAAGCTTTCTTTCTATCAGAAGCATTTGCTGATATTGCTGACATTGAAACATTAAAAGAAAATTTGAGAAGCAATGGGCATCCTGAAGCTGCAAGTATTTCTCATTGTGCTCTCTGTTGCATTGAACCATCTGAAAGCTACACCCATTGAAAGTCATCAGGTGGAAAAGCGGAAATGCAACACTGCCACATGTGCAACGCAGCGCCTGGCAAATTTTTTAGTT ..................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 HSIATIH3.1 CAT X67055 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TATTCAGCGATGGACTTTGCATGGTGGCCCTGTCTCATCTTGGCTCTGCTCTCCAGCTTGGCAGCCTCTGCTTCCCGAGAAGCCCCTTTCGGCTGCTTGGGAAACGGAGCCTCCCGGAAGGGGTGGCCAATGGCATCGAGGTCTACAGTACCAAAATCAACTCCAAGGTG ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 HSICAM2.1 CAT X15606 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAAAGATCTCCCTCCAGGCAGCCCTTGGCTGGTCCCTGCGAGCCCGTGGAGACTGCCAGAGATGTCCTCTTTCGGTTACAGGACCCTGACTGTGGCCCTCTTCACCCTGATCTGCTGTCCAGGATCGGATGAGAAGGTATTCGAGGTACACGTGAGGCCAAAGAAGCTGGCGGTTGAGCCCAAAGGGTCCCTCGAGGTCAACTGCAGCACC ..............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238 HSICLNGEN.1 CAT X91788 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGACTGCCTCTTCCAGGGCGGGCGGTGTGGTGCACGCATTGCTGTGCTCCAACTCCCTCAGGGCCTGTGTTGCCGCACTCTGCTGCTATGAGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCAGCGGAGGGGCTCCTGCGGCAGCAGCCAGACACTGAGGCTGTGCTGAACGGGAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAGCCGCCTGTCTTGGTTAGATGGCTCT ........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 HSIFD1.2 CAT V00531 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAAAACCTAGAGGCCACGGTTCAAGTTACCCACCTCAGGTAGCCTAGTGATATTTGCAAAATCCCAATGGCCCGGTCCTTTTCTTTACTGATGGTCGTGCTGGTACTCAGCTACAAATCCATCTGCTCTCTGGGCTGTGATCTGCCTCAGACCCACAGCCTGCGTAATAGGAGGGCCTTGATACTCCTGGCACAAATGGGAAGAATCTCTCCTTTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 HSIFD6.1 CAT V00535 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAAAGGACATTCTAACTGCAACCTTTCGAAGCCTTTGCTCTGGCACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTTCTCCACTACAGCTCTTTCCATGAGCTACAACTTGCTTGGATTCCTACAAAGAAGCAGCAATTTTCAGTGTCAGAAGCTCCTGTGGCAATTGAATGGGAGGCTTGAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 214 HSIFI56R.1 CAT X03557 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGATCTCAGAGGAGCCTGGCTAAGCAAAACCCTGCAGAACGGCTGCCTAATTTACAGCAACCATGAGTACAAATGGTGATGATCATCAGGTCAAGGATAGTCTGGAGCAATTGAGATGTCACTTTACATGGGAGTTATCCATTGATGACGATGAAATGCCTGATTTAGAAAACAGAGTCTTGGATCAGATTGAATTCCTAGACACCAAATAC ................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 HSIFNIN3.1 CAT X02492 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTCCGGGCTGAAGATTGCTTCTCTTCTCTCCTCCAAGGTCTAGTGACGGAGCCCGCGCGCGCGCCACCATGCGGCAGAAGGCGGTATCCGTTTTCTTGTGCTACCTGCTGCTCTTCACTTGCAGTGGGGTGGAGGCAGGTAAGAAAAAGTGCTCGGAGAGCTCGGACAGCGGCTCCGGGTTCTGGAAGGCCCTGACCTTCATGGCCGTCGGAGGAGGA .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 HSIFP53.1 CAT X62570 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCTGAACAAATCCTCTGACCTCAGGCCGGCTGTGAACGTAGTTCCTGAGAGATAGCAAACATGCCCAACAGTGAGCCCGCATCTCTGCTGGAGCTGTTCAACAGCATCGCCACACAAGGGGAGCTCGTAAGGTCCCTCAAAGCGGGAAATGCGTCAAAGGATGAAATTGATTCTGCAGTAAAGATGTTGGTGTCATTAAAAATGAGCTAC ..............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSIGF27.1 CAT X07868 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCACCGCGGCGCCTAGGGCTGCGGCAGGGACTCGGCCTCTGGGAGGTTTACCTCGCCCCCACTTGTGCCCCCAGCTCAGCCCCCCTGCACGCAGCCCGACTAGCAGTCTAGAGGCCTGAGGCTTCTGGGTCCTGGTGACGGGGCTGGCATGACCCCGGGGGTCGTCCATGCCAGTCCGCCTCAGTCGCAGAGGGTCCCTCGGCAAGCGCCCTGTGAGTGGGCCATTCGGAACATTGGACAGAAGCCCAAAGAGCCAAATTGTCACAATTGTGGAACCCACATTGGCCTGAGATCCAAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSIGFIRR.1 CAT X04434 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTTTTTTTTTTTTGAGAAAGGGAATTTCATCCCAAATAAAAGGAATGAAGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAATCTGCGGGCCAGGCATCGACATCCGCAACGACTATCAGCAGCTGAAGCGCCTGGAG .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSIGKP3.1 CAT Z00042 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAGGAGGCAGTGGTCTCTGCAGCTAGAAGCACAGCAAGTCCAATGCTTCTTTGCATGTTCCTCCCAGCCATGCTGCTGTTCAGAGCCCATATCAATACCTGGGTCAGAACTCAGGGCAAGCACTGCTCAGTTAGGACAAGAGAGACTCATGGAAGCCCCATCTCAGCTTCTCTGCCTCCTGTACTCTAGCTCCCAGGTCCCTCCAGAGAAGTTATGCTTGATGCAGTCTCTTGACTCCTTGTCTTTGTCTTCAGGGAAAAGAGACTCTCTCATCTGTGTGTGCAGTCAGAGCATTGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSIGVK01.1 CAT X07963 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAGTTACTAAAATAAGCCTATTCTGCAGCTGTGCCCAGCACTGTTCAGATGAAGCTGATTTGCATGTGCTGAGATCATATTCTACTGCCCCAGAGATTTAATAATCTGATCATACACACTTCATTCTTCCTCAGGAGACGTTGTAGAAATGAGACCGTCTATTCAGTTCCTGGGCTCTTGTTGTTCTGGCTTCATGGTAGACATCCAGATGACACAGTCTCCATCCTCACTGTCTGCATCTCTGGGAGGCAAAGTCACCATCACTTGCAAGGCAGTCCAAGACATTTTGAAGAAATAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 HSIGVL005.1 CAT X57805 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGGGTGTCTCCACTATGGCCTGGACCCCTCTCTGGCTCACTCTCCTCACTCTTTGCATAGGTTCTGTGGTTTCTTCTGAGCTGACTCAGGACCCTACTGTGTCTGTGGCCTTGGGACAGACGCTCAGGATCAAATGCCAAGGAGACACCATCAGAAGTTATTAT MMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSIGVW10.1 CAT X51886 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCTCCACCACTGACCCTTTCCACACTGCTGCACCCACCAGGTGATTTGCATATTGCACCCTAGGGGAGGACCTTCCCTTGTGAGTCTGAGGTAAAAGCTCAGCTCTAACCTTGCCTCGACAGATCAGGACTCCTCAGTCCATCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCGGCTAATGCTCAAGATAGAAAAAATATGAGGATCCAGTGGTGATACTGTGATGGCCCAGACTCCACTCTCCTGGCCTGTCGCCTCTAGAGAGCCACCCCCATATCCTGTAGGTCTAGTCAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218 HSIKBL.1 CAT X77909 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAGCTTCTTAAACACAGGCCTTGGGCTACGGCTCTGGGGGTACTTGGGGGGGCGGGGGCAGGTCTGATGAGTAACCCCTCCCCCCAGGTTCCAGAGGAAGAAGCCTCCACATCTGTCTGCCGGCCCAAGAGTTCCATGGCCTCCACTTCCCGCCGCCAACGCCGAGAACGTCGCTTTCGTCGTTACTTGTCTGCAGGACGGCTGGTCCGGGCCCAG ....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 208 HSIL1R.1 CAT X02851 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCTGCCAGCCAGAGAGGGAGTCATTTCATTGGCGTTTGAGTCAGCAAAGAAGTCAAGATGGCCAAAGTTCCAGACATGTTTGAAGACCTGAAGAACTGTTACAGTGAAAATGAAGAAGACAGTTCCTCCATTGATCATCTGTCTCTGAATCAGAAATCCTTCTATCATGTAAGCTATGGCCCACTCCATGAAGGCTGCATGGATCAA ..........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSIL1R2II.1 CAT X59770 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACGTGCTGCTGGGTCTCAGTCCTCCACTTCCCGTGTCCTCTGGAAGTTGTCAGGAGCAATGTTGCGCTTGTACGTGTTGGTAATGGGAGTTTCTGCCTTCACCCTTCAGCCTGCGGCACACACAGGGGCTGCCAGAAGCTGCCGGTTTCGTGGGAGGCATTACAAGCGGGAGTTCAGGCTGGAAGGGGAGCCTGTAGCCCTGAGGTGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSILF.1 CAT X60787 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGAGGTTCGGTCAGCAGCAGCTCCGCTTTGGCTCTGATCATACAGTTTTTAGTAATCTTTCCTGAAAAACACTGGCTTTCTCTGGAAAAGCTTCCTCAGCTGGAAGCTTTACTCCCTCCTCGACAGAAAGTGAGGATTACAGATGACATGGCTCAGGTATTCGTGGACGGCGTGTTCCAGAGGCGCGGGGCGCCGCCGCTGCAGCTGCCGCGCGTGTGCACATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCACTGCCCTGTCCAGCGAGAAGAGAGAGAAGCAGGAGGCG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 289 HSINASPA.1 CAT Z25521 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGTGCGCGCGGCCGTGCAGCCTGGGCAGTGGGTCCTGCCTGTGACGCGCGGCGGCGGTCGGTCCTGCCTGTAACGGCGGCGGCGGCTGCTGCTCCAGACACCTGCGGCGGCGGCGGCGACCCCGCGGCGGGCGCGGAGATGTGGCCCCTGGTAGCGGCGCTGTTGCTGGGCTCGGCGTGCTGCGGATCAGCTCAGCTACTATTTAATAAAACAAAATCTGTAGAATTCACGTTTTGTAATGACACTGTCGTCATTCCATGCTTTGTTACTAATATGGAGGCACAAAAC ...........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 276 HSINB4.1 CAT X51841 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCCGCGCGCTGCAGCCCCATCTCCTAGCGGCAGCCCAGGCGCGGAGGGAGCGAGTCCGCCCCGAGGTAGGTCCAGGACGGGCGCACAGCAGCAGCCGAGGCTGGCCGGGAGAGGGAGGAAGAGGATGGCAGGGCCACGCCCCAGCCCATGGGCCAGGCTGCTCCTGGCAGCCTTGATCAGCGTCAGCCTCTCTGGGACCTTGGCAAACCGCTGCAAGAAGGCCCCAGTGAAGAGCTGCACGGAGTGTGTCCGTGTGGATAAGGACTGCGCCTAC ..............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSINOSA.1 CAT X73029 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAAGTTCTCAAGGCACAGGTCTCTTCCTGGTTTGACTGTCCTTACCCCGGGGAGGCAGTGCAGCCAGCTGCAAGCCCCACAGTGAAGAACATCTGAGCTCAAATCCAGATAAGTGACATAAGTGACCTGCTTTGTAAAGCCATAGAGATGGCCTGTCCTTGGAAATTTCTGTTCAAGACCAAATTCCACCAGTATGCAATGAATGGGGAAAAAGACATCAACAACAATGTGGAGAAAGCCCCCTGTGCCACCTCCAGTCCAGTGACACAGGATGACCTTCAGTATCACAACCTCAGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251 HSINPO5P.1 CAT Z31695 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCGGCCAACGTGGGCTCGCTCTTCGACGACCCAGAAAACCTGCAGAAGAACTGGCTTCGGGAATTTTACCAGGTCGTGCACACACACAAGCCGCACTTCATGGCCTTGCACTGTCAGGAGTTTGGAGGGAAGAACTACGAGGCCTCCATGTCCCACGTGGACAAGTTCGTCAAAGAACTATTGTCGAGTGATGCGATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAAACTACAAATCCCAG .....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 296 HSINTA6R.1 CAT X53586 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGCGACCGTCCCGGGGGTGGGGCCGGGCGCAGCGGCGAGAGGAGGCGAAGGTGGCTGCGGTAGCAGCAGCGCGGCAGCCTCGGACCCAGCCCGGAGCGCAGGGCGGCCGCTGCAGGTCCCCGCTCCCCTCCCCGTGCGTCCGCCCATGGCCGCCGCCGGGCAGCTGTGCTTGCTCTACCTGTCGGCGGGGCTCCTGTCCCGGCTCGGCGCAGCCTTCAACTTGGACACTCGGGAGGACAACGTGATCCGGAAATATGGAGACCCCGGGAGCCTCTTCGGCTTCTCGCTGGCCATG ..................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSINTFA4B.1 CAT X55733 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTAGAGCCCTCTCCCAACATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACAGACTTTCTGGCTGAGGATGGGGGTACTGGTGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACGGATGACCTGGAAGGAGAT ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 271 HSIRBPG.1 CAT X53044 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GACCTTCTGTCCACCAGCTGAGAAGGACAAGGGCGGAAGGCAGCTGCACAGAGCAGGGCCACGGCCTTGCACACAGTCCAGGGAGCTTTTGTGCAGGAGCCAGGCCTCCCCCTGGGTCCCCATGATGAGAGAATGGGTTCTGCTCATGTCCGTGCTGCTCTGTGGCCTGGCTGGCCCCACACACCTGTTCCAGCCAAGCCTGGTGCTGGACATGGCCAAGGTCCTCTTGGATAACTACTGCTTCCCGGAGAACCTGCTGGGCATGCAGGAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 257 HSIRF.1 CAT Z11559 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCTCGAACGCGCAGCGCACGGGAACCGGTCCCGCTGCTTGGGTCAGGTTCGCCGGTCGCGGGAGCCCCGCCGTGCAGTCGGAGGAACACGTGGCCATCAGTAATCATGAGCAACCCATTCGCACACCTTGCTGAGCCATTGGATCCTGTACAACCAGGAAAGAAATTCTTCAATTTGAATAAATTGGAGGATTCAAGATATGGGCGCTTACCATTTTCGATCAGAGTTCTTCTGGAAGCAGCCATTCGGAATTGT ...........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSIRF1.1 CAT X14454 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCCGTGCCCGGCGGCCTTAAGAACCAGGCAACCTCTGCCTTCTTCCCTCTTCCACTCGGAGTCGCGCTCCGCGCGCCCTCACTGCAGCCCCTGCGTCGCCGGGACCCTCGCGCGCGACCAGCCGAATCGCTCCTGCAGCAGAGCCAACATGCCCATCACTCGGATGCGCATGAGACCCTGGCTAGAGATGCAGATTAATTCCAACCAAATCCCGGGGCTCATCTGGATTAATAAAGAGGAGATGATCTTCCAGATCCCATGGAAGCATGCTGCCAAGCATGGCTGGGACATCAACAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229 HSISANNEX.1 CAT Z11502 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGTTGCTGTCGGTAAACTTTGCCTGTAGGAGGACTGATCTCTTAATGAAATACAGAAAAACCATCTCAGAAAAAGGAAAATGGGCAATCGTCATGCTAAAGCGAGCAGTCCTCAGGGTTTTGATGTGGATCGAGATGCCAAAAAGCTGAACAAAGCCTGCAAAGGAATGGGGACCAATGAAGCAGCCATCATTGAAATCTTATCGGGCAGGACATCAGATGAGAGGCAA ...............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HSITI2.1 CAT X07173 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAAAGAAGTGATATCCTCCCCAGACCATCTGCTTTGGGGAGCTTGGCAAAACTGTCCAGCAAAATGAAAAGACTCACGTGCTTTTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAATCCCCATAAATGGACTTTCTGAATTTGTAGACTATGAAGATCTTGTGGAACTGGCCCCAGGCAAATTTCAATTGGTGGCAGAGAACCGG ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSJGEBFR.1 CAT X04772 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGCCAATCGCTCTGGTCGACCCCAACACACTAGGAGGACAGACACAGGCTCCAAACTCCACTAACCAGAGCTGTGATTGTGCCCGCTGAGTGGACTGCGTTGTCAGGGAGTGAGTGCTCCATCATCGGGAGAATCCAAGCAGGACCGCCATGGAGGAAGGTCAATATTCAGAGATCGAGGAGCTTCCCAGGAGGCGGTGTTGCAGGCGTGGGACTCAGATCGTGCTGCTGGGGCTGGTGACCGCCGCTCTGTGGGCTGGGCTGCTGACTCTGCTTCTCCTGTGGCACTGGGACACCACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 HSK4AMR.1 CAT X67683 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGCTCGCTCTCTGCAGCCATGATTGCCAGACAGCAGTGTGTCCGAGGCGGGCCCCGGGGCTTCAGCTGTGGCTCGGCCATTGTAGGCGGTGGCAAGAGAGGTGCCTTCAGCTCAGTCTCCATGTCTGGAGGTGCTGGCCGATGCTCTTCTGGGGGATTTGGCAGCAGA .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSKER19.1 CAT Y00503 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGGGTTGCTCCGTCCGTGCTCCGCCTCGCCATGACTTCCTACAGCTATCGCCAGTCGTCGGCCACGTCGTCCTTCGGAGGCCTGGGCGGCGGCTCCGTGCGTTTTGGGCCGGGGGTCGCTTTTCGCGCGCCCAGCATTCACGGGGGCTCCGGCGGCCGCGGCGTATCCGTGTCCTCCGCC ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 209 HSKRT8.1 CAT X74929 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCTCCTTCTAGGATCTCCGCCTGGTTCGGCCCGCCTGCCTCCACTCCTGCCTCCACCATGTCCATCAGGGTGACCCAGAAGTCCTACAAGGTGTCCACCTCTGGCCCCCGGGCCTTCAGCAGCCGCTCCTACACGAGTGGGCCCGGTTCCCGCATCAGCTCCTCGAGCTTCTCCCGAGTGGGCAGCAGCAACTTTCGCGGTGGCCTG ...........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSKSA.1 CAT X14758 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCACCTTCGACGCGGTCCGGGGACCCCCTCGTCGCTGTCCTCCCGACGCGGACCCGCGTGCCCCAGGCCTCGCGCTGCCCGGCCGGCTCCTCGTGTCCCACTCCCGGCGCACGCCCTCCCGCGCCCCTCTTCTCGGCGCGCGCGCAGCATGGCGCCCCCGCAGGTCCTCGCGTTCGGGCTTCTGCTTGCCGCGGCGACGGCGACTTTTGCCGCAGCTCAGGAAGAATGTGTCTGTGAAAACTACAAGCTGGCCGTAAACTGCTTTGTGAATAATAATCGTCAATGCCAGTGTACTTCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 HSL35A.1 CAT X52966 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCTCTTACCGCCATCTTGGCTCCTGTGGAGGCCTGCTGGAACGGACTTCTAAAAGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTCCGGAACCAAAGGGAGCACACAGCTCTTCTTAAAATTGAAGGTGTTTACGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATGCGCTTATGTA ..............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSLAIL8G.1 CAT X65859 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGTGAAAATTACTTCCATGTAATATACAAGCCAACACAAAGAATCCTATCCCAGTTTCTTGGATGGATAGGCAAGAATCTGGGTAAGGTTTATTGTGCAATAATCCTCTTCTCTCTTCTATAGGCCAGGATTTAAGTTTACCTCAAAAATGGAAAATTTTGGCTGGGAAAATTACATGTGGGAAGACATCTTCAGTGGAGATTTTAGTAATTACAGTTTCAGCTATGACCCTACCCCTTTTCTACTAGATTCTGCCCCATGTTGGCCAGAATCCCTAGAAATCAATTATGTTTTGATC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 295 HSLAL.1 CAT X76488 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTGGCTGAACAAATAGTCCCGAGGGTGGTGCTACCGCCCTCCCGACAAGGCAGACCAGGCCCCCTGCAGGTCCCCTATCCGCACCCCGGCCCCTGAGAGCTGGCACTGCGACTCGAGACAGCGGCCCGGCAGGACAGCTCCAGAATGAAAATGCGGTTCTTGGGGTTGGTGGTCTGTTTGGTTCTCTGGACCCTGCATTCTGAGGGGTCTGGAGGGAAACTGACAGCTGTGGATCCTGAAACAAACATGAATGTGAGTGAAATTATCTCTTACTGGGGATTCCCTAGTGAGGAA .................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 286 HSLAMP2.1 CAT X77196 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGATTCCTGGCTTTTGCAAGGCTGTGGTCGGTGGTCATCAGTGCTCTTGACCCAGGTCCAGCGAGCCTTTTCCCTGGTGTTGCAGCTGTTGTTGTACCGCCGCCGTCGCCGCCGTCGCCGCCTGCTCTGCGGGGTCATGGTGTGCTTCCGCCTCTTCCCGGTTCCGGGCTCAGGGCTCGTTCTGGTCTGCCTAGTCCTGGGAGCTGTGCGGTCTTATGCATTGGAACTTAATTTGACAGATTCAGAAAATGCCACTTGCCTTTATGCAAAATGGCAGATGAATTTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSLARR.1 CAT Y00815 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTGACCGGGGTGAAGAAGCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236 HSLCAR.1 CAT Y00638 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAAATTGTTCCTCGTCTGATAAGACAACAGTGGAGAAAGGACGCATGCTGTTTCTTAGGGACACGGCTGGCTTCCAGATATGACCATGTATTTGTGGCTTAAACTCTTGGCATTTGGCTTTGCCTTTCTGGACACAGAAGTATTTGTGACAGGGCAAAGCCCAACACCTTCCCCCACTGGATTGACTACAGCAAAGATGCCCAGTGTTCCACTTTCAAGTGACCCCTTACCTACT ......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245 HSLDLCP.1 CAT Z34975 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAAACTGGCGGTGGCCGCGGCCGCCGAGTCGGTCTGCGCATCCTCCTGCGTTTTCTCGCTTGGATCTTGGCACTGAGAGGCGGTGGCCGGCGGGATGGAGAAAAGTAGGATGAACCTGCCCAAGGGGCCGGACACGCTCTGCTTCGACAAGGACGAGTTCATGAAGGAAGATTTCGATGTCGATCATTTTGTGTCTGACTGTAGGAAGCGGGTCCAGCTGGAAGAACTGAGAGATGACCTGGAG ...............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSLHRH1.1 CAT X01059 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTTCAGTGTCTGTATGTAAAAACTGACTCTGACTTCCATCTTCTGCAGGGTTAGTGATACAGATGCTAGCTTTTTCACTAAAGAGGTCTTTTAGTTTATACTCAACCTTGTCTGGATCTAATTTGATTGTGCATTCATGTGCCTTAGAATGAAGCCAATTCAAAAACTCCTAGCTGGCCTTATTCTACTGACTTCGTGCGTGGAAGGCTGCTCCAGCCAGCACTGGTCCTATGGACTGCGCCCTGGAGGAAAGAGAGATGCCGAAAATTTGATTGATTCTTTCCAAGAGATAGTCAAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 HSLIF.1 CAT X13967 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCATCTGAGGTTTCCTCCAAGGCCCTCTGAAGTGCAGCCCATAATGAAGGTCTTGGCGGCAGGAGTTGTGCCCCTGCTGTTGGTTCTGCACTGGAAACATGGGGCGGGGAGCCCCCTCCCCATCACCCCTGTCAACGCCACCTGTGCCATACGCCACCCATGTCACAACAACCTCATGAACCAGATCAGGAGC ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSLIFR.1 CAT X61615 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCCAGAACGTGTCTCTGCTGCAAGGCACCGGGCCCTTTCGCTCTGCAGAACTGCACTTGCAAGACCATTATCAACTCCTAATCCCAGCTCAGAAAGGGAGCCTCTGCGACTCATTCATCGCCCTCCAGGACTGACTGCATTGCACAGATGATGGATATTTACGTATGTTTGAAACGACCATCCTGGATGGTGGACAATAAAAGAATGAGGACTGCTTCAAATTTCCAGTGGCTGTTATCAACATTTATTCTTCTATATCTAATGAATCAAGTAAATAGCCAGAAAAAGGGGGCTCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 293 HSLIPAS.1 CAT X54516 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACTTCTAGCTGCCCTGCCATCCCCTTTAAAGGGCGACTTGCTCAGCGCCAAACCGCGGCTCCAGCCCTCTCCAGCCTCCGGCTCAGCCGGCTCATCAGTCGGTCCGCGCCTTGCAGCTCCTCCAGAGGGACGCGCCCCGAGATGGAGAGCAAAGCCCTGCTCGTGCTGACTCTGGCCGTGTGGCTCCAGAGTCTGACCGCCTCCCGCGGAGGGGTGGCCGCCGCCGACCAAAGAAGAGATTTTATCGACATCGAAAGTAAATTTGCCCTAAGGACCCCTGAAGACACAGCT ...............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSLLREP3.1 CAT X17206 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGCGGTGGCTTCCGCGAGGTTTCGGCAGTGGCATTCGGGGCCGGGGTCGCGGCGTGGACGGGGCCGGGGCGAGGCGCGGAGCTCGCGAGGCAAGGCCGAGGATAAGGAGTGGATGCCCGTCACCAAGTTGGGCCGCTTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTCTTCTCCCTGCCCATTAAGGAATCAGAGATCATTGATTTCTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 183 HSLON.1 CAT X74215 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGGAAGGCCCGGTCATAACGGCGCTCACGCCCATGACGATCCCCGATGTGTTTCCGCACCTGCCGCTCATCGCCATCACCCGCAACCCGGTGTTCCCGCGCTTTATCAAGATTATCGAGGTTAAAAATAAGAAGTTGGTTGAGCTGCTGAGAAGGAAAGTTCGTCTCGCCCAGCCTTATGTC .................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 HSLPH.1 CAT X07994 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTCCTAGAAAATGGAGCTGTCTTGGCATGTAGTCTTTATTGCCCTGCTAAGTTTTTCATGCTGGGGGTCAGACTGGGAGTCTGATAGAAATTTCATTTCCACCGCTGGTCCTCTAACCAATGACTTGCTGCACAACCTGAGTGGTCTCCTGGGAGACCAG ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 255 HSLRPGENE.1 CAT X79882 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCGAGATCCATTGTGCTGGAAAGGTTCCCCATCTGAGGCGTTTGTTGCAGCTACCTGCACTTCTAGATTCATCTTCTTGTGAGCCCTGGGCTTAGGAGTCACCATGGCAACTGAAGAGTTCATCATCCGCATCCCCCCATACCACTATATCCATGTGCTGGACCAGAACAGCAACGTGTCCCGTGTGGAGGTCGGGCCAAAGACCTACATCCGGCAGGACAATGAGAGGGTACTGTTTGCCCCCATGCGCATG .........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSLTK.1 CAT X60702 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTTAGGTCCGGGGAGTGTCTCGCCAGCGGCAGCACACCCCTGTAAGTGGTGGCCAGGGCTGCCGTGGCAAAATGAGCTGTCAACTTTAGGTTGACAGGGGTGTGGCCGCGACCGCAAGGGCTTTTGTTGCCGGGTGGACCCAACAGGGATGGGCTGCTGGGGACAGCTGCTGGTGTGGTTCGGAGCCGCGGGCGCCATTCTCTGCTCTAGCCCGGGGTCCCAGGAGACTTTTCTGCGGTCCTCGCCCCTGCCGCTGGCAAGTCCCAGCCCCCGGGACCCGAAAGTCAGCGCCCCGCCT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241 HSLYAM1.1 CAT X16150 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCCTTTGGGCAAGGACCTGAGACCCTTGTGCTAAGTCAAGAGGCTCAATGGGCTGCAGAAGAACTAGAGAAGGACCAAGCAAAGCCATGATATTTCCATGGAAATGTCAGAGCACCCAGAGGGACTTATGGAACATCTTCAAGTTGTGGGGGTGGACAATGCTCTGTTGTGATTTCCTGGCACATCATGGAACCGACTGCTGGACTTACCATTATTCTGAAAAACCCATGAACTGG ...........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 207 HSM6.1 CAT X64364 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCGCGGGCGGCGGCGGCAGCGGTTGGAGGTTGTAGGACCGGCGAGGAATAGGAATCATGGCGGCTGCGCTGTTCGTGCTGCTGGGATTCGCGCTGCTGGGCACCCACGGAGCCTCCGGGGCTGCCGGCACAGTCTTCACTACCGTAGAAGACCTTGGCTCCAAGATACTCCTCACCTGCTCCTTGAATGACAGCGCCACAGAGGTC .........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSMAST9.1 CAT X86693 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGAAGCAGAGCTAACGAGGAAAGGGATTTAAAGAGTTTTTCTTGGGTGTTTGTCAAACTTTTATTCCCTGTCTGTGTGCAGAGGGGATTCAACTTCAATTTTCTGCAGTGGCTCTGGGTCCAGCCCCTTACTTAAAGATCTGGAAAGCATGAAGACTGGGCCTTTTTTCCTATGTCTCTTGGGAACTGCAGCTGCAATCCCGACAAATGCAAGATTATTATCTGATCATTCCAAACCAACTGCTGAAACGGTAGCACCTGACAACACTGCAATCCCCAGTTTATGGGCTGAAGCTGAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSMB1GENE.1 CAT X95586 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCTTCTTTTTGGAGGCGTGCTTGCCAGCAGTCAAAATGGCTCCATTCCGGAATAGATTTAATAGGAAGTGAAGCTGTGACGGCGAGGCGTTGCCCGGCCTATCTTTGCTAGGCGTTCTCAGAATTAGTTCTTTCTGCCCACACTAGACATGGCGCTTGCCAGCGTGTTGGAGAGACCGCTACCGGTGAACCAGCGCGGGTTTTTCGGACTTGGGGGTCGTGCAGATCTGCTGGATCTAGGTCCAGGGAGTCTCAGTGATGGTCTGAGCCTGGCCGCGCCAGGCTGGGGTGTCCCAGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218 HSMBP1A.1 CAT X15954 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCGGTAAATATGTGTTCATTAACTGAGATTAACCTTCCCTGAGTTTTCTCACACCAAGGTGAGGACCATGTCCCTGTTTCCATCACTCCCTCTCCTTCTCCTGAGTATGGTGGCAGCGTCTTACTCAGAAACTGTGACCTGTGAGGATGCCCAAAAGACCTGCCCTGCAGTGATTGCCTGTAGCTCTCCAGGCATCAACGGCTTCCCAGGCAAAGAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSMCP.1 CAT Y00651 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTGCTTTCCTCCGGAGAAATAACAGCGTCTTCCGCGCCGCGCATGGAGCCTCCCGGCCGCCGCGAGTGTCCCTTTCCTTCCTGGCGCTTTCCTGGGTTGCTTCTGGCGGCCATGGTGTTGCTGCTGTACTCCTTCTCCGATGCCTGTGAGGAGCCACCAACATTTGAAGCTATGGAGCTCATTGGTAAACCA ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254 HSMCR30.1 CAT X94629 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTCGCTGGATTTTTAAGAGCGCGTTATTATTTAACGCACCGACAAAAGTATAGCCCTGAAACGTTTGAAGTGGCCTCATTCTTCTTAGATGATGTCATTGCGATGATGGTTAACCATAACTTTACCAGCTTCACGAGCAATGAACGGGCGGTCGTTAAGTTAAATGAAGTCATGCAAGCCGCATTGGTCAATAGTGATGATCGCGATTGGCGTTACTTTGTGATGCTTGTGCCAGTGCTTTATGACATGCAA ........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251 HSMDNCF.1 CAT Y00787 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCATAAGGCACAAACTTTCAGAGACAGCAGAGCACACAAGCTTCTAGGACAAGAGCCAGGAAGAAACCACCGGAAGGAACCATCTCACTGTGTGTAAACATGACTTCCAAGCTGGCCGTGGCTCTCTTGGCAGCCTTCCTGATTTCTGCAGCTCTGTGTGAAGGTGCAGTTTTGCCAAGGAGTGCTAAAGAACTTAGATGTCAGTGCATAAAGACATACTCCAAACCTTTCCACCCCAAATTTATCAAA .....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSME491.1 CAT X07982 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCTTGGGAAGCCCAGGCCCGGCAGCCATGGCGGTGGAAGGAGGAATGAAATGTGTGAAGTTCTTGCTCTACGTCCTCCTGCTGGCCTTTTGCGCCTGTGCAGTGGGACTGATTGCCGTGGGTGTCGGGGCACAGCTTGTCCTGAGTCAGACCATAATCCAGGGGGCTACCCCTGGC ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224 HSMEHR.1 CAT X07936 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGGGAAAGTTGCACATTTATATCCTAGAGGGAAGCGACACGAGTGCTTCTCCCTGTGCTGAGGTACAGGAGCCATGTGGCTAGAAATCCTCCTCACTTCAGTGCTGGGCTTTGCCATCTACTGGTTCATCTCCCGGGACAAAGAGGAAACTTTGCCACTTGAAGATGGGTGGTGGGGGCCAGGCACGAGGTCCGCAGCCAGGGAGGACGACAGCATCCGCCCT ..........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSMGLUR3.1 CAT X77748 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGAATTTTGTGACAGGCTCTGTTAGTCTGTTCCTCCCTTATTTGAAGGACAGGCCAAAGATCCAGTTTGGAAATGAGAGAGGACTAGCATGACACATTGGCTCCACCATTGATATCTCCCAGAGGTACAGAAACAGGATTCATGAAGATGTTGACAAGACTGCAAGTTCTTACCTTAGCTTTGTTTTCAAAGGGATTTTTACTCTCTTTAGGGGACCATAACTTTCTAAGGAGAGAGATTAAAATAGAAGGTGACCTTGTTTTAGGGGGCCTGTTTCCTATTAACGAAAAAGGCACT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSMHCAPG.3 CAT X66401 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGACCCCGTGGAAAGATTCAGAGACTGCGCCCTCTCCCTGGCGCCGCCTTCCCCTACACGCGGCGGGTATATTCTGTTGCAGTTGGCCCAGGACCTGTTTCCAAGACTCTGCCCCCTCGCACTTCCGTCCCTCCTGGTTTTGTAAAGTGATGCTCATAGGAACCCCCACCCCGCGTGACACTACTCCCAGCTCCTGGCTGACTTCTAGTCTTCTGGTTGAAGCTGCGCCTTTAGATGACACGACCCTACCCACCCCTGTTTCCAGCGGATGCCCGGGCCTGGAGCCCACAGAATTCTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSMHCHHS.1 CAT X55777 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGCTTAATAGAAAATATGAGCAACATACACAAACATTAGCAACAATGATATAAAATACCACTTAAACATAAGGAAAAATGTTGCCCTTCACTTGTGGAAGAAATGCAAATGAAAACAGCCCTAGGGATGTTGACGTTGGGGTGGCACCTGCTGCAGAGGGTAACGTGCAGCATGTCGAGGGCAGCACTGCCAAGGCTGGTTTGAGCTCAAGGTCAGGTGGAGGAGGT ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSMIMPA.1 CAT X66922 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCGACTCAAGATATTTGTCAAATATTTTCAGAAGATGGCTGATCCTTGGCAGGAATGCATGGATTATGCAGTAACTCTAGCAAGACAAGCTGGAGAGGTAGTTTGTGAAGCTATAAAAAATGAAATGAATGTTATGCTGAAAAGTTCTCCAGTTGATTTGGTAACTGCTACGGACCAAAAAGTT ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238 HSMKI67A.1 CAT X65551 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAAGAGTTGTAAATTTGCTTCTGGCCTTCCCCTACGGATTATACCTGGCCTTCCCCTACGGATTATACTCAACTTACTGTTTAGAAAATGTGGCCCACGAGACGCCTGGTTACTATCAAAAGGAGCGGGGTCGACGGTCCCCACTTTCCCCTGAGCCTCAGCACCTGCTTGTTTGGAAGGGGTATTGAATGTGACATCCGTATCCAGCTTCCTGTTGTGTCAAAACAACATTGCAAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSMLCK.1 CAT X85337 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAAGAGGCGCGTGGAGACGAGGCAGCCAACTGAGGAGGCGATCCCCGAGCAGGAGGTGGAGCAGCTGGACTTCCGAGACCTCCTGGGGAAGAAGGTGAGTACAAAGACCCTATCGGAAGACGACCTGAAGGAGATCCCAGCCGAGCAGATGGATTTCCGCGCCAACCTGCAGCGGCAAATGAAGCCAAAGACTGTGTCTGAGGAAGAGAGGAAGGTGCACAGCCCCCAGCAGGTCGATTTTCGCTCTGTCCTGGCCAAGAAGGGGACTTCCAAGACCCCCGTGCCTGAGAAGGTGCCA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235 HSMLN62.1 CAT X80200 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCGGGAGCGCCGCTCCAGCGAGGCGCGGGCTGTGGGGCCGCCGCGTGCCTGGCCCCGCTCGCCCGTGCCGGCCGCTCGCCCGCCATGCCTGGCTTCGACTACAAGTTCCTGGAGAAGCCCAAGCGACGGCTGCTGTGCCCACTGTGCGGGAAGCCCATGCGCGAGCCTGTGCAGGTTTCCACCTGCGGCCACCGTTTCTGCGATACCTGCCTGCAGGAGTTCCTCAGTGAAGGA .....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 185 HSMRACP5.1 CAT X14618 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAGCCTCCGGTGACTGGCCTGTGTCTCCCCCTGGATGGACATGTGGACGGCGCTGCTCATCCTGCAAGCCTTGTTGCTACCCTCCCTGGCTGATGGTGCCACCCCTGCCCTGCGCTTTGTAGCCGTGGGTGACTGGGGAGGGGTCCCCAATGCCCCATTCCACACGGCCCGGGAAATGGCCAAT ...................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226 HSMRL3R.1 CAT X06323 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTGGCGTGGGGACTCCCTGAAAGCAGAGCGGCAGGGCGCCCGGAAGTCGTGAGTCGAGTCTTCCCGGGCTAATCCATGCCGGGTTGGAGGCTGCTGACGCAGGTCGGCGCCCAGGTGCTGGGTCGACTCGGGGACGGCCTGGGTGCTGCCCTGGGCCCGGGGAACAGAACACACATCTGGCTTTTTGTTAGAGGTCTTCATGGAAAGAGTGGTACATGGTGGGAT ............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 167 HSMRNAEN.1 CAT X07166 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAAGTCAGAAAGTCAGATGGATATAACTGATATCAACACTCCAAAGCCAAAGAAGAAACAGCGATGGACTCCACTGGAGATCAGCCTCTCGGTCCTTGTCCTGCTCCTCACCATCATAGCTGTGACAATGATCGCACTCTATGCAACCTACGATGATGGTATTTGC .................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 HSMRP14.1 CAT X06233 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAACACTCTGTGTGGCTCCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGGAACGCAACATAGAGACCATCATCAACACCTTCCACCAATACTCTGTGAAGCTGGGGCACCCAGACACCCTGAACCAGGGGGAATTCAAAGAGCTGGTGCGAAAAGATCTGCAAAATTTTCTCAAG ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 206 HSMRP8.1 CAT X06234 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGTCTCTTGTCAGCTGTCTTTCAGAAGACCTGGTGGGGCAAGTTCCGTGGGCATCATGTTGACCGAGCTGGAGAAAGCCTTGAACTCTATCATCGACGTCTACCACAAGTACTCCCTGATAAAGGGGAATTTCCATGCCGTCTACAGGGATGACCTGAAGAAATTGCTAGAGACCGAGTGTCCTCAGTATATCAGGAAAAAGGGT ........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSMSSP2.1 CAT X77494 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TATCTGCAAGCCAAGTTTGGAAGGCATTCGGGAATACCAAGTGAAAAGGAAGAGTGAAGAACAGAAAAATGTTAGTGGGATGGCAAACACTGTGAACATTGCTGTTTCTAGTGGGCCAGAAAAATCAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAGCTCTGTCAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232 HSMTFMR.1 CAT X78710 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTGCTGCCGCCGTTGCCGGGAGCCGCGGAGACAAGTCATTACGTTTTCATTTCTCACAACTGGGCTGAGCACAACTGAACCATGGGGGAACACAGTCCAGACAACAACATCATCTACTTTGAGGCAGAGGAAGATGAGCTGACCCCCGATGATAAAATGCTCAGGTTTGTGGATAAAAACGGACTGGTGCCTTCCTCATCTGGAACTGTTTATGATAGGACCACTGTTCTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236 HSMTP1.1 CAT X59657 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTCCCTCACTGGCTGCCATTGAAAGAGTCCACTTCTCAGTGACTCCTAGCTGGGCACTGGATGCAGTTGAGGATTGCTGGTCAATATGATTCTTCTTGCTGTGCTTTTTCTCTGCTTCATTTCCTCATATTCAGCTTCTGTTAAAGGTCACACAACTGGTCTCTCATTAAATAATGACCGGCTGTACAAGCTCACGTACTCCACTGAAGTTCTTCTTGATCGGGGCAAAGGAAAA ......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSMYLC2.1 CAT X66141 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCTCGGGAGGCAGTCTGGGTCCTTCCACCATGGCACCTAAGAAAGCAAAGAAGAGAGCCGGGGGCGCCAACTCCAACGTGTTCTCCATGTTCGAACAGACCCAAATCCAGGAATTTAAGGAGGCCTTCACTATCATGGACCAGAACAGGGATGGCTTCATTGACAAGAACGATCTGAGA ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 270 HSMYOD.1 CAT X56677 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTCAGACTGCCAGCACTTTGCTATCTACAGCCGGGGCTCCCGAGCGGCAGAAAGTTCCGGCCACTCTCTGCCGCTTGGGTTGGGCGAAAGCCAGGACCGTGCCGCGCCACCGCCAGGATATGGAGCTACTGTCGCCACCGCTCCGCGACGTAGACCTGACGGCCCCCGACGGCTCTCTCTGCTCCTTTGCCACAACGGACGACTTCTATGACGACCCGTGTTTCGACTCCCCGGACCTGCGCTTCTTCGAAGACCTGGACCCGCGCCTG ........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNEFAP.1 CAT X76732 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTACGAGTCAGTTTTTAGTGAGAAAACATTGAGCTAGGAGCCAAGACCCATCTCTTCACTATTTTGGTATTGTGCAAGTCATCTTACCTCTCTGGATCTCAGTTGTCTCATCTGTAAAAAGGAGATAAAAATTATTTACCTGCCTGAACATGAGGTGGAGGACCATCCTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTACTGCTCTTGAAGCTGTGCCTATTGACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAAAGTGCGAAGATAGAACCACCAGATACT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNETTF.1 CAT Z36715 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGAGAGAAAGAAAAAAAGGGGGAAAAATCAGGATCTCATTACAAGAGCCACAGACCGTCTGCAGACGCCTGTCAGCATGGAAAGTCGGGGGCTTTCGCCCGGGTCCTCCTAGAAATTCCCCCCGAAGAAGACTCCCCCACATCTGGGTATGGAGAGTGCAATCACGCTGTGGCAGTTCCTGTTGCAGTTGCTGCTGGATCAGAAACATGAGCATTTGATCTGCTGGACCTCGAACGATGGTGAATTCAAGCTCCTCAAAGCAGAAGAAGTGGCCAAGCTGTGGGGACTCCGAAAAAAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNEURK1.1 CAT X65172 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGCAGGGATTGCAGTATCTTTCAGCTTCCAGTCTTATCTGAAGACTCCGGCACCAAAGTGACCAGGAGGCAGAGAAGAACTTCAGAGGAGTCTCGTCTTGGGCTGCCCGTGGGTGAGTGGGAGGGTCCGGGACTGCAGACCGGTGGCGATGGCCACTCTCCCAGCAGCAGAAACCTGGATAGACGGGGGTGGAGGCGTGGGTGCAGACGCCGTGAACCTGACCGCCTCGCTAGCTGCCGGGGCGGCCACGGGGGCAGTTGAGACTGGGTGGCTGCAACTGCTGGACCAAGCTGGCAAC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNFKBSU.1 CAT X61499 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCCCGGCCAAGCCCAACTCCGGATCTCGCTCTCCACCGGATCTCACCCGCCACACCCGGACAGGCGGCTGGAGGAGGCGGGCGTCTAAAATTCTGGGAAGCAGAACCTGGCCGGAGCCACTAGACAGAGCCGGGCCTAGCCCAGAGACATGGAGAGTTGCTACAACCCAGGTCTGGATGGTATTATTGAATATGATGATTTCAAATTGAACTCCTCCATTGTGGAACCCAAGGAGCCAGCCCCAGAAACAGCTGATGGCCCCTACCTGGTGATCGTGGAACAGCCTAAGCAGAGAGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245 HSNFLG.1 CAT X05608 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCGCACACAGCCATCCATCCTCCCCCTTCCCTCTCTCCCCTGTCCTCTCTCTCCGGGCTCCCACCGCCGCCGGGGAGCACCGGCCGCCAACCAATGAGTTCCTTCAGCTACGAGCCGTACTACTCGACCTCCTACAAGCGGCGCTACGTGGAGACGCCCCGGGTGCATATCAGCGTGCGCAGCGGCTACAGCACCGCACGCTCAGCTTACTCAAGCTACTCGGCGCCGGTGTCTTCCTCGCTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNKG2B.1 CAT X54868 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTTGTCTTGGATTTATGCCTTTAAATTTCACCTTTTATTACACAGCTATAGCAGGCCTTTTTATGAGACTAACCTGGCCTCTCCACTAAAGGATGTGTGACTTTCTGGGGACAGAAGAGTACAGTCCCTGACATCACACACTGCAGAGATGGATAACCAAGGAGTAATCTACTCAGACCTGAATCTGCCCCCAAACCCAAAGAGGCAGCAACGAAAACCTAAAGGCAATAAAAGCTCCATTTTAGCAACTGAACAGGAAATAACCTATGCGGAATTAAACCTTCAAAAAGCTTCTCAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNKG2D.1 CAT X54870 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCAGGAACTGAGGACATATCTAAATTTTCTAGTTTTATAGAAGGCTTTTATCCACAAGAATCAAGATCTTCCCTCTCTGAGCAGGAATCCTTTGTGCATTGAAGACTTTAGATTCCTCTCTGCGGTAGACGTGCACTTATAAGTATTTGATGGGGTGGATTCGTGGTCGGAGGTCTCGACACAGCTGGGAGATGAGTGAATTTCATAATTATAACTTGGATCTGAAGAAGAGTGATTTTTCAACACGATGGCAAAAGCAAAGATGTCCAGTAGTCAAAAGCAAATGTAGAGAAAATGCA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234 HSNM23H1A.1 CAT X73066 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGCTGCGAACCACGTGGGTCCCGGGCGCGTTTCGGGTGCTGGCGGCTGCAGCCGGAGTTCAAACCTAAGCAGCTGGAAGGAACCATGGCCAACTGTGAGCGTACCTTCATTGCGATCAAACCAGATGGGGTCCAGCGGGGTCTTGTTGGAGAGATTATCAAGCGTTTTGAGCAGAAAGGATTCCGCCTTGTGGGTCTGAAATTCATGCAAGCTTCCGAAGATCTTCTCAAGGAA ....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241 HSNMB.1 CAT X76534 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGATGCCAGAAGAACACTGTTGCTCTTGGTGGACGGGCCCAGAGGAATTCAGAGTTAAACCTTGAGTGCCTGCGTCCGTGAGAATTCAGCATGGAATGTCTCTACTATTTCCTGGGATTTCTGCTCCTGGCTGCAAGATTGCCACTTGATGCCGCCAAACGATTTCATGATGTGCTGGGCAATGAAAGACCTTCTGCTTACATGAGGGAGCACAATCAATTAAATGGCTGGTCTTCTGAT ...........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 HSNMTDC.1 CAT X16396 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTGCGACTTCTCTAATGTCTGCTTTGGCTGCCCGGCTGCTGCAGCCCGCGCACAGCTGCTCCCTTCGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGAAATGAAGCTGTTGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGCGGCAGGAG ...............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNMYC.1 CAT Y00664 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTTTCCTCTCCTTTCTCCCTCCCCCTTGTCTGCGCCACAGCCCCCTTCTCTCCCCGCCCCCCGGGTGTGTCAGATTTTTCAGTTAATAATATCCCCCGAGCTTCAAAGCGCAGGCTGTGACAGTCATCTGTCTGGACGCGCTGGGTGGATGCGGGGGGCTCCTGGGAACTGTGTTGGAGCCGAGCAAGCGCTAGCCAGGCGCAAGCGCGCACAGACTGTAGCCATCCGAGGACACCCCCGCCCCCCCGGCCCACCCGGAGACACCCGCGCAGAATCGCCTCCGGATCCCCTGCAGTCG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 264 HSNOV.1 CAT X92396 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGCCGGTCCAGCCTCCTCTGGGAGCGGGCAGTTGGCGACCCTGCACTGACCCGCGTCCCTCCGTCCCGAGCCCGCGCGCCCTCAGAGGGTGCCCGGACAGACTGAAGCCATGGCGATTCTTTTTGCTGTTGTTGCCAGGGGGACCACTATCCTTGCCAAACATGCTTGGTGTGGAGGAAACTTCCTGGAGGTGACAGAGCAGATTCTGGCTAAGATACCTTCTGAAAATAACAAACTAACGTACTCACATGGCAATTAT ..................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNP62.1 CAT X58521 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAGAAATCTTCCCAAGGCTGCAGACACCGACGGATTTGCTTTGGGAGCCAGAGTAGCTGCCGCCACCAGAGTCCGGAGCCATGAGCGGCTTTAATTTTGGAGGCACTGGGGCCCCTACAGGCGGGTTCACGTTTGGCACTGCAAAGACGGCAACAACCACACCTGCTACAGGGTTTTCTTTCTCCACCTCTGGCACTGGAGGGTTTAATTTTGGGGCTCCCTTCCAACCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSNRNPE.1 CAT X12466 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTCTCAGAGGCAGCGTGCGGGTGTGCTCTTTGTGAAATTCCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAAGGTTATGGTGCAGCCCATCAACCTCATCTTCAGATACTTACAAAATAGATCGCGGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATAGAAGGCTGTATCATTGGTTTT .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 HSNUCPP.1 CAT Z34289 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGTGGGTCGTGCTGCGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGATGGCGGACGCCGGCATTCGCCGCGTGGTTCCCAGCGACCTGTATCCCCTCGTGCTCGGCTTCCTGCGCGATAACCAACTCTCAGAGGTGGCCAATAAGTTCGCCAAAGCGACAGGAGCTACACAGCAGGATGCCAATGCCTCTTCCCTC ......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSNUCREC.1 CAT X89894 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAAGCCCGGGCCCTGAGCCTGGACCCTTAGCGGTGCCGGGCAGCACTGCCGGCGCTTCGCCTCGCCGGACGTCCGCTCCTCCTACACTCTCAGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAGATATGCCCTGCGTCCAAGCCCAATATAGCCCTTCCCCTCCAGGTTCCAGTTATGCGGCGCAGACATACAGCTCGGAATACACCACGGAGATCATGAACCCCGACTACACCAAGCTGACCATGGACCTTGGCAGCACTGAGATCACGGCTACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 209 HSOCT1.1 CAT X13403 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGAGCAGCGAGTCAAGATGAGAGTTCAGCCGCGGCGGCAGCAGCAGCAGACTCAAGAATGAACAATCCGTCAGAAACCAGTAAACCATCTATGGAGAGTGGAGATGGCAACACAGGCACACAAACCAATGGTCTGGACTTTCAGAAGCAGCCTGTGCCTGTAGGAGGAGCAATCTCAACAGCCCAGGCGCAGGCTTTCCTTGGACAT ...........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSORGP.1 CAT X63118 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTAGGGCCAGTAAGGCATTTGATCCACATGTATCCCAGAAGGCTTTTATTGTTAAATTATATTCTTTCGGAAAAACCACCCATGTCCTATTTTGTAAACTTGATATCCATACACTTTTGACTGGCATTCTATTTTAGCCGTAAGACTATGATTCACAGCAAGCCTGTTTTTCCTCTTGCTTGGGGTGGCAGCAGAAGCATAGGTACTTCAGCTCAGGTAGGGCAAGGGCTGGTTCTCTCCAGTACAGCTTTCTCTGGCTGTGCCACACTGCTCCCTGTGAGCAGACAGCAAGTCTCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSORL1.1 CAT X77130 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCTGGCGTCTGCTGAGAAGATCCTCTTCTACCCTGCTCTGCACCTGTGCTCGACTGCCAGCCGGCTGAGGGCGGGGGTCTCCACGGTGGTCCCAGCTCCCAAGGAGGTTGCAGAAGTACCGTACAGAGTGGATTTGCAGGGCAGTGGCATGGAGCCCCTCTTCCCCGCGCCGTTCTGGGAGGTTATCTACGGCAGCCACCTTCAGGGCAACCTGTCCCTCCTGAGCCCCAACCACAGTCTGCTGCCCCCGCATCTGCTGCTCAATGCCAGCCACGGCGCCTTCCTGCCCCTCGGGCTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSOTF2A.1 CAT X13809 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTCACTCCAGCATGGGGGCTCCAGAAATAAGAATGTCTAAGCCCCTGGAGGCCGAGAAGCAAGGTCTGGACTCCCCATCAGAGCACACAGACACCGAAAGAAATGGACCAGACACTAATCATCAGAACCCCCAAAATAAGACCTCCCCATTCTCCGTGTCC ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251 HSOTF3BMR.1 CAT Z11899 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTAGTCCTTTGTTACATGCATGAGTCAGTGAACAGGGAATGGGTGAATGACATTTGTGGGTAGGTTATTTCTAGAAGTTAGGTGGGCAGCTCGGAAGGCAGATGCACTTCTACAGACTATTCCTTGGGGCCACACGTAGGTTCTTGAATCCCGAATGGAAAGGGGAGATTGATAACTGGTGTGTTTATGTTCTTACAAGTCTTCTGCCTTTTAAAATCCAGTCCCAGGACATCAAAGCTCTGCAGAAAGAA .....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238 HSOX19GEN.1 CAT X95463 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAGAACCGCCAGCGAGCTGTGCCGAGAGCCGCGCCGACCCGCTGCGATCAGGGACAGGCGCCCGCCGCCGCCGCCGCCTGGCCGCTATGGATCTATTCGACTTTTTCAGAGACTGGGACTTGGAGCAGCAGTGTCACTATGAACAAGACCGTAGTGCACTTAAAAAAAGGGAATGGGAGCGGAGGAATCAAGAAGTCCAGCAAGAAGACGATCTCTTTTCTTCAGGCTTTGATCTT ........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230 HSOXYGR.1 CAT X06985 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCAACGCCTGCCTCCCCTCGAGCGTCCTCAGCGCAGCCGCCGCCCGCGGAGCCAGCACGAACGAGCCCAGCACCGGCCGGATGGAGCGTCCGCAACCCGACAGCATGCCCCAGGATTTGTCAGAGGCCCTGAAGGAGGCCACCAAGGAGGTGCACACCCAGGCAGAGAATGCTGAGTTCATGAGGAACTTTCAGAAGGGCCAGGTGACCCGAGACGGCTTCAAGCTGGTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSP2Y6.1 CAT X97058 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCAAGCGAGGCACTTGCTAACTCTTGGATAACAAGACCTCTGCCAGAAGAACCATGGCTTTGGAAGGCGGAGTTCAGGCTGAGGAGATGGGTGCGGTCCTCAGTGAGCCCCTGCCTCCCTGAACATAGGAAACCCACCTGGGCAGCCATGGAATGGGACAATGGCACAGGCCAGGCTCTGGGCTTGCCACCCACCACCTGTGTCTACCGCGAGAACTTCAAGCAACTGCTGCTGCCACCTGTGTATTCGGCGGTGCTGGCGGCTGGCCTGCCGCTGAACATCTGTGTCATTACCCAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247 HSP35R.1 CAT X80343 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAACTCAGAATTTTCGCGGGCTCGGTGAGCGGTTTTATCCCTCCGGCCGGCAGGCTGGGCGCAGGGGGCGAGCCCCCGCCCGGCGCGCAGCAGCACCATGGGCACGGTGCTGTCCCTGTCTCCCAGCTACCGGAAGGCCACGCTGTTTGAGGATGGCGCGGCCACCGTGGGCCACTATACGGCCGTACAGAACAGCAAGAACGCCAAGGACAAGAACCTGAAGCGCCACTCCATCATCTCCGTGCTG .................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 288 HSP5CS.1 CAT X94453 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGGACGTGGACGGAAGAAAAAAGAGAGTGAGCGAGCGCCGGAATCAGCCCGGCGTGGAGTGCGGACCCGCGGTAGTGCCAGGGGGCGAAGGCGGCGGTGGTGAGGAAGATACTTTGGTTAGTGACCACATCGCAGCATGTTGAGTCAAGTTTACCGCTGTGGGTTCCAGCCCTTCAACCAACATCTTCTGCCCTGGGTCAAGTGTACAACCGTCTTCAGATCTCATTGTATCCAGCCTTCAGTCATCAGACATGTTCGTTCTTGGAGCAACATCCCGTTTATCACT ..........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233 HSP64CLCP.1 CAT X87689 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAACAACCGCAGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCCAAGATTGGGAACTGCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAAAGGCGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAGATTGAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 HSPACO.1 CAT X71440 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGGTCGTCGCCATGAACCCGGACCTGCGCAGGGAGCGGGATTCCGCCAGCTTCAACCCGGAGCTGCTTACACACATCCTGGACGGCAGCCTCGAGAAAACCCGGCGCCGCCGAGAGATCGAGAACATGATCCTGAACGACCCAGACTTCCAGCATGAGGAC .............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPAIP.1 CAT X91809 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCACGCCCCCCTTTCGGCAGCCAGGGTGGGGCCCAGACCCAACCTGGCCCCTCCTGCCCCCACCCCGCCTTTGGGTCGCTGACCCCCAGGCTGTGGTGAGGGTCTGAGAGCTGGTACCACGGAGCCTGGGCAACCTCCTCCGCCCACCCATGCCCACCCCGCATGAGGCTGAGAAGCAGATCACAGGGCCAGAGGAGGCGGACCGGCCCCCTTCAATGTCCAGTCATGATACAGCCTCTCCAGCGGCCCCCAGCCGCAACCCCTGCTGCCTGTGCTGGTGCTGCTGCTGTAGCTGCTCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 258 HSPAR.1 CAT X13097 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGGAGCTCAGAGCTGAGATCCTACAGGAGTCCAGGGCTGGAGAGAAAATCCCTGCGAGGAAAGGGAAGGAGCAAGCCGTGAATTTAAGGGACGCTGTGAAGCAATCATGGATGCAATGAAGAGAGGGCTCTGCTGTGTGCTGCTGCTGTGTGGAGCAGTCTTCGTTTCGCCCAGCCAGGAAATCCATGCCCGATTCAGAAGAGGAGCCAGATCTTACCAAGTGATCTGCAGAGATGAAAAAACGCAGATGATATAC ............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 206 HSPARVAL.1 CAT X63070 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCAGCCCAGCCTTTCAGTGCAGGCTCCAGCCCTCCACCCCCACCCGAGTTGCAGGATGTCGATGACAGACTTGCTGAACGCTGAGGACATCAAGAAGGCGGTGGGAGCCTTTAGCGCTACCGACTCCTTCGACCACAAAAAGTTCTTCCAAATGGTCGGCCTGAAGAAAAAGAGTGCGGATGATGTGAAGAAGGTGTTTCACATG ........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 176 HSPBEF.1 CAT U02020 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGCGGCCCCTGTCCTCCGGCCCGAGATGAATCCTGCGGCAGAAGCCGAGTTCAACATCCTCCTGGCCACCGACTCCTACAAGGTTACTCACTATAAACAATATCCACCCAACACAAGCAAAGTTTATTCCTACTTTGAATGCCGTGAAAAGAAGACAGAAAACTCCAAATTAAGG MMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 203 HSPCAD.1 CAT X63629 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGAACACCGGCCCGCCGTCGCGGCAGCTGCTTCACCCCTCTCTCTGCAGCCATGGGGCTCCCTCGTGGACCTCTCGCGTCTCTCCTCCTTCTCCAGGTTTGCTGGCTGCAGTGCGCGGCCTCCGAGCCGTGCCGGGCGGTCTTCAGGGAGGCTGAAGTGACCTTGGAGGCGGGAGGCGCGGAGCAGGAGCCCGGCCAGGCG .....................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220 HSPCCBA.1 CAT X73424 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCGCCGTACCCACGCTTTAGCACATGCGTACTCAGGTGCGCCGGTAGGGGACGCGCCGGCACAGCAAAAATGGCGGCGGCATTACGGGTGGCGGCGGTCGGGGCAAGGCTCAGCGTTCTGGCGAGCGGTCTCCGCGCCGCGGTCCGCAGCCTTTGCAGCCAGGCCACCTCTGTTAACGAACGCATCGAAAACAAGCGCCGGACCGCGCTGCTGGGAGGG ......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPDE1C1A.1 CAT U40371 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTTCTGTGGCGGGTGCGAGAGTGAGGCTGTGGGGGACCTCCAGGCCGAACCTCCGCGAAGCCTCGCGGCTTCTGCGTGCCCTGGCCCCGGGAGGATAAGGATTTCCCTTCCCTCCTACTTGCGCGCGGAGCCGAGCTCTTGTTGAGCTATGGAGTCGCCAACCAAGGAGATTGAAGAATTTGAGAGCAACTCTCTGAAATACCTGCAACCGGAACAGATCGAGAAAATCTGGCTTCGGCTCCGCGGGCTGAGGAAATATAAGAAAACGTCCCAGAGATTACGGTCTTTGGTCAAACAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 261 HSPDE4C1.1 CAT Z46632 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGTCTGCGGACCGTTCGGAGCAACGTGGCGGCCCTTGCCCGCCAGCAATGCCTAGGAGCAGCCAAGCAGGGACCCGTCGGAAACCCTTCATCCAGCCTTTCTCTGGCGCATGGAGAACCTGGGGGTCGGCGAAGGGGCAGAGGCTTGCAGCAGGTTGAGTCGCTCTCGCGGCCGCCACAGCATGACCAGAGCCCCGAAGCACCTGTGGCGGCAACCCCGGCGCCCCATCCGCATCCAACAGCGCTTCTATTCGGATCCG ...............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 HSPDGFBB.1 CAT X63966 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGCTTACCTGCTATGTCCTTGGGTTCGTTAACCATCGCTGAACCGGCTATGATCGCCGAATGTAAGACGCGTACCGAAGTTTTCGAAATCTCGAGACGTTTGATTGACCGCACCAACGCCAACTTCCTGGTTTGGCCGCCATGTGTTGAAGTCCAACGCTGC .............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220 HSPGK2G.1 CAT X05246 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCCCTCAACAGCAAGTTGGTTCTTCAGCATTAAGATCCAGGTGTCAGCCTATGTCTTTATATTGTCAAGATGTCTCTTTCTAAGAAGTTGACTTTAGACAAACTGGATGTTAGAGGGAAGCGAGTCATCATGAGAGTAGACTTCAATGTTCCCATGAAGAAGAACCAGATTACAAACAACCAGAGGATCAAGGCTTCCATCCCAAGCATCAAGTACTGC ......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSPH1CAT.1 CAT X70848 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAAGGAGCTGCTGGCTGGACGGCGGCATGTCCGACAGCGAGAAGCTCAACCTGGACTCGATCATCGGGCGCCTGCTGGAAGTGCAGGGCTCGCGGCCTGGCAAGAATGTACAGCTGACAGAGAACGAGATCCGCGGTCTGTGCCTGAAATCCCGGGAGATTTTTCTGAGCCAGCCC ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 HSPHAPII.1 CAT X75091 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGACCGCGGAGCAGCACCATGTCGGCGCCGGCGGCCAAAGTCAGTAAAAAGGAGCTCAACTCCAACCACGACGGGGCCGACGAGACCTCAGAAAAAGAACAGCAAGAAGCGATTGAACACATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAAGCCAGT ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 261 HSPHBIPRM.1 CAT Z37986 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGAGCCAGCGTGGGAGGCCGCTGCCGTCGCGCGCCTTGGTTTTTCTGTTCCTTTTTTTTTTTTTTTTTTAACTTCCTGCCTATCACACGCAGCCATCAGCCCACAAAGACATGACTACCAACGCGGGCCCCTTGCACCCATACTGGCCTCAGCACCTAAGACTGGACAACTTTGTACCTAATGACCGCCCCACCTGGCATATACTGGCTGGCCTCTTCTCTGTCACAGGGGTCTTAGTCGTGACCACATGGCTGTTGTCA ...............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSPHI3K.1 CAT Z29090 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGATCAGAACAATGCCTCCAAGACCATCATCAGGTGAACTGTGGGGCATCCACTTGATGCCCCCAAGAATCCTAGTGGAATGTTTACTACCAAATGGAATGATAGTGACTTTAGAATGCCTCCGTGAGGCTACATTAGTAACTATAAAGCATGAACTATTT ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPHKA1.1 CAT X73874 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGGCCTGAGCGGTGGGAGGGCTCTGCGGGGCCTGGTGTTCAGGCGTCCCACCACGAGGGTGGAGCAGCGTTGGATACTTGTTCCTTAGGGACCGAAGCTCCGGTGGCACCCGGGCTATTTCTCAGAGGACAATTAGTAACGTGTCGCCATGAGGAGCCGGAGTAACTCCGGGGTCCGGCTGGACGGCTACGCTCGACTGGTGCAACAGACCATCCTGTGCCATCAGAATCCAGTGACTGGCTTGCTTCCAGCCAGCTATGATCAGAAAGATGCTTGGGTCCGAGATAATGTGTACAGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 269 HSPHKG1.1 CAT X80590 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCCTTCAGCCCTCTGTGGTCCCCTCTCCCCGGGGGGCTTTGGGATTCTTGTCAAGCTCCTTCAAGAGCCTGCAAGCACTTAACCAGCCACCCAGAGTTCCCTCACTGAAGATCTGAGCATGACCCGGGACGAGGCACTGCCGGACTCTCATTCTGCACAGGACTTCTATGAGAATTATGAGCCCAAAGAGATCCTGGGCAGGGGCGTTAGCAGTGTGGTCAGGCGATGCATCCACAAGCCCACGAGCCAGGAGTACGCCGTGAAGGTC .......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 270 HSPISSLRE.1 CAT X78342 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGAGCCACCGCCCCCAGCCTGGCCTGGCATTTCTTTGAGTTCAGGAAGTGTGACAAGGATTTGGACACCCAGAAATAAGCGTGTCGAGAAGAGCACAAGCAGAGGATCCAGCGCTCGGCATGGCGGAGCCAGATCTGGAGTGCGAGCAGATCCGTCTGAAGTGTATTCGTAAGGAGGGCTTCTTCACGGTGCCTCCGGAACACAGGCTGGGACGATGCCGGAGTGTGAAGGAGTTTGAGAAGCTGAACCGCATTGGAGAGGGTACCTAC ........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 HSPITR1.1 CAT Z46973 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTGTACCTAAGTTCCCGCTGTAGGTGGTACCTTTGCAGACGGTGCGATGGGGGAAGCAGAGAAGTTTCACTACATCTATAGTTGTGACCTGGATATCAACGTCCAGCTTAAGATAGGAAGCTTGGAAGGGAAGAGAGAACAAAAGAGTTATAACGCTGTCCTGGAAGACCCAATGTTGAAGTTCTCAGGACTATAT ...............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229 HSPKFB.1 CAT X52638 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGGACAGGTAGTAAGATAGGAAGTGAGGCCAGGTACCTTGTGGGCAGTGATGTCATTCGGTGCGACTCCTAAGATGTCTCCAGAGATGGGAGAGCTCACCCAAACCAGGTTGCAGAAGATCTGGATTCCACACAGCAGCGGCAGCAGCAGGCTGCAACGGAGAAGGGGCTCATCCATACCCCAGTTTACCAATTCCCCCACAATGGTGATCATGGTGGGTTTA ...............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPLC.1 CAT X14034 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCGGCGCTGAGTGACCCGAGTCGGGACGCGGGCTGCGCGCGCGGGACCCCGGAGCCCAAACCCGGGGCAGGCGGGCAGCTGTGCCCGGGCGGCACGGCCAGCTTCCTGATTTCTCCCGATTCCTTCCTTCTCCCTGGAGCGGCCGACAATGTCCACCACGGTCAATGTAGATTCCCTTGCGGAATATGAGAAGAGCCAGATCAAGAGAGCCCTGGAGCTGGGGACGGTGATGACTGTGTTCAGCTTCCGCAAGTCCACCCCCGAGCGGAGAACCGTCCAGGTGATCATGGAGACGCGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSPLE.1 CAT X07743 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCCCAGCTGCTGAGAGGAGTTGCCTGAGAGTGACCTTTGCATCTGCCTGTCCAGCCAGCATGGAACCAAAGCGGATCAGAGAGGGCTACCTTGTGAAGAAGGGGAGCGTGTTCAATACGTGGAAACCCATGTGGGTTGTATTGTTAGAAGATGGAATTGAATTCTATAAGAAGAAAAGTGACAACAGCCCCAAAGGAATGATCCCGCTG ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSPLZFA.1 CAT Z19002 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGGAAGCCCACCCAGCCCCGCCACGCAGAGCCCAGAAGGAAAGAAAGCCTCATGCCTGAGCCGAGGGGAGCACCATGGATCTGACAAAAATGGGCATGATCCAGCTGCAGAACCCTAGCCACCCCACGGGGCTACTGTGCAAGGCCAACCAGATGCGGCTGGCCGGGACTTTGTGCGATGTGGTCATCATGGTGGACAGCCAGGAGTTCCACGCCCACCGGACG ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249 HSPP15.1 CAT X07315 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAAGGGACAGTCGGCCGCAGACCGCGCTGGGTTGCCGCTGCCGCTGCCGCCATCGTGCCAGCCCCTCGGGTCTCCGTGAGGCCGGGTGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAATGATAGAACCCAACTAGGCGCAATTTACATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCT ...................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 196 HSPPHBETA.1 CAT X81333 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAACCCTGAATGTCATAGTTAGCTACTTTCAACTGGAAGCTACAACATGGATTTATGGAATCTGTCTTGGTTTCTGTTCTTGGATGCTCTTCTCGTGATTTCTGGCTTGGCAACTCCAGAAAACTTTGATGTAGATGGCGGAATGGACCAGGACATATTTGATATCAATGAAGGTTTGGGACTGGATCTTTTTGAG ..............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 211 HSPR22.1 CAT X94912 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTTTCCTTATCCCAGTTGATTGTGCAGAATACACTGCCTATCGCTTGTCTTCTATTCACCATGGCTTCTTCTGATATCCAGGTGAAAGAACTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTGATTCTCAGCCCTCGGTCAAAAGAATCTGTTCCAGAATTCCCCCTTTCCCCTCCAAAGAAGAAGGATCTTTCCCTGGAGGAAATT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247 HSPR264SC.1 CAT X75755 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACGCGGAAGGCAACTGCCTGAGAGGCGCGGCGTCGCACCGCCCAGAGCTGAGGAAGCCGGCGCCAGTTCGCGGGGCTCCGGGCCGCCACTCAGAGCTATGAGCTACGGCCGCCCCCCTCCCGATGTGGAGGGTATGACCTCCCTCAAGGTGGACAACCTGACCTACCGCACCTCGCCCGACACGCTGAGGCGCGTCTTCGAGAAGTACGGGCGCGTCGGCGACGTGTACATCCCGCGGGATCGCTAC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPREC.1 CAT X51730 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCGACCCAGGAGGTGGAGATCCTCCGGTCCAGCCACATTCAACACCCACTTTCTCCTCCCTCTGCCCCTATATTCCCGAAACCCCCTCCTCCTTCCCTTTTCCCTCCTCCCTGGAGACGGGGGAGGAGAAAAGGGGAGTCCAGTCGTCATGACTGAGCTGAAGGCAAAGGGTCCCCGGGCTCCCCACGTGGCGGGCGGCCCGCCCTCCCCCGAGGTCGGATCCCCACTGCTGTGTCGCCCAGCCGCAGGTCCGTTCCCGGGGAGCCAGACCTCGGACACCTTGCCTGAAGTTTCGGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPROKINX.1 CAT Z35102 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTTTCTCTGGCTTTTGTTACATATTACCTGTTTGTCCTCCAGAAAACTTGCACCAATTTACATTCCTACCAATAGGGTAGGAGAGTGCACAATGGGTGGATTCTAACTCCAAATCTAACACCTCTTCTTTTCTTTGTTTCTAGCAGCCATGGCAATGACAGGCTCAACACCTTGCTCATCCATGAGTAACCACACAAAGGAAAGGGTGACAATGACCAAAGTGACACTGGAGAATTTTTATAGCAACCTTATCGCTCAACATGAAGAACGAGAAATGAGACAAAAGAAGTTAGAAAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPROSCHY.1 CAT X71874 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACGGGCCTTTGAGGAAGGGTAAAGGCGAAAGCGAAAGCAGGAAGTACAGACGTGAAGCCTAGCAGAGGACTTTTTAGCTGCTCACTGGCCCCGCTTGTCTGGCCGACTCATCCGCCCGCGACCCCTAATCCCCTCTGCCTGCCCCAAGATGCTGAAGCCAGCCCTGGAGCCCCGAGGGGGCTTCTCCTTCGAGAACTGCCAAAGAAATGCATCATTGGAACGCGTCCTCCCGGGGCTCAAGGTCCCTCACGCACGCAAGACCGGGACCACCATCGCGGGCCTGGTGTTCCAAGACGGG ..................................................................................................................MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247 HSPROTC.1 CAT X02750 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCAGGGGGGGGGGGGGGGGGGGGCTGTCATGGCGGCAGGACGGCGAACTTGCAGTATCTCCACGACCCGCCCCTACAGGTGCCAGTGCCTCCAGAATGTGGCAGCTCACAAGCCTCCTGCTGTTCGTGGCCACCTGGGGAATTTCCGGCACACCAGCTCCTCTTGACTCAGTGTTCTCCAGCAGCGAGCGTGCCCACCAGGTGCTGCGGATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTC .................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPSAG.1 CAT X14810 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCTCCAGCAGCATGGGGAGGGCCTTGGTCAGCCTCTGGGTGCCAGCAGGGCAGGGGCGGAGTCCTGGGGAATGAAGGTTTTATAGGGCTCCTGGGGGAGGCTCCCCAGCCCCAAGCTTACCACCTGCACCCGGAGAGCTGTGTCACCATGTGGGTCCCGGTTGTCTTCCTCACCCTGTCCGTGACGTGGATTGGCGCTGCGCCCCTCATCCTGTCTCGGATTGTGGGAGGCTGGGAGTGCGAGAAGCATTCCCAACCCTGGCAGGTGCTTGTGGCCTCTCGTGGCAGGGCAGTCTGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPSK1EX.1 CAT X71875 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGAGGGAGGGCTGAGGAGGATGGCTGATTTCCTTAGAGTTGGCCTGGCTGTGCTGACTTGTTCTCTCTTTGTGTGTAGGTGTAGACGGGGCACTGCCTTCAGAGCAGGTCCTGCCAGCCTCGCTGGAGAGGATGCCCTCGTGTCCGTGATGGGCTGTGGGACAAGCAAGGTCCTTCCCGAGCCACCCAAGGATGTCCAGCTGGATCTGGTCAAGAAGGTGGAGCCCTTCAGTCCCACTAAGAGTGACGTGTACAAGCACTTCATCACAGAGGTGGACAGTGTTGGCCCTGTCAAAGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSPTB1.1 CAT X62006 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTCCGGCGGCTCCACTCCGTCCCCCGCGGTCTGCTCTGTGTGCCATGGACGGCATCGTCCCAGATATAGCCGTTGGTACAAAGCGGGGATCTGACGAGCTTTTCTCTACTTGTGTCACTAACGGACCGTTTATCATGAGCAGCAACTCGGCTTCTGCAGCAAACGGAAATGACAGCAAGAAGTTCAAAGGTGAC .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 279 HSPTP1D.1 CAT X70766 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCACGAGCGGCTGGCTCTGCCCGCGTCCGGTCCCGAGCGGGCCTCCCTCGGGCCAGCCCGATGTGACCGAGCCCAGCGGAGCCTGAGCAAGGAGCGGGTCCGTCGCGGAGCCGGAGGGCGGGAGGAACATGACATCGCGGAGATGGTTTCACCCAAATATCACTGGTGTGGAGGCAGAAAACCTACTGTTGACAAGAGGAGTTGATGGCAGTTTTTTGGCAAGGCCTAGTAAAAGTAACCCTGGAGACTTCACACTTTCCGTTAGAAGAAATGGAGCT .................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSPTPAA.1 CAT X73478 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACTCTCGGTTTTCGGTTCTAGCCGGCCGGCGCTCACTTGTCTTCAGGAAGCTCGGAGCCTTTGGTGGAGCCGGGGAGAGGAAGGGTGGGTGCAAGAGTGAAAGGCGAGAGGGGACTGCAAGCATCCGGGTCGCTGCTGGCCGGAGCAGATGGCTGAGGGCGAGCGGCAGCCGCCGCCAGATTCTTCAGAGGAGGCCCCTCCAGCCACTCAGAACTTCATCATTCCAAAAAAGGAGATCCACACAGTTCCAGACATGGGCAAATGGAAGCGTTCTCAGGCATACGCTGACTACATCGGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSPTPB.1 CAT X54131 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTCCTCTGGATCTTAACTACTGAGCGCAATGCTGAGCCATGGAGCCGGGTTGGCCTTGTGGATCACACTGAGCCTGCTGCAGACTGGACTGGCGGAGCCAGAGAGATGTAACTTCACCCTGGCGGAGTCCAAGGCCTCCAGCCATTCTGTGTCTATCCAGTGGAGAATTTTGGGCTCA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 270 HSPTPU2GN.1 CAT Z48541 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTCGCCAGGAGCAACCTCGGCGCCCAGGGTCTGAGGCTGCAGCCCCAGTTCGACATTGTGAGCCGCCGCCGGGGGAGTCCCTAGCGCAACCGTGCCCCCAAGTCCCCGTCCGCGCAGCGATGGGGCACCTGCCCACGGGGATACACGGCGCCCGCCGCCTCCTGCCTCTGCTCTGGCTCTTTGTGCTGTTCAAGAATGCTACAGCTTTCCATGTAACTGTCCAAGATGATAATAACATCGTTGTCTCATTAGAAGCTTCAGACGTCATC ........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 217 HSPTX3R.1 CAT X63613 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCAAACTCAGCTCACTTGAGAGTCTCCTCCCGCCAGCTGTGGAAAGAACTTTGCGTCTCTCCAGCAATGCATCTCCTTGCGATTCTGTTTTGTGCTCTCTGGTCTGCAGTGTTGGCCGAGAACTCGGATGATTATGATCTCATGTATGTGAATTTGGACAACGAAATAGACAATGGACTCCATCCCACTGAGGACCCCACGCCGTGCGACTGCGGT ...................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSPYT.1 CAT X70500 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGCACGTAAAAAGGATGCAGAGACATGTGCATGCGCCAAAATTTACAGGTTTTAGCATCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAATTTATTCCATATTAAAGCAGATAGGAAGTGGAGGTTCAAGCAAGGTATTTCAGGTGTTAAATGAAAAGAAACAGATA ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSPZHEP.1 CAT X54380 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGACACAACCCTGAGATTTATCCCTCACAATGCGGAAAGACAGACTTCTTCATTTATGTCTTGTGCTACTTCTTATCCTGCTTTCTGCCAGTGACTCAAACTCTACAGAACCGCAGTATATGGTGCTGGTCCCCTCCCTGCTCCACACTGAGGCCCCTAAGAAGGGCTGTGTCCTTCTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSQAE1.1 CAT X56976 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGCGGCGGCGCGACCCGGGGAACCGGCATTGATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCCCAGTCCGTGTTGTCCGAAGTGCCCTCGGTGCCAACCAACGGAATGGCCAAGAACGGCAGTGAAGCAGACATA ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRAB2.1 CAT X12953 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCCCTCACTCCCGGCGGCTGACAGCAGCAGCGGCGGCGGCGGGCGGCGCCTGGCGTTTCGAGGCTGAGCGGCACCGGGGTTGGGGCGCGGAGGAGGAGCAGCAGCGGGAGGAGGAGCCGTGTGCCCTGGCACTGAGCGGCCGCGGCCATGGCGTACGCCTATCTCTTCAAGTACATCATAATCGGCGACACAGGTGTTGGTAAATCATGCTTATTGCTACAGTTTACAGACAAGAGGTTTCAGCCAGTGCATGACCTTACTATTGGTGTAGAGTTCGGTGCTCGAATGATAACTATT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 269 HSRAP30.1 CAT X16901 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGAACGCCGCTCTTCGCCTCTCAGCGGCGGCTTGTCCTTTGTTCCGGACGCCCGCTCCTCAGCCCTGCGTCCTGGGGTCGCTGCTGCATCCCGCACGCCTCCACCGGCTGCAGACCCATGGCCGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAACACAGGAGTGTGGCTAGTCAAGGTTCCTAAATATTTGTCACAGCAATGGGCTAAAGCCTCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAAGACTCAAGGA .......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HSRAP74R.1 CAT X64002 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCTCTGGCGCTGGGAAAAGGTAACCCGGGTCGGACCAGATCGGAACCACTGACCATTGCCCATGGCGGCCCTAGGCCCTAGCAGCCAGAATGTCACTGAATACGTCGTTCGAGTTCCTAAGAATACAACCAAAAAATATAACATCATGGCTTTTAATGCAGCCGACAAAGTCAACTTTGCTACGTGGAATCAGGCTCGGCTGGAGCGGGAC ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRAR.1 CAT X06538 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAGGTGGCTGAGGGGGCCATGTCCTGTGATGCTCGCAGCGGGGGAAGCAACCCGTTCGGGGTGCCAGCGAGCACAGCGTCTGCCCTAACCCGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCACCATTGAGACCCAGAGCAGCAGTTCTGAAGAGATAGTGCCCAGCCCTCCCTCGCCACCCCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRARE.1 CAT X07282 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTCATGATTCGGGGCTGGGAAAAAGACCAACAGCCTACGTGCCAAAAAAGGGGCAGAGTTTGATGGAGCCGGGTGGACTTTTCTATGCCATTTGCCTCCACACCTAGAGGATAAGCACTTTTGCAGACATTCAGTGCAAGGGAGATCATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGGATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACCCAAACCGAATGGCAGCATCGGCACACT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSRBPL8.1 CAT Z28407 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTCTCTCTCTCTCTCTCTCTCTGGTGAACAGGACCCGTCGCCATGGGCCGTGTGATCCGTGGACAGAGGAAGGGCGCCGGGTCTGTGTTCCGCGCGCACGTGAAGCACCGTAAAGGCGCTGCGCGCCTGCGCGCCGTGGATTTCGCTGAGCGGCACGGCTACATCAAGGGCATCGTCAAGGACATCATCCAC ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240 HSRBQ1.1 CAT X85133 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCACGAGGAAACCTCTAGGTCCACCACCTCCATCTTACACGTGTTTCCGTTGTGGTAAACCTGGACATTATATTAAGAATTGCCCAACAAATGGGGATAAAAACTTTGAATCTGGTCCTAGGATTAAAAAGAGCACTGGAATTCCCAGAAGTTTTCATGATGGAAGTGAAAGATCCTAATATGAAAGGTGCAATGCTTACCAACACTGGAAAATATGCAATACCAACTATAGATGCAGAA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 264 HSRBQ3.1 CAT X85134 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCACGAGGCGGCAGTCTCTTCGCGGCGTCCACCACTTAGACGCAAGTTGCTGAAGCCGGCCGGGGAGAAGGTGTTGTTGCCGGAGCTGAGACCGGGCGGCCACAGTCCGCAGGGATGAACCTCGAGTTGCTGGAGTCCTTTGGGCAGAACTATCCAGAGGAAGCTGATGGAACTTTGGATTGTATCAGCATGGCTTTGACTTGCACCTTTAACAGGTGGGGCACACTGCTTGCAGTTGGCTGTAATGATGGCCGAATTGTCATC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRCC1B.1 CAT X12654 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GATGGCCGCCAGGGGCCGCCGGGCTCTTTGTTTTCCTTTCTCACCCGGGTCGGGGCCAGAGGCCTGCAGAGCGCATGCTCTGGGGCAGTTCGCGGCCCGGCGGGGAGCGCCGGAGTTCCTTGTGGCCGACGTGCACCAAGGACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGCAGATGCCATCCCCAAAAGCAAGAAGGTGAAGGTCTCACACAGGTCCCACAGCACAGAACCCGGCTTGGTGCTGACACTAGGCCAGGGCGACGTGGGCCAGCTGGGGCTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRDC1MR.1 CAT X64624 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTTGGTTTGTGTCGCCTGCAGCTGCACCGAGCAACCTCTTCGCCAGCCTGGACGAGACGCTGCTGGCCGGGCCGAGGCCTGGCGGCCGTGGACATCGCCGTGTCCCAGGGCAAGAGCATCCTTCAAGCCGGACGCCACGTACCACACGATGAACAGCGTGCCGTGTCACACTTCCACGGTGCCTCTGGCGCACCACCACCACCACCACCACCACCACCAGGCGCTCGAACCCGGCGATCTGCTGGACCACATCTCCTCGCCGTCGCTCGCGCTCATGGCCGGCGCGGGCGCGCGGCGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRERBI.1 CAT X77664 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAAGGTCATCAGTTGAACCATCTTGACTTTGGCCCAGAACACAGCTCAGCCTCAACTCCTGCAGTGCATTTGCCTCCCTCACTTTGGTTTAAGACCTGGAGTGATGTGTTCCTGCTCCAGAGCACCTTTCTTTCTGTGAGGCCCGAAACATGACCACCAGCGGCCACGCATGTCCGGTCCCAGCAGTGAACGGACACATGACTCACTATCCAGCCACACCCTACCCGTTACTCTTTCCACCTGTCATCGGAGGACTTTCCCTGCCTCCCCTCCATGGCCTTCATGGACATCCGCCTCCG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRETPON.1 CAT X12949 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTCCTGGAGGGTGAGGGTCTGCCCTTCCGCTGCGCCCCGGACAGCCTGGAGGTGAGCACGCGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTACGAGCTGGTGGCCGTGTGCACCGTGCACGCCGGCGCGCGCGAGGAGGTGGTGATGGTGCCCTTCCCGGTGACCGTGTACGACGAGGACGACTCGGCGCCCACCTTCCCCGCGGGCGTCGACACCGCCAGCGCCGTGGTGGAGTTCAAGCGGAAGGAGGACACCGTGGTGGCCACGCTGCGTGTCTTCGATGCAGACGTGGTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 HSRETSA.2 CAT X12453 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGTTGCCAGGGACAGATAACATGGCAGCCAGCGGGAAGACCAGCAAGTCCGAACCGAACCATGTTATCTTCAAGAAGATCTCCCGGGACAAATCGGTGACCATCTACCTGGGGAACAGAGACTACATAGACCATGTCAGCCAAGTCCAGCCTGTGGATGGTGTCGTGTTG MMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229 HSRETTT.1 CAT X15786 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTCACCTCCGGACGTGAGAATTACAGGCTTGGATCTCAAACCGCCGCGGTTTGCCAATAGGATTATCCTGCTGCCATCATGTCTTGGTTTGTTGATCTTGCTGGAAAGGCAGAAGATCTTTTAAACCGAGTTGATCAAGGGGCTGCAACAGCTCTCAGTAGGAAAGACAATGCCAGCAACATATATAGCAAAAATACTGACTATACTGAACTTCACCAGCAAAATACA ...............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSREVERB2.1 CAT X72632 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACCAAGCTGAATGGCATGGTGTTACTGTGTAAAGTGTGTGGGGACGTTGCCTCGGGCTTCCACTACGGTGTGCTCGCCTGCGAGGGCTGCAAGGGCTTTTTCCGTCGGAGCATCCAGCAGAACATCCAGTACAAAAGGTGTCTGAAGAATGAGAATTGCTCCATCGTCCGCATCAATCGCAACCGCTGCCAGCAATGTCGCTTCAAGAAGTGTCTCTCTGTGGGCATGTCTCGAGACGCTGTGCGTTTTGGGCGCATCCCCAAACGAGAGAAGCAGCGGATGCTTGCTGAGATGCAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226 HSRFG1.1 CAT X77548 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAATCGCGACCCTCAGTCCACCCAAGGTCTCCTCGGATCGCCTGGAGAGGCACTCGGACCTGGAGCAGTGAGGAGAATGAATACCTTCCAAGACCAGAGTGGCAGCTCCAGTAATAGAGAACCCCTTTTGAGGTGTAGTGATGCACGGAGGGACTTGGAGCTTGCTATTGGTGGAGTTCTCCGGGCTGAACAGCAAATTAAAGATAACTTGCGAGAGGTCAAAGCT ............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRFX2.1 CAT X76091 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAGACCTGAGCATGCAGAATTCCGAGGGTGGAGCGGATTCGCCAGCGTCCGTGGCTCTGCGTCCCTCGGCGGCAGCCCCGCCTGTGCCAGCCTCCCCGCAGAGGGTGTTGGTCCAGGCAGCCAGCTCCAATCCCAAAGGGTCCCAGATGCAGCCGATCTCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSRH30A.1 CAT X54534 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGCCTGGTGCTGGTGGAACCCCTGCACAGAGACGGACACAGGATGAGCTCTAAGTACCCGCGGTCTGTCCGGCGCTGCCTGCCCCTCTGGGCCCTAACACTGGAAGCAGCTCTCATTCTCCTCTTCTATTTTTTTACCCACTATGACGCTTCCTTAGAGGATCAAAAGGGGCTCGTGGCATCCTATCAAGTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248 HSRHOGAPX.1 CAT Z23024 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTTGCCGAGCCTTGACAGGCGTGGCAGAGGGAGCAGTGCCCGAGCGCGGTTTCTCTTAAGGTTCTGCAGGGCAAGGCTGTCTGGGACAGGCTTGGCCATGGATCCGCTCTCAGAGCTGCAGGATGATCTGACCTTGGATGACACCAGCGAGGCTCTGAACCAGCTGAAGCTGGCCTCCATCGATGAGAAGAACTGGCCCTCGGATGAAATGCCTGACTTCCCCAAGTCAGATGACTCCAAAAGCAGC ..................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 287 HSRIBIR.1 CAT Y00281 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTAGCTAGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGCCGGCTGAGATGGCGCCATCACACTCCAGCCTGCTCTTCCCGGTCATGGAGGCGCCAGCCGCCGGCTTGTTTCTGCTCCTGTTGCTTGGGACTTGGGCCCCGGCGCCGGGCAGCGCCTCCTCCGAGGCACCGCCGCTGATCAATGAGGACGTGAAGCGCACAGTGGACCTAAGCAGCCACCTGGCTAAGGTGACG .........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSRING1.1 CAT Z14000 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTGCTGTTTCTAAAACCCCTTTCCCTCTAACCCACACCACCTTTCTACTCACTGATGCCTTCAGGAAGCCATAATGGATGGCACAGAGATTGCTGTTTCCCCTCGGTCACTGCATTCAGAACTCATGTGCCCTATCTGCCTGGACATGCTGAAGAATACGATGACCACCAAGGAGTGCCTCCACAGATTCTGCTCTGACTGCATTGTCACAGCCCTACGGAGC ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSRING4.1 CAT X57522 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGCCGCTTTCGATTTCGCTTTCCCCTAAATGGCTGAGCTTCTCGCCAGCGCAGGATCAGCCTGTTCCTGGGACTTTCCGAGAGCCCCGCCCTCGTTCCCTCCCCCAGCCGCCAGTAGGGGAGGACTCGGCGGTACCCGGAGCTTCAGGCCCCACCGGGGCGCGGAGAGTCCCAGACCC ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 280 HSRKAPB.1 CAT X80878 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGGGCTGTTTAGCTGTAATTAGGGTGCAAGGATAAGGTGTAAGAACTGGCTGGAGGTTGAATGTTTTCCTGGAGGAGTGTTAGCATCAACTAGATCCCTGGAATTTCTGCCTTTCTGTCTCAAGATGCATGTCTTTGTCCAGAGTACCTGTGGAGAAGAAACAATGGATTCCTTAGACCATATGCTGACAGATCCTCTGGAACTTGGTCCGTGTGGAGATGGCCATGGCACGCGCATCATGGAGGATTGCCTCCTGGGAGGCACCAGAGTTAGT ..................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRNABS69.1 CAT X86098 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGATTATACGGAACCAGAAGCAGATTGCCAACATTGACCGTATTACAAAATGTGAAACAACTACATTATTCTTGAACCTATGGTGATTTTTACATCATTACACAGATATGTCATTTTCATTAGTTGTATCATTGTTATAAACTGGTATATGTCTCGAGTCCACGGTATGCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACAGTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 205 HSRNAESM1.1 CAT X89426 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCCCACCAGCAAAGACCACGACTGGAGAGCCGAGCCGGAGGCAGCTGGGAAACATGAAGAGCGTCTTGCTGCTGACCACGCTCCTCGTGCCTGCACACCTGGTGGCCGCCTGGAGCAATAATTATGCGGTGGACTGCCCTCAACACTGTGACAGCAGTGAGTGCAAAAGCAGCCCGCGCTGCAAGAGGACAGTGCTCGACGAC .......................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRNAGSSP.1 CAT X86400 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAGAATTCCGGGCCCGGCTGTATTTGTACTTGAGCTTGGAGAGGCTGGTGGTGACAGAGGAGGGAGACAGGCAGGCAGGTGAGGGAAGCAGCGGTCTCTGACGCCGGCTTTATTATAAGCATGAGGTGGCACGAGGCAGGAGTTGGCGATGCCACCTGGGGGTCACATTGAGTCTGGAGCTTCCTTCAGCCCAAGCGCTGGCAGTGACGGGGACAAAGGTCTAAAGCCCAGGGAAGAAGGGGAGGCGCCAGAGGCAGGGCCATGCTTGGCTTCCCAGCTGGCCCCAGTGCAGTGGGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229 HSRNAIDH.1 CAT Z68907 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAAACTTCGCACCCCGTCGAACTCTCGCGAGAGCGGTATCTGCGTGTCGGGACGTGCGGAGGCTCTCACTTTCCGTCATGGCGCTGAAGGTAGCGACCGTCGCCGGCAGCGCCGCGAAGGCGGTGCTCGGGCCAGCCCTTCTCTGCCGTCCCTGGGAGGTTCTAGGCGCCCACGAGGTCCCCTCGAGGAACATCTTTTCAGAACAAACAATTCCTCCGTCCGCTAAG ...............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 HSRNAIFMH.1 CAT X76562 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCAAATCGCGGTACCTGTGGATGAGAGACATAGACGAGAGAGTGAGATGGCCTGGTTTGCCCTCTACCTCCTGAGCCTTCTCTGGGCTACAGCTGGGACTAGTACCCAGACCCAGAGTTCATGCTCCGTTCCCTCAGCACAGGAGCCCTTGGTCAATGGAATACAAGTACTCATGGAGAACTCGGTGACTTCATCA ...............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRNALA4P.1 CAT X91171 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCGTACTCTGCTGGTTGCGCAGCCACCTCGGGATACTGCACACGGAGAGGAGGGAAAATAAGCGAGGCACCGCCGCACCACGCGGGAGACCTACGGAGACCCACAGCGCCCGAGCCCTGGAAGAGCACTACTGGATGTCAGCGGAGAAATGGCTTTGAGCTCAGCCTGGCGCTCGGTTCTGCCTCTGTGGCTCCTCTGGAGCGCTGCCTGCTCCCGCGCCGCGTCCGGGGACGACAACGCTTTTCCTTTTGACATTGAAGGGAGCTCAGCGGTTGGCAGGCAAGACCCGCCTGAGACG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRNANEB.1 CAT X83957 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTTTGCTGCTGAGGAAATTTATTTGGTAGATTGAAGGTTTGAACGAGAGCTACAGAAACGAAAGAAAAAGTCTGTATAAGCCAATGGTGTTCGGGAAGAAAATAACCCCATTGCCTTGAGTTTGTAGGTGCCACTACTACTCTGAAAAATGGCAGATGACGAAGACTATGAGGAGGTGGTGGAGTACTACACAGAAGAAGTGGTTTACGAAGAGGTGCCGGGAGAGACAATAACAAAAATTTATGAGACTACGACAACAAGGACATCTGACTATGAGCAATCAGAAACTTCCAAACCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 259 HSRNAP2EF.1 CAT Z47087 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGCCGCTCGACGCTGTAGTGGCTTCGTCTTCGGTTTTTCTCTTCCTTCGCTAACGCCTCCCGGCTCTCGTCAGCCTCCCGCCGGCCGTCTCCTTAACACCGAACACCATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTATTAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCTCTACCAAATGTG .............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 181 HSRNARAGA.1 CAT X90529 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTGCGAGTCCCCGGCAGCCCCCGGCGGGTGATGCCAAATACAGCCATGAAGAAAAAGGTGCTGCTGATGGGGAAGAGCGGGTCGGGGAAGACCAGCATGAGGTCGATAATCTTCGCCAATTACATTGCTCGCGACACCCGGCGCCTGGGGGCCACCATTGACGTGGAACACTCCCACGTC ...............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 265 HSRNASMF.1 CAT X85372 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTGGCCATTTCTCTTGAAACTGCGGCTCGGGACCTGCGGTACCTGCTGTAGTCACGAGGGACGGGCGGCGGCTGGTCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTTTACATGAGTTTACCCCTCAATCCCAAACCTTTCCTCAATGGACTAACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGAATGGAGTACAAGGGCTATCTGGTATCTGTAGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATAC ...................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 HSRNATTFI.1 CAT X83973 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTGGGGGTTGGGAGAAAGGTGGCGGTGCTTTCGGAGGGAATAAAATGGAAGGAGAATCAAGCAGATTTGAAATCCACACTCCAGTTTCTGACAAGAAAAAGAAAAAGTGTTCTATACATAAGGAAAGACCTCAGAAACATTCCCACGAAATTTTCAGAGACTCCTCCCTGGTGAATGAACAGTCTCAAATAACT ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRNAURPH.1 CAT X90858 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTCCCAATTCAGGGCTTGGTGAGGTGACTCGCGGTCGCGGGTGACTCGCCGGCAGGACACTGCCTGGAACGCCTGGAGCGCCTCCCACTGCAGACGTCTGTCCGCCTCCAGCCGCTCTCCTCTGACGGGTCCTGCCTCAGTTGGCGGAATGGCGGCCACGGGAGCCAATGCAGAGAAAGCTGAAAGTCACAAGTCTGGAGCCCGGCACTGTGGTCATAACAGAGCAGGCAGTGGATACCTGCTTCAAGGCAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGGAAAACGGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSRNPE1.1 CAT X78137 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACTCCCCCGAACGCCGCCCGCCGCTCGCCATGGATGCCGGTGTGACTGAAAGTGGACTAAATGTGACTCTCACCATTCGGCTTCTTATGCACGGAAAGGAAGTAGGAAGCATCATTGGGAAGAAAGGGGAGTCGGTTAAGAGGATCCGCGAGGAGAGTGGCGCGCGGATCAACATCTCG ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 HSRP19.1 CAT X12791 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGAAACTCAGAGCCGGGTTCCTCCCGGGTTTCTGCCGGGTTTCTCCCTGCGGCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCTGCCGCGCGGTCCCCGGCCGACCAGGACAGGTTTATTTGTATCTATCCTGCTTATTTAAATAATAAGAAGACCATCGCAGAGGGAAGGCGAATCCCCATAAGTAAGGCTGTTGAAAATCCTACAGCTACAGAGATTCAA .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSRPII140.1 CAT X63563 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTTTGATTTCAAGAGTTAGGAGCTCGAGAACCGTTTGGCAATATGTACGACGCGGATGAGGATATGCAATATGATGAGGATGATGATGAAATCACCCCGGATTTGTGGCAAGAAGCATGCTGGATTGTAATCAGTTCCTATTTTGACGAGAAAGGCTTGGTTAGACAACAGCTGGATTCTTTTGATGAGTTT ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 HSRPII145.1 CAT Z23102 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGCTGCGCGTCGCCATGGAGCCCGACGGGACTTACGAGCCGGGCTTCGTGGGTATTCGCTTCTGCCAGGAATGTAACAACATGCTGTACCCCAAGGAAGACAAGGAGAACCGCATTCTGCTCTACGCGTGCCGGAACTGTGATTACCAGCAGGAGGCCGACAAC MMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSRPIILS.1 CAT X63564 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCGCCACCTTCCCCTCCTCCGGCTTTTTCCTCCCAACTCGGGGAGGTCCTTCCCGGTGGCCGCCCTGACGAGGTCTGAGCACCTAGGCGGAGGCGGCGCAGGCTTTTTGTAGTGAGGTTTGCGCCTGCGCAGGCGCCTGCCTCCGCCATGCACGGGGGTGGCCCCCCCTCGGGGGACAGCGCATGCCCGCTGCGCACCATCAAGAGAGTCCAGTTCGGAGTCCTGAGTCCGGATGAACTGAAGCGAATGTCTGTGACGGAGGGTGGCATCAAATACCCAGAGACGACTGAGGGAGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 175 HSRPL17.1 CAT X52839 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTTTTCTTTTGGGGGGCGTTCAAGATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTAGGAGCTGTAATCAATTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCCGTGAAGGGGATCAAGGGACGGCTGAAC .........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSRPL32.1 CAT X03342 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAGGAGGTGGCAGCCATCTCCTTCTCGGCATCATGGCCGCCCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAAAGAGAACCAAGAAGTTCATCCGGCACCAGTCAGACCGATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGCATTGACAACAGGGTTCGTAGAAGATTCAAG ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 260 HSRPL38.1 CAT Z26876 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTTTTTTTTTTTTTTTTTTTATGGGGTGTGATAGGTGTGAGTGTCTCTAGGGTGATACGTGGGTGAGAAAGGTCCTGGTCCGCGCCAGAGCCCAGCGCGCCTCGTCGCCATGCCTCGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACAGCCCGACGAAAGGATGCCAAATCTGTCAAGATCAAGAAAAATAAGGACAACGTGAAGTTTAAAGTTCGATGCAGCAGATACCTTTACACCCTGGTCATCACTGACAAA ..............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 HSRPS11.1 CAT X06617 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGGCGGCCGGGAAGATGGCGGACATTCAGACTGAGCGTGCCTACCAAAAGCAGCCGACCATCTTTCAAAACAAGAAGAGGGTCCTGCTGGGAGAAACTGGCAAGGAGAAGCTCCCGCGGTACTACAAGAACATCGGTCTGGGCTTCAAGACACCCAAGGAGGCT MMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSRPS12.1 CAT X53505 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTCCCTGCCGCCGCCGAGTCGCGCGGAGGGCAGGCTTGGGTGCGTTCAAGATTCAGCTTCACCCGTAACCCACCGCCATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTTCTGAAGACTGCCCTCATCCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCTTTAGACAAGCGCCAAGCCCATCTTTGT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSRPS8.1 CAT X67247 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAAACCGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTATGAGTTGGGGCGCCCAGCTGCCAACACCAAGATTGGCCCCCGCCGCATCCACACAGTCCGTGTGCGGGGA MMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSCA1.1 CAT X79204 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGTTGGCGGATTGTACCCACGGGGAGATGATTCCTCATGAAGAGCCTGGATCCCCTACAGAAATCAAATGTGACTTTCCGTTTATCAGACTAAAATCAGAGCCATCCAGACAGTGAAACAGTCACCGTGGAGGGGGGACGGCGAAAAATGAAATCCAACCAAGAGCGGAGCAACGAATGCCTGCCTCCCAAGAAGCGCGAGATCCCCGCCACCAGCCGGTCCTCCGAGGAGAAGGCCCCTACCCTGCCCAGCGACAACCACCGGGTGGAGGGCACAGCATGGCTCCCGGGCAACCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 170 HSSECONC.1 CAT X52259 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTTTTGGTCACAGCAGGAGATGCGGGCTCAGGACCGGCAGCTGGCAGGGCAGCCTGTCAGGCTGCGGGCCCGGCTGCACAGACTGAAAGTGGACCAAGTCTGTCACCTGCACCAGGAGCTTCTGGATGAGGCTGAGCTGGAGATGGAGTTAGAGTCTGGGACTGGCTTG ....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 295 HSSERR52.1 CAT X57830 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGGGTGAGCCAGCTCCGGGAGAACAGCATGTACACCAGCCTCAGTGTTACAGAGTGTGGGTACATCAAGGTGAATGGTGAGCAGAAACTATAACCTGTTAGTCCTTCTACACCTCATCTGCTACAAGTTCTGGCTTAGACATGGATATTCTTTGTGAAGAAAATACTTCTTTGAGCTCAACTACGAACTCCCTAATGCAATTAAATGATGACACCAGGCTCTACAGTAATGACTTTAACTCTGGAGAAGCTAACACTTCTGATGCATTTAACTGGACAGTCGACTCTGAA .................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 207 HSSETA.1 CAT X52228 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCCTGGCTGCTTGAATCTGTTCTGCCCCCTCCCCACCCATTTCACCACCACCATGACACCGGGCACCCAGTCTCCTTTCTTCCTGCTGCTGCTCCTCACAGTGCTTACAGTTGTTACAGGTTCTGGTCATGCAAGCTCTACCCCAGGTGGAGAAAAGGAGACTTCGGCTACCCAGAGAAGTTCAGTGCCCAGCTCTACTGAG .........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSF3A60.1 CAT X81789 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCAGTTCAGTGGAGCCCAGCTCTGTGGCTGGCACAGGGACACTGTGGCCAGGTGGGGTGGTTCCTGGGTCTTCCCCAGGAGGAGGCCAGGCAGGAGTTGCTTCCGGCCGTGTTGGTGGTCTGAATTGAGAAGCCGCGACTAAGGGAAGATGGAGACAATACTGGAGCAGCAGCGGCGCTATCATGAGGAGAAGGAACGGCTCATGGACGTCATGGCTAAAGAGATGCTCACCAAGAAGTCCACGCTCCGGGACCAGATCAATTCTGATCACCGCACTCGGGCCATGCAAGATAGGTAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 262 HSSGI.1 CAT Y00064 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGGAGGCACGCTGGTTTTCCGGGGCCGCTCCATCGCGCCTTCCTCCTGCGCCTCGCTTCTCCGGTCCAGCCGCCATCTTCCTTTCCGCACAGGGGCCGCCGAGCGGGGCCATGCAGCCAACGCTGCTTCTCAGCCTCCTGGGAGCCGTGGGGCTGGCGGCTGTCAATTCCATGCCAGTGGATAACAGGAACCACAATGAAGGAATGGTGACTCGCTGCATCATTGAGGTCCTCTCAAATGCCTTGTCGAAGTCCAGCGCT ................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 HSSHC.1 CAT X68148 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGTAACCTAAGCTGGCAGTGGCGTGATCCGGCACCAAATCGGCCCGCGGTGCGTGCGGAGACTCCATGAGGCCCTGGACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTGGAAGGGGGCCAGCTTGGGGGCGAGGAGTGGACCCGCCACGGGAGCTTTGTCAATAAGCCCACGCGGGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCCGGGGTT .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSIAL.1 CAT X52075 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGCCAGGGCCCACTTCCTTTCCCCTTGGGGCCCTGTCCTTCCCAGTCTTGCCCCAGCCTCGGGAGGTGGTGGAGTGACCTGGCCCCAGTGCTGCGTCCTTATCAGCCGAGCCGGTCCCAGCTCTTGCTCCTGCCTGTTTGCCTGGAAATGGCCACGCTTCTCCTTCTCCTTGGGGTGCTGGTGGTAAGCCCAGACGCTCTGGGGAGCACAACAGCAGTGCAGACACCCACCTCCGGAGAGCCTTTGGTCTCTACTAGCGAGCCCCTGAGCTCAAAGATGTACACCACTTCAATAACA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 270 HSSIALOB.1 CAT X12496 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGGTGCCGCTTCCTCTCGCCGCCGAGGGTCAGGAGCCCGGGAGCGCGACCCTCCCCCGGCCCGGCCTGGCCCGGCCTGGCCAGTCCCCGCGGTCTCTGCCCGGGCTGACGCCCAGGAATGTGGTCGACGAGAAGCCCCAACAGCACGGCGTGGCCTCTCAGCCTCGAGCCTGATCCGGGGATGGCCTCTGCCTCCACCACAATGCATACTACCACCATTGCAGAGCCTGATCCAGGGATGTCTGGATGGCCGGATGGCAGAATGGAG ........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSIFNABR.1 CAT X89814 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAGCCGGGCGCGGCTGGGGCCCGAGGCTAGCATCTCTCGGGAGCCGCAAGGCGAGAGCTGCAAAGTTTAATTAGACACTTCAGAATTTTGATCACCTAATGTTGATTTCAGATGTAAAAGTCAAGAGAAGACTCTAAAAATAGCAAAGATGCTTTTGAGCCAGAATGCCTTCATCGTCAGATCACTTAATTTGGTTCTCATGGTGTATATCAGCCTCGTGTTTGGTATTTCATATGATTCGCCTGATTACACAGATGAATCTTGCACTTTCAAGATATCATTGCGAAATTTCCGGTCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 HSSMA4.1 CAT X83300 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGAAAGAGCAGGTTCTGCTTCTTTGGTGTAGTCCTGAAGCTTCCTAAGAAACTTCACATCAGGTGATGGATAGGAGCAACCCTGTAAAACCAGCCTTAGACTATTTTTCAAACAGGCTGGTGAATTACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGG ..................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSMOOTHN.1 CAT Z49989 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGGGCTGCGGGCGCCCCGACCCTACTCAGCACCAGTAGTGGGGCAAGAGCCCAACAGCCCTGGGACCCTGGCTCGGCTGGGCAGTGTCACTCATGTCACCAGCTTCAGCCATGCCCCCCCCAGTAGCCGAGGAGGCTGCAGCATCAAGATGGAACCAGAGCCAGCAGAGCCTCTCGCTGCAGCAGTGGAAGCGGCCAATGGGGCTGAGCGAGCCCGAGTGAACAAAGCACCAGAAGGGCGGCGTCTGAGCGCTGAGGAGCTGATGACTATTGAGGATGAAGGAGTCTTGGACAAGATG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 HSSMYBPC.1 CAT X73114 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCTCGCCTGCCTGTGGGGTTTCTGTCAACTAGTCGTGGAGGGAAGGAGACTCTTTAAAGAATAACATCTTATTGTGGCCATGCCAGAACCCACTAAGAAAGAGGAAAATGAAGTGCCAGCCCCAGCCCCACCCCCGGAAGAACCAAGTAAAGAGAAGGAGGCCGGAACTACACCAGCAAAAGACTGGACCCTTGTCGAAACTCCTCCTGGGGAGGAACAAGCCAAGCAG .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSONA.1 CAT X63753 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGTTGCCTGGGCAGCCTGTGGCAACTGTGGCGCTGGAGATCTCTGTTCAGTCTGTGGTGACAACATCGGAGCTGTCAACGATGACCGTGTCGCAGTCCCTGGAGGTGCCCTCGACGACAGCGCTGGAATCCTATAATACGAACGTTCCATGATGTCATCTTACGAACGCTCTATGATGTCTTATGAGCGGTCTATGATGTCCCCTATGGCTGAACGCTCTATGATGTCAGCCTACGAGCGCTCTATGATGTCAGCCTACGAGCGCTCTATGATGTCCCCTATGGCTGAGCGCTCTATG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSOX3.1 CAT X71135 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACGGGGGCTCGGTAATGATTGGCCAGGGCGCATCACTGCGAACCTGTCAATCACGGGTCCTCCGGGTTGCGAGGGGCGGACCAAGCCCCAACCCCGGGGAATCCGAGCAGGTATATAAGGGGCCCAGCTAGAGCCCAGGCAGACTGTGAATGCGACCTGTTCGAGAGAACTCATCAGGTGCGAGAAGCCCGCGGGTTCCTGCTGATTTGGCGCGGAGCATTTTGATAAGCCTACCCTTCCCGCCGGACTCGCTGGCCCACAGGCCCCCAAGCTCCGCTCCGACGGAGTCCCAGGGCCTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSOX4M.1 CAT X70683 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCTGCGAGGAGTTGAGGGGCCAGTTCGGCCGCCGCGCGCGTCTTCCCGTTCGGCGTGTGCTTGGCCCGGGGAACCGGGAGGGCCCGGCGATCGCGCGGCGGCCGCCGCGAGGGTGTGAGCGCGCGTGGGCGCCCGCCGAGCCGAGGCCATGGTGCAGCAAACCAACAATGCCGAGAACACGGAAGCGCTGCTGGCCGGCGAGAGCTCGGACTCGGGCGCCGGCCTCGAGCTGGGAATCGCCTCCTCCCCCACGCCCGGCTCCACCGCCTCCACGGGCGGCAAGGCCGACGACCCGAGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSPHAR.1 CAT X82554 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTAAAAAGCTTTCTTCACCTTATATATGTTCTTCCACTGTGACTTTTTAGTTGAAGACTAGTAAATTAACTTTTAGTTAGAAGATGCCTACTGCTTTTGTTGTTTATTTTAATCAGCAGAGCACAGAGACACATAAAAACTCTGGGAAATGACTAGGATAAAAATATCAGTATGTATCTGTTTTAGATATTTTGAGTTTTGCTTTTTTTATGCCTTGAATATTTTATTTCAAAAAGTATCTGAAGCAAATTCTCAGACTGAACTACTTCTTAGACCTCACTGTAAGAATATTTTATTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSSPMSYN.1 CAT Z49099 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAGTGAGGCGAGGCCCTGTGCCATGCCTGGGGCAGCAGCACGGCACAGCACGCTCGACTTCATGCTCGGCGCCAAAGCTGATGGTGAGACCATTCTAAAAGGCCTCCAGTCCATTTTCCAGGAGCAGGGGATGGCGGAGTCGGTGCACACCTGGCAGGACCATGGCTATTTA MMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241 HSSQUSYN.1 CAT X69141 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAGACCTACTCCACAGGTCCAGCCGGCCGGTGAGCGCCTGGGGACCGCAGAGGTGAGAGTCGCGCCCGGGAGTCCGCCGCCTGCGCCAGGATGGAGTTCGTGAAATGCCTTGGCCACCCCGAAGAGTTCTACAACCTGGTGCGCTTCCGGATCGGGGGCAAGCGGAAGGTGATGCCCAAGATGGACCAGGACTCGCTCAGCAGCAGCCTGAAAACTTGCTACAAGTATCTCAATCAGACC ...........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSRY.1 CAT X53772 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTTGAGGGGGTGTTGAGGGCGGAGAAATGCAAGTTTCATTACAAAAGTTAACGTAACAAAGAATCTGGTAGAAGTGAGTTTTGGATAGTAAAATAAGTTTCGAACTCTGGCACCTTTCAATTTTGTCGCACTCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAAGCGTATTCAACAGCGATGATTACAGTCCAGCTGTGCAAGAGAATATTCCCGCTCTCCGGAGAAGCTCTTCCTTCCTTTGCACTGAAAGCTGTAACTCTAAGTATCAGTGTGAAACGGGAGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSSSRALP.1 CAT Z12830 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGAAACTGGACACTGGACCGGCAGCGCCATGAGACTCCTCCCCCGCTTGCTGCTGCTTCTCTTACTCGTGTTCCCTGCCACTGTCTTGTTCCGAGGCGGCCCCAGAGGCTCGTTAGCAGTGGCACAAGATCTTACAGAGGATGAAGAAACAGTAGAAGATTCCATAATTGAGGATGAA .............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HSSTHOR.1 CAT X51416 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCTCACAGCAAGTCCAGGCTAGAGGTAGAAACGTGAGAGCCCCACGGCTGGGGAAGATTGCCATGGGATTGGAGATGAGCTCCAAGGACAGCCCTGGCAGTCTGGATGGAAGAGCTTGGGAAGATGCTCAGAAACCACAAAGTGCCTGGTGCGGTGGGAGGAAAACCAGAGTGTATGCTACAAGCAGCCGGCGGGCGCCGCCGAGTGAGGGG ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249 HSSTHOR2.1 CAT X51417 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCTCCAACTGGGAATGCTAAAACGGGACTGATGGACGTGTCCGAACTCTGCATCCCGGACCCCCTCGGCTACCACAACCAGTAGGTTGCTGAACCGAATGTCGTCCGAAGACAGGCACCTGGGCTCTAGCTGCGGCTCCTTCATCAAGACGGAGCCATCTAGCCCATCCTCGGGCATTGATGCCCTCAGCCACCACAGCCCCAGCGGCTCGTCGGACGCCAGCGGTGGCTTTGGCATGGCCCTGGGC ...................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 HSSTHPKC.1 CAT X66360 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCTCGCCTCGGGACCCGCGGTCCCCGCTCTTGCTGGATTTTTCAAGCCACATTCAATTGATAGGATGAAAAAATTTAAGAGAAGGCTATCCCTCACACTCCGAGGAAGTCAGACTATTGATGAATCATTGTCTGAATTGGCTGAACAAATGACTATTGAAGAAAACAGCAGCAAGGATAATGAGCCTATTGTGAAGAATGGCAGGCCTCCAACG .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244 HSSTPK.1 CAT X80229 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGATTTCTTGGACAATGAGAGGCATGAGGTGCAGCTGGACATGGAACCCCAGGGCTGCCTGGTGGCTGAGGTCACCTTCCGCAACCCTGTCATTGAGAGGATTCCTCGGCTCCGACGGCAGAAGAAAATTTTCTCCAAGCAGCAAGGGAAGGCCTTCCCACGTGCTAGGCAGATGAACATCGATGTCGCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSSTPKEMK.1 CAT X97630 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTCTTCCCGGCCTCTGTACTTTGCCCTCGCTGCCTGACAGGTTCTGCTGTGGGCTCTGCTGAATGGAAGTCGCTGGTAGTCCTTTTCCCTTTCTCCAGTCGGCCCACCTTGGGACACCTTGACTCCAAGCCCAGCAGTAAGTCCAACATGATTCGGGGCCGCAACTCAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTACCGGCTCCTCAAGACCATTGGCAAGGGTAATTTTGCCAAGGTGAAGTTGGCCCGACACATCCTGACTGGGAAAGAGGTAGCTGTGAAGATC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSSTRNAS.1 CAT X91257 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAGTGCGGCGGTCACAGGCTGAGTGCTGCGGCGCGATCCTTGCTTCCCTGAGCGTTGGCCCGGGAGGAAAGAAGATGGTGCTGGATCTGGATTTGTTTCGGGTGGATAAAGGAGGGGACCCAGCCCTCATCCGAGAGACGCAGGAGAAGCGCTTCAAGGACCCGGGACTAGTGGACCAGCTGGTGAAGGCAGACAGCGAGTGGCGACGATGTAGATTTCGGGCA ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSSTROM2.1 CAT X07820 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAGAAGGTAAGGGCAGTGAGAATGATGCATCTTGCATTCCTTGTGCTGTTGTGTCTGCCAGTCTGCTCTGCCTATCCTCTGAGTGGGGCAGCAAAAGAGGAGGACTCCAACAAGGATCTTGCCCAGCAATACCTAGAAAAGTACTACAACCTCGAAAAGGATGTGAAACAG ......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 298 HSSYKPTK.1 CAT Z29630 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGAAGAGCCGCGGGCCCGGCGGCTGAGGCCACCCCGGCGGCGGCTGGAGAGCGAGGAGGAGCGGGTGGCCCCGCGCTGCGCCCGCCCTCGCCTCACCTGGCGCAGGTGGACACCTGCGCAGGTGTGTGCCCTCCGGCCCCTGAAGCATGGCCAGCAGCGGCATGGCTGACAGCGCCAACCACCTGCCCTTCTTTTTCGGCAACATCACCCGGGAGGAGGCAGAAGATTACCTGGTCCAGGGGGGCATGAGTGATGGGCTTTATTTGCTGCGCCAGAGCCGCAACTACCTGGGTGGC ....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233 HSSYN5.1 CAT Y00451 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTGCCCTTGTCGACTTGAGTGCCCGCCTCCTTCGCCGCCGCCTCTGCAGTCCTCAGCGCAGGAGCCAGCATACTTCCTGAACATGGACAGTGTTGTTGGCCGCTGCCCATTCTTATCGCGAGTCCCCCAGGCCTTTCTGCAGAAAGCAGGCAAATCTCTGTTGTTCTATGCCCAAAACTGCCCCAAGATGATGGAAGTTGGGGCCAAGCAGCCCTCGCGGATTGTCCACTGC ...................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HST519.1 CAT X05044 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGGCTGGTGAGAGAACAAGATCTCTTCCGTGTTCAAGGCAGACTTCCTGCCCCCTGCACCCTGCTCTCTCCCGGGCCTTGAGGTCAGTGTGAGCCCCAAGGGCAAGAACACTTCTGGAAGGGAGAGTGGATTTGGCTGGGCCTCTGGATGGAAGGTCTGGTCTTCTCTCGTCTGAGCCCTGAGTACTACGACCCGGCAAGAGCCCACCTGCGTGATGGGGAGAAATCCTGCCCGTGCGGGCAGGAGGGCCCCCAGGGTGACCTGTTGACCAAAACACAGGAGCTGGGCCGTGACTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 HSTAFII18.1 CAT X84003 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGCTAGTGGGATGGCAGATGAGGAAGAAGACCCCACGTTTGAGGAAGAAAATGAAGAAATTGGAGGAGGTGCAGAAGGTGGACAGGGTAAAAGAAAGAGACTTTTTTCTAAAGAATTGCGATGTATGATGTATGGCTTTGGGGATGACCAGAATCCTTAT ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242 HSTAFII28.1 CAT X83928 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCAAGATCCTGGCCTGTGCAGCTCGGGTTTCCGAGCTTCTGCCTCAGGCATCTCCGCGATCTCCTCTCCCCTCCAATCCTATCCGTGATGGACGATGCCCACGAGTCGCCCTCCGACAAAGGTGGAGAGACAGGGGAGTCGGATGAGACGGCCGCTGTGCCCGGGGACCCGGGGGCTACCGACACCGATGGAATCCCAGAGGAAACTGACGGAGACGCAGATGTGGACTTGAAAGAA ............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231 HSTAMMD.1 CAT X85750 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAAGCCCATGAGGGCCGCGCGCCCGGCCGCCGGTGCTGACGAGACGGAGCTCCTGGCCCCCGAGGAGGAGCAGAGGATCAATGCGGTTCAAGAATCGATTCCAGCGGTTCATGAACCATCGAGCTCCAGCCAATGGCCGCTACAAGCCAACTTGCTATGAACATGCTGCTAACTGTTACACACACGCATTCCTCATTGTTCCGGCCATCGTGGGCAGTGCCCTCCTCCAT .................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246 HSTATR.1 CAT X52520 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTGCCCCTGTAACCTGTCAAAGAAGAGCTAAGGGAGCTTTCGGGGTTGGCTTCTTGGAGGCTGCTTTCTCCTTTACTTGGAAGGCTTCGCTAGTGATGGACCCATACATGATTCAGATGAGCAGCAAAGGCAACCTCCCCTCAATTCTGGACGTGCATGTCAACGTTGGTGGGAGAAGCTCTGTGCCGGGAAAAATGAAAGGCAGAAAGGCCAGGTGGTCTGTGAGGCCCTCAGACATGGCCAAG ................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSTAUI.1 CAT X14474 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTCGACTATCAGGTGAACTTTGAACCAGGATGGCTGAGCCCCGCCAGGAGTTCGAAGTGATGGAAGATCACGCTGGGACGTACGGGTTGGGGGACAGGAAAGATCAGGGGGGCTACACCATGCACCAAGACCAAGAGGGTGACACGGACGCTGGCCTGAAAGCTGAAGAAGCAGGCATT ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 276 HSTCD1.1 CAT X57637 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGAGAAGACCAAGGAGGGCGTCCTCTACGTCGGAAGCAAGACCTTGTTCATCAGGATATTAAGAGATCACATTTTATGAATATTTAAAGACTCAAAAATTAACCCCCAACCTCCAATATATTGTCATGCATTCAATTGCAATGACATCAGAGACAGCCAGCAGCACCATAGATGGTCTCAAAGCTACCAAAAACTTTCTTCACTGTCTTGGGCGGTATGGCAACACTCCATTTTTGTTTCCTTTATATGGCCAAGGAGAACTCCCCCAGTGTTTC ..............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTCELB.1 CAT X58158 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCGAAGAGCTTTCCCTAAGGGAGACATCATAAACAGCCCACCTGACATCCCATTTCCTGTTCTGAAGCAGCTACGGCACCAGTGCAGCTGATACTCAAGGTTCGATCAGAAGAGGAGGCTTCTCACCCTGCAGCAGGGACCTGTGAGCATGGCATGCCCTGGCTTCCTGTGGGCACTTGTGATCTCCACCTGTCTTGGTAAGGGAAGGCGCGATGTGATTCACCTTAACCTAGTGATTCAATAGGAACAGAGAAGTGGGAAGAAAGATTAATAGTGCAAGAATCTAATCTCTTCACTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSTCF1A.1 CAT X59869 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGGTGACTGACTAATCCGCCGCCTTCAGGAGACAGAATTGGCCAAGGCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGCACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 HSTCL1.1 CAT X82240 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTGAGAGGCTCTGGCTCTTGCTTCTTAGGCGGCCCGAGGACGCCATGGCCGAGTGCCCGACACTCGGGGAGGCAGTCACCGACCACCCGGACCGCCTGTGGGCCTGGGAGAAGTTCGTGTATTTGGACGAGAAGCAGCACGCCTGGCTGCCCTTAACCATCGAGATAAAGGATAGGTTACAGTTACGGGTGCTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242 HSTCPTK.1 CAT X05027 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGGGAGCTGAGACTGTCCAGGCAGCCAGGTTAGGCCAGGAGGACCATGTGAATGGGGCCAGAGGGCTCCCGGGCTGGGCAGGGACCATGGGCTGTGGCTGCAGCTCACACCCGGAAGATGACTGGATGGAAAACATCGATGTGTGTGAGAACTGCCATTATCCCATAGTCCCACTGGATGGCAAGGGCACGCTGCTCATCCGAAATGGCTCTGAGGTGCGGGACCCACTGGTTACC ............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSTCR10.1 CAT X74850 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTTGCCCACAGGAGAGAAAAGGCCACACAGCACAGGAGCCCGATGCTCATGGCAGGTGCTACAGGATGGAGGGGTCTTCTGGGGCGGGCAAGTCCAGTGAATGCTGGTGTCACTCAGACCCCAAAATTCCAGGTCCTGAAGACAGGACAGAGCATGACACTGCAGTGTGCCCAGGATATGAACCATAACTCC ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSTCRA030.1 CAT X58768 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGCTGACTGGATATTCTGGCAGGCCAAGGATGGAGACTCTCCTGAAAGTGCCTTCAGGCACCTTGTTGTGGCAGTTGACCTGGGTGGGAAGCCAACAACCAGTGCAGAGTCCTCAAGCCGTGATCCTCCGAGAAGGGGAAGATGCTGTCACCAACTGCAGTTCCTCCAAGGCTTTATAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTCRA23.1 CAT X06192 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAACGTTTGTTATTATTTTTTTTTCGTGTTTAAGGTTTGAATCCTCAGTGAACCAGGGCAGAAAAGAATGATGAAATCCTTGAGAGTTTTACTGGTGATCCTGTGGCTTCACTTAAGCTGTGAGTTTTGGGCATCTCTGTAGAAACATAATGTATATTGTTTGCAATTATTGTGTATTCCTAGGCCTGTGGGGGGTTTGGAGCCAACAGAAGGAGGTGGAGCAGGATCCTGGACCACTCAGTGTTCCAGAGGGAGCCATTGTTTCTCTCAACTGCACTTACAGCAACAGTGCTTTTCAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTCRB2X2.1 CAT Z49234 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GACGTAACATCAGTCATGGGCAAAGATTACCACCAGGGGCAGACTAGGGCATCCTTGGGATTCTGTGATCAGTCATCCCTCCTCGCTGGTGAATGGAGGCAGTGGTCACAACTCTCCCCAGAGAAGGTGGTGTGAGGCCATCACGGAAGATGCTGCTGCTTCTGCTGCTTCTGGGGCCAGGTATAAGCCTCCTTCTACCTGGGAGCTTGGGTGGGCATGTGCGTGTGTTGGCATGGTCAAGTGGTGGCCAGCAGGGTTGCAATGTGGATTGTTTATGCTCATCGAAGGGAGAGGGAGAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTCRGV1.1 CAT X04038 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTCTCTGCCTGTGTCTCAGGAAACCAGCTCCTCCTACTGTCTTCTGTGCTAGGGATCACTTCCTTGTTGAGTGGGGCCTGAGTTTTAAGAGGATCTTCTGCTCCTCTTCATCTGGTCCGTTTCCTTCCAAGGCCCCCGAGAGGAAGGCATGCGGTGGGCCCTACTGGTGCTTCTAGCTTTCCTGTCTCCTGCCAGTCAGAAATCTTCCAACTTGGAAGGGAGAACGAAGTCAGTCACCAGGCAGACTGGGTCATCTGCTGAAATCACTTGCGATCTTACTGTAACAAATACCTTCTAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 204 HSTCRT3E.1 CAT X03884 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTAAGTCTGCTGGCCTCCGCCATCTTAGTAAAGTAACAGTCCCATGAAACAAAGATGCAGTCGGGCACTCACTGGAGAGTTCTGGGCCTCTGCCTCTTATCAGTTGGCGTTTGGGGGCAAGATGGTAATGAAGAAATGGGTGGTATTACACAGACACCATATAAAGTCTCCATCTCTGGAACCACAGTAATATTGACATGCCCT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245 HSTE2.1 CAT X77588 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGCCAGCCCCGGCCGTCCCGGCGTCGCTTCGGAGCGCGGCGGCAGCTGACTGCGCCTTCACGATCCGCTGGGACCCGCGAGCCCCGCCGCCGTTATGAACATCCGCAATGCGAGGCCAGAGGACCTAATGAACATGCAGCACTGCAACCTCCTCTGCCTGCCCGAGAACTACCAGATGAAATACTACTTCTACCATGGCCTTTCCTGGCCCCAGCTCTCTTACATTGCTGAGGACGAGAATGGG ...............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTENAS3.1 CAT X78565 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCGCCCATCGGAAAGAAAATAATTCTTTCAAGAAGATCAGGGACAACTGATTTGAAGTCTACTCTGTGCTTCTAAATCCCCAATTCTGCTGAAAGTGAATCCCTAGAGCCCTAGAGCCCCAGCAGCACCCAGCCAAACCCACCTCCACCATGGGGGCCATGACTCAGCTGTTGGCAGGTGTCTTTCTTGCTTTCCTTGCCCTCGCTACCGAAGGTGGGGTCCTCAAGAAAGTCATCCGGCACAAGCGACAGAGTGGGGTGAACGCCACCCTGCCAGAAGAGAACCAGCCAGTGGTGTTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 181 HSTGFAA.1 CAT X70340 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGGAGAGCCTGCTGCCCGCCCGCCCGTAAAATGGTCCCCTCGGCTGGACAGCTCGCCCTGTTCGCTCTGGGTATTGTGTTGGCTGCGTGCCAGGCCTTGGAGAACAGCACGTCCCCGCTGAGTGCAGACCCGCCCGTGGCTGCAGCAGTGGTGTCCCATTTTAATGACTGCCCAGATTCC ...............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 276 HSTGR1.1 CAT X72018 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTCCGGAAGATGGGCATGCTAAATAAGCTGCGGAAGTCCTAAACAAGCATAGTCTGAGCGGAAGACCACTGAAAGTCAAAGAAGATCCTGATGGTGAACATGCCAGGAGAGCAATGCAAAAGGTGATGGCTACGACTGGTGGGATGGGTATGGGACCAGGTGGCCCAGGAATGATTACTATCCCACCCAGTATCCTAAATAATCCCAACATCCCAAATGAGATTATCCATGCATTACAGGCTGGAAGACTTGGAAGCACAGTATTTGTAGCAAAT ..............................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239 HSTHSPAIA.1 CAT Z22548 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCGGCCCCAGGGCTCACTTGGCGCTGAGAACGCGGGTGCAGCGTGTGATCGTCCGTGCGTCTAGCCTTTGCCCACGCAGCTTTCAGTCATGGCCTCCGGTAACGCGCGCATCGGAAAGCCAGCCCCTGACTTCAAGGCCACAGCGGTGGTTGATGGCGCCTTCAAAGAGGTGAAGCTGTCGGACTACAAAGGGAAGTACGTGGTCCTCTTTTTCTACCCTCTGGACTTCACTTTTGTG .........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 191 HSTHYRR.1 CAT X05615 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAGTGGTTTCTCCTCCTTCCTCCCAGGAAGGGCCAGGAAAATGGCCCTGGTCCTGGAGATCTTCACCCTGCTGGCCTCCATCTGCTGGGTGTCGGCCAATATCTTCGAGTACCAGGTTGATGCCCAGCCCCTTCGTCCCTGTGAGCTGCAGAGGGAAACGGCCTTTCTGAAGCAAGCAGACTACGTGCCC .........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSTIEMR.1 CAT X60957 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCTCGTCCTGGCTGGCCTGGGTCGGCCTCTGGAGTATGGTCTGGCGGGTGCCCCCTTTCTTGCTCCCCATCCTCTTCTTGGCTTCTCATGTGGGCGCGGCGGTGGACCTGACGCTGCTGGCCAACCTGCGGCTCACGGACCCCCAGCGCTTCTTCCTGACTTGCGTGTCTGGGGAGGCCGGGGCG ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 282 HSTITIN2B.1 CAT X90568 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTAGAGGCTCACCGATTCATGTCGGAGATGGTCAGAAAAACCAACTCTCCATAGGACGTCGTTTCAGAAGCAACCTTGGGCTTAGTCCCACCCTTTTTAGGCACTCTTGAGAAATCAGAGTGCCTAGAAAGATGACAACTCAAGCACCGACGTTTACGCAGCCGTTACAAAGCGTTGTGGTACTGGAGGGTAGTACCGCAACCTTTGAGGCTCACATTAGTGGTTTTCCAGTTCCTGAGGTGAGCTGGTTTAGGGATGGCCAGGTGATTTCCACTTCCACT ....................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222 HSTM1CEA.1 CAT X16354 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGCCGTGCTCGAAGCGTTCCTGGAGCCCAAGCTCTCCTCCACAGGTGAAGACAGGGCCAGCAGGAGACACCATGGGGCACCTCTCAGCCCCACTTCACAGAGTGCGTGTACCCTGGCAGGGGCTTCTGCTCACAGCCTCACTTCTAACCTTCTGGAACCCGCCCACCACTGCCCAGCTCACTACTGAATCCATGCCATTCAATGTTGCAGAGGGGAAGGAG ........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 HSTMP21I.1 CAT X97442 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTCCAGCACCATGTCTGGTTTGTCTGGCCCACCAGCCCGGCGCGGCCCTTTTCCGTTAGCGTTGCTGCTTTTGTTCCTGCTCGGCCCCAGATTGGTCCTTGCCATCTCCTTCCATCTGCCCATTAACTCTCGCAAGTGCCTCCGTGAGGAGATTCACAAG ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220 HSTRANSK.1 CAT X67688 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGCTGTCAGCTCGCAGCAGCCACTATCTCTGTGTGTCCGCGTGTGCGCCCGGTCCCCGCCTGCCGCACCATGGAGAGCTACCACAAGCCTGACCAGCAGAAGCTGCAGGCCTTGAAGGACACGGCCAACCGCCTACGTATCAGCTCCATCCAGGCCTCCTCTGCGGCGGGCTCTGGCCACCCCACGTCATGCTGCAGCGCCGCAGTGATCATGGCTGTC ......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 169 HSTRDV08.1 CAT X14548 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCATCTTCACAGGAGGGATGGCCATGCTCCTGGGGGCATCAGTGCTGATTCTGTGGCTTCAGCCAGACTGGGTAAACAGTCAACAGAAGAATGATGACCAGCAAGTTAAGCAAAATTCACCATCCCTGAGCGTCCAGGAAGGAAGAATTTCTATTCTGAACTGTGAC ...................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 256 HSTRDV3M.1 CAT X13954 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCTCTTGTTTTCCTCCCGTCTTCTTTCATTAGAACCGTCAGATAGTCTCTGAGATCTTAGGAACCCTGTTTTGTTGTATATCCTCTGCCCTGATATGAAGAAAAGATGATTCTTACTGTGGGCTTTAGCTTTTTGTTTTTCCAGGGGCACGCTGTGTGACAAAGTAACCCAGAGTTCCCCGGACCAGACGGTGGCGAGTGGCAGTGAGGTGGTACTGCTCTGCACTTACGACACTGTATATTCAAATCCAGATTT ..........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 181 HSTRE213.2 CAT X63547 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCCTGGGGGCAGTCCCAGGAGCCACCCACCATGCCCCAACGGCTTCCCCATGCCAGGCAGCACACACCCCTCCCTCTGGGATCAGCAGACTACAGGCGTGTCGTCAGTGTCAGACCACAGGGGCCACACAGAGACCCCAAGGACTCCAGAGATGCAGCCAAACGCGAGCAAGGGTCCTTG ...............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 193 HSTRECP.1 CAT Z17227 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCGTGTGCTTGGAGGAAGCCGCGGAACCCCCAGCGTCCGTCCATGGCGTGGAGCCTTGGGAGCTGGCTGGGTGGCTGCCTGCTGGTGTCAGCATTGGGAATGGTACCACCTCCCGAAAATGTCAGAATGAATTCTGTTAATTTCAAGAACATTCTACAGTGGGAGTCACCTGCTTTTGCCAAAGGGAACCTG ...........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 167 HSTRKT3ON.1 CAT X85960 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACATCCTGGAGTCCACCATGAACGGACAGTTGGATCTAAGTGGGAAGCTAATCGTCAAAGCTCAACTTGGGGAGGATATTCGGCGAATTCCTATTCATAATGAAGATATTACTTATGATGAATTAGTGCTAATGATGCAACGAGTTTTCAGAGGAAAACTTCTGAGT MMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTROISOA.1 CAT Z24727 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTTGAATACAAAGCAGAAATATTTCGACCTTCTCATTTCTGGGGTGGGAGTGGGGAGTGTTCATTAAGTACATATGACAAGAGGGAGTGTGGGGAGAAGGTGAAACAGTAGACTACATTTATGGATTAAGTAGGGAATGTGAACAAAGATGTTAAAGTCATGGCGATCCGGTAGACAGATTACACAGAAGGGGACCGAAGATGAACTGGACAAATACTCTGAGGCTCTCAAAGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGATGCTGAAGCCGACGTAGCTTCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239 HSTROPONC.1 CAT X54163 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGAAGGTCACCCGGGCGGCCCCCTCACTGACCCTCCAAACGCCCCTGTCCTCGCCCTGCCTCCTGCCATTCCCGGCCTGAGTCTCAGCATGGCGGATGGGAGCAGCGATGCGGCTAGGGAACCTCGCCCTGCACCAGCCCCAATCAGACGCCGCTCCTCCAACTACCGCGCTTATGCCACGGAGCCGCACGCCAAGAAAAAATCTAAGATCTCCGCCTCGAGAAAATTGCAGCTGAAG .........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTRPC1GN.1 CAT X89066 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATAAAAACATCCTTTTACCCATTCAACACTAGAAATAGGTTATTCTTTCATTGTTTTAGGATTATATTCTCAAAGACTTAGAAGGGAGATTAAGAGGAATTTGATATAGCAAGCAGTTTTTAAAACATAATTGCAAAAGCAGTTGATGAATGTGCCCAGGAATTCCCGGGCCTCGAGCCGAGGCAGCAGTGGGAACGACTCATCCTTTTTCCAGCCCTGGGGCGTGGCTGGGGTCGGGGTCGGGGTCGGGGCCGGTGGGGGCCCCGCCCCCGTCTCCTGGCCTGCCCCCTTCATGGGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 HSTSC2.1 CAT X75621 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTGCGTCCTGGTCCACCATGGCCAAACCAACAAGCAAAGATTCAGGCTTGAAGGAGAAGTTTAAGATTCTGTTGGGACTGGGAACACCGAGGCCAAATCCCAGGTCTGCAGAGGGTAAACAGACGGAGTTTATCATCACCGCGGAAATACTGAGAGAACTGAGCATG ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 HSTSPM.1 CAT X67698 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGATTCCGGATGCGTTTCCTGGCAGCTACATTCCTGCTCCTGGCGCTCAGCACCGCTGCCCAGGCCGAACCGGTGCAGTTCAAGGACTGCGGTTCTGTGGATGGAGTTATAAAGGAAGTGAATGTGAGCCCATGCCCCACCCAACCCTGCCAGCTGAGC ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 164 HSTTF1.1 CAT X82850 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCGCCGCCGAATCATGTCGATGAGTCCAAAGCACACGACTCCGTTCTCAGTGTCTGACATCTTGAGTCCCCTGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCGGCGGCCTCGGGGCTCCGCTGGCGGCGTACAGGCAGGGCCAGGCGGCACCGCCAACA ..............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244 HSTUMP.1 CAT X16064 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCCCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTCCGAGTTTCAGGCTCGTGCTAAGCTAGCGCCGTCGTCGTCTCCCTTCAGTCGCCATCATGATTATCTACCGGGACCTCATCAGCCACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGTTGTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAAGGTAACATTGATGACTCGCTCATTGGTGGA ..............................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253 HSTY.1 CAT X94993 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAACAACGTGGCTGGACAAACATCTATCCAGACCCTAGTACCTAATACGGATCAAAAGTCGACCAGTGTAAAAAAAGACAACCACAAAAAAAAAACAGTTAAGATGTTGGAATACCTGGGCAAAGATGTTCTTCATGGTGTTTTTAATTATTTGGCAAAACACGATGTTCTGACATTGAAGGAAGAGGAAAAGAAAAAATATTATGATGCCAAAATTGAAGACAAGGCCCTGATCTTGGTAGACTCTTTGCGA .......................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSTYRPH.1 CAT X82676 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCCAGAGGGCCACACTGGGCATGGACACCCTTTTCCCTGCCTGGAGGAGCACAGGTGATAGTGTAATTTTCCAGTCACGAAACTGCTAAGGCCATCTCAGGGGCGTGTGCGCAGGATAGGCAGGCGGCGTCCGAGGACCACATAGCCATGCCTTTTGGTCTGAAGCTCCGCCGGACACGGCGCTACAACGTCCTGAGCAAGAACTGCTTTGTCACACGGATTCGCCTGCTGGACAGCAATGTTATCGAGTGCACGCTGTCGGTGGAAAGCACAGGGCAAGAATGCCTGGAGGCTGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 279 HSTYRRP.1 CAT X51420 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTCTAAGAGAAGTTCATCAGAGACATCCTTCAGGATTGTGAGCTGGATTTTCCTCTACGTGCTTCAGTCTTCTCTACACAAAGAGCTGCAAACCAGGTCTTTGTTTTGCACTCTTATTTCAAGCAGAATGAGTGCTCCTAAACTCCTCTCTCTGGGCTGTATCTTCTTCCCCTTGCTACTTTTTCAGCAGGCCCGGGCTCAATTCCCAAGACAGTGTGCCACTGTTGAGGCTTTGAGAAGTGGTATGTGTTGCCCAGACCTGTCCCCTGTGTCTGGG .................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU01828.1 CAT U01828 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGAAGCATTGATTGGGAGCTACTCATTCAGAAAATTAAAAGAAAGAAGCCAGAAAATATTATCAACCCTTTGAGAACACGACACAACGAACTTTATATTTTACCACTTCCTTGAATAGTTGCAGGAGAAATAACAAGGCATTGAAGAATGGCAGATGAACGGAAAGACGAAGCAAAGGCACCTCACTGGACCTCAGCACCGCTAACAGAGGCATCTGCACACTCACATCCACCTGAGATTAAGGATCAAGGCGGACGAGGGGAAGGACTTGTCCGAAGCGCCAATGGATTCCCATAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU01877.1 CAT U01877 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGAAGAGAAAAAGGAACTTCCCCCACCCCCTCGGGTGCCGTCGGAGCCCCCCAGCCCACCCCTGGGTGCGGCGCGGGGACCCCGGGCCGAAGAAGAGATTTCCTGAGGATTCTGGTTTTCCTCGCTTGTATCTCCGAAAGAATTAAAAATGGCCGAGAATGTGGTGGAACCGGGGCCGCCTTCAGCCAAGCGGCCTAAACTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGATGGCACAGATTTTGGCTCTCTATTTGACTTGGAGCACGACTTACCAGATGAATTAATCAACTCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU02523.1 CAT U02523 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCACATGTAATTAAAAGTAGGTATAAATATGACTGAGCAGTGACGTGACATGCAGCCCGCGGTCTGTACGGACGCGCCCTCGCTTCTTCCTCTTTCTCGACTCCATCTTCGCAGTAGTGGCAGCTGGGACCGCGGTTCAGTCACCAATATGCAGCTCTTTGTCCGCGCCCAGGAGCTACACACCCTTGAGGTGACTGGCCAGGAAATGGTCGCCCAGATCAAGGCTCATGTAGCCTCACTGGAGGGCATTGCCCCGGAAGATCAAGTCGTGCTCCTGGCAGGTGCACCGCTGGAGGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218 HSU02556.1 CAT U02556 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGGCCAGTGCGCGGCCGCGGTGCTCTACCGGCGTGTCGCTCCGCCCCAGGGAGAGCCGGCGCTACCATGGAGGAGTACCATCGCCACTGCGACGAGGTTGGCTTCAATGCTGAGGAAGCCCACAATATTGTCAAAGAGTGTGTAGATGGGGTTTTAGGTGGTGAAGATTATAATCACAACAACATCAACCAGTGGACTGCAAGCATAGTGGAACAA ....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU02609.1 CAT U02609 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGACCAGGAGGACATCACTGCCTTTGACCTCAGCCCTGACAACGAGGTGCTGGTGACGCCAGTCGGGCATTGCTGCTGGCTCAGTGGGCCTGGCAAGAGGGCAGCGTTACCCGCCTGTGGAAGGCGATACACACGCCCCCGTGGCCACCATGGCCTTCGACCCCACCTCCACTCTGCTAGCCACAGGTGGCTGTGATGGGGCCGTGCGCGTCTGGGACATCGTGCGGCACTACGGGACACACCACTTCCGAGGCTCGCCCGGTGTCGTGCACCTAGTGGCCTTCCACCCGGACCCTACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSU02619.1 CAT U02619 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGGACCAAGGCCCTTGGCGGTGCGTTGCGCACCCCCGGGGCGCCGCGACTGAAGTAGCAATGGACGCGCTGGAGTCGTTGTTGGACGAAGTCGCTCTGGAGGGGCTCGATGGCCTGTGTCTGCCAGCGCTGTGGAGCCGGCTGGAGACGCGAGTGCCGCCCTTCCCGCTGCCTTTGGAACCCTGCACGCAGGAGTTTCTCTGGCGGGCC ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSU02680.1 CAT U02680 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGCCGGCCGGGGCGCCTGGCTGCACTCAGCGCCGGAGCCGGGAGCTAGCGGCCGCCGCCATGTCCCACCAGACCGGCATCCAAGCAAGTGAAGATGTTAAAGAGATCTTTGCCAGAGCCAGAAATGGAAAGTACAGACTTCTGAAAATATCTATTGAAAATGAGCAACTTGTGATTGGATCATATAGTCAGCCTTCAGATTCCTGGGAT ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU02683.1 CAT U02683 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGTTTCCTTTAATTCTTACGCATGTTTTTAATTCTATATCGACACCGTGTGATACTTTCTTTACGTGGTCCTTTATTTGATATTAAAATATATTCCGTCGCAGTCTCCACGGCGCAGGCCCACGGTAGCGCAGCCGCTCTGAGAACTTCATGGAGGAACACGGAGTGACCCAAACCGAACATATGGCTACCATAGAAGCACATGCAGTGGCCCAGCAAGTGCAGCAGGTCCATGTGGCTACTTACACCGAGCATAGTATGCTGAGTGCTGATGAAGACTCGCCTTCTTCGCCCGAGGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 207 HSU02687.1 CAT U02687 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAGGCGGCATCCGAGGGCTGGGCCGGCGCCCTGGGGGACCCCGGGCTCCGGAGGCCATGCCGGCGTTGGCGCGCGACGCGGGCACCGTGCCGCTGCTCGTTGTTTTTTCTGCAATGATATTTGGGACTATTACAAATCAAGATCTGCCTGTGATCAAGTGTGTTTTAATCAATCATAAGAACAATGATTCATCAGTGGGGAAGTCA .........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 258 HSU02882.1 CAT U02882 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAATTCCATTTTCCCTCCCTTTTCTCCAAGCAAATTTTGTCCACAGTCAACGACGGGAGTCCTTCCTGTATCGATCCGACAGCGATTATGACCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATATACACGGAGATGACTTGATTGTGACTCCATTTGCTCAGGTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAAAAGATCA ............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU03056.1 CAT U03056 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTCAATGTTTAACAGAAACCAGAGCAGCGGTGGATTAATGCGCAAGGGCTCAGCCCCCCAGCCCTGAGCAGTGGGGGAATCGGAGACTTTGCAACCTGTTCTCAGCTCTGCCTCCCCTGGGCAGGTTGTCCTCGACCAGTCCCGTGCCATGGCAGGCCACCTGCTTCCCATCTGCGCCCTCTTCCTGACCTTACTCGATATGGCCCAAGGCTTTAGGGGCCCCTTGGTACCCAACCGGCCCTTCACCACCGTCTGGAATGCAAACACCCAGTGGTGCCTGGAGAGGCACGGTGTGGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 HSU03090.1 CAT U03090 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGATACCAATGTTCCGACTGGAGACGGGGAGCCCGCGAGACCCGGGTCTCCAGGGTCTGCCCAAGGAAGTTGCTCATGGGAGCAGACCCCTAGAGCAGGATTTGAGGCCAGGCCAAAGAGAACCCCAGAGATGAAAGGCCTCCTCCCACTGGCTTGGTTCCTGGCTTGTAGTGTGCCTGCTGTGCAAGGAGGCTTGCTGGACCTAAAATCAATGATCGAGAAGGTGACAGGGAAGAACGCCCTGACAAACTACGGCTTCTACGGCTGTTACTGCGGCTGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 263 HSU03105.1 CAT U03105 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGTTCCGCGATCTTCTCAGGCTCTCCTAGCAGCATCCATCGCCGCCACCCTATCTTCACTGGCTTCACCTTCTCCTTCTCTCTTCGTTGCTGAGCGACAAGCTTCCTAGCGCTATGACTGTCGTCTCCGTCCCGCAGCGGGAGCCGCTCGTCCTGGGTGGCCGCCTTGCGCCGCTTGGCTTTTCCTCCCGAGGTTACTTTGGGGCCCTCCCGATGGTGACCACGGCTCCGCCTCCTTTACCCCGGATCCCGGACCCCCGGGCA .................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 HSU03269.1 CAT U03269 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTGTCGCCAGAAGGAAGATGGCGGATCTGGAGGAGCAGTTGTCTGATGAAGAGAAGGTGCGTATAGCAGCAAAATTCATCATTCATGCCCCTCCTGGAGAATTTAATGAGGTTTTCAATGATGTTCGGTTACTGCTTAATAATGACAATCTTCTCAGGGAAGGAGCA ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 185 HSU03274.1 CAT U03274 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCAGCTGGAGCGTTTTCGGGGCTGTAAAGGGAGAATGGCGCATGCGCATATTCAGGGCGGAAGGCGCGCTAAGAGCAGATTTGTGGTCTGCATTATGTCTGGAGCCAGAAGTAAGCTTGCTCTTTTCCTCTGCGGCTGTTACGTGGTTGCCCTGGGAGCCCACACCGGGGAGGAGAGCGTGGCT ...................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 HSU03291.1 CAT U03291 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTAGATCCGATTACTGATGGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGACACCAGACCACGTTTCTTGGAGTACTCTACGTCTGAGTGTCATTTCTTCAATGGGACGGAGCGGGTGCGGTTCCTGGACAGATACTTCCATAACCAGGAGGAGTTCGTGCGCTTC ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSU03504.1 CAT U03504 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAGAAGAGACCCTCCTAGAAAAGTAAAATATGACTAAAAGCAATGGAGAAGAGCCCAAGATGGGGGGCAGGATGGAGAGATTCCAGCAGGGAGTCCGTAAACGCACACTTTTGGCCAAGAAGAAAGTGCAGAACATTACAAAGGAGGATGTTAAAAGTTACCTGTTTCGGAATGCTTTT ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU03634.1 CAT U03634 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTCCTTTGTGTCTGTTTAAAAAATGTTTCTTATTACAGAAAATTTCAAATAGATTTAAAGTAGAGAAATGCACGTGATGAAACCCCATGCACTTGCCATTCCATTTCAATAGTTATTACTTCACGGAAGAGTTGGCAATGATGAGAACATGTCAAACACCTGGAAATTCCTGTCTCATTCAACAGACTCACTAAATAAAATCAGCAAGGTCAATGAGTCAACAGAATCACTTACTGATGAGGGTACAGACATGAATGAAGGACAACTACTGGGAGACTTTGAGATTGAGTCCAAACAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU03642.1 CAT U03642 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGAGTGCTGGGAAGGACTCTGGGCATCTTCAGCCCTTCTTACTCTCTGAGGCTCAAGCCAGAAATTCAGGCTGCTTGCAGAGTGGGTGACAGAGCCACGGAGCTGGTGTCCCTGGGACCCTCTGCCCGTCTTCTCTCCACTCCCCAGCATGGAGGAAGGTGGTGATTTTGACAACTACTATGGGGCAGACAACCAGTCTGAGTGTGAGTACACAGACTGGAAATCCTCGGGGGCCCTCATCCCTGCCATCTACATGTTGGTCTTCCTCCTGGGCACCACGGGAAACGGTCTGGTGCTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU03643.1 CAT U03643 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGACCTGGGAAGCCAAAGTTCAGCTCAAAGAGATTTTGATTAATTCTGGGTTTCCAGAAGATTGTTTGTTGACACAAGTGTTTACTAACACTGGACCAGATAATAATTTGGATGTTGTTATCTCCCTCCTGGCCTTTGTAGCCAAGACATGAAGTACCCATCTCCCTTCTTTGTATTTGGTGAAAAGATTCGAACTCGAGCCATCTCTGCTAAAGGCATGACTTTAGTCACCCCCCTGCAGTTGCTTCTCTTTGCCTCCAAGAAAGTCCAATCTGATGGGCAGATTGTGCTTGTAGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSU03644.1 CAT U03644 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGCCCCTGCTTTCCCTAGTTCCAGTTCCAAGATGGGGAAATCCTTCGCCAACTTCATGTGCAAGAAAGACTTTCATCCTGCCTCCAAATCCAATATCAAAAAAGTATGGATGGCAGAACAGAAAATATCATATGATAAGAAGAAACAAGAAGAATTGATGCAGCAATATCTTAAAGAACAA ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 273 HSU03865.1 CAT U03865 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCAGGAGGGCGCCTCTGGGAAGAAGACCACGGGGGAAGCAAAGTTTCAGGGCAGCTGAGGAGCCTTCGCCGCAGCCCTTCCGAGCCCAATCATCCCCCAGGCTATGGAGGGCGGACTCTAAGATGAATCCCGACCTGGACACCGGCCACAACACATCAGCACCTGCCCACTGGGGAGAGTTGAAAAATGCCAACTTCACTGGCCCCAACCAGACCTCGAGCAACTCCACACTGCCCCAGCTGGACATCACCAGGGCCATCTCTGTGGGCCTG ...........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU03877.1 CAT U03877 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGAATGAAGTGTGTCAACCACTATGGAGGATACCTCTGCCTTCCGAAAACAGCCCAGATTATTGTCAATAATGAACAGCCTCAGCAGGAAACACAACCAGCAGAAGGAACCTCAGGGGCAACCACCGGGGTTGTAGCTGCCAGCAGCATGGCAACCAGTGGAGTGTTGCCCGGGGGTGGTTTTGTGGCCAGTGCTGCTGCAGTCGCAGGCCCTGAAATGCAGACTGGCCGAAATAACTTTGTCATCCGGCGGAACCCAGCTGACCCTCAGCGCATTCCCTCCAACCCTTCCCACCGT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSU03886.1 CAT U03886 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTACAGCTAGAATGAAGCACATCAACCTATCATTTGCAGCGTGTGGATTTCTGGGCATTTACCACTTGGGGGCAGCATCTGCACTTTGCAGACATGGCAAAAAACTTGTGAAGGATGTCAAAGCCTTCGCTGGGGCGTCTGCGGGATCGTTGGTTGCTTCT MMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218 HSU04045.1 CAT U04045 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCGACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCACGGCGAGGACGCG ....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 268 HSU04209.1 CAT U04209 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTCGCGCAGCTGTGTTCGCGGACTCAGGTGGAAGGAATTTCTTCTCTTCGTTGACGTTGCTGGTGTTCACTGTTTGGAATTAGTCAAGTTTCGGGAATCACCGTCGCTGCCATCAACATGTCGGTCCCAAGCGCTCTCATGAAGCAACCGCCCATTCAGTCTACGGCTGGGGCCGTCCCAGTTCGCAATGAGAAAGGTGAGATTTCAATGGAAAAAGTGAAGGTAAAGCGTTATGTGTCCGGAAAAAGGCCAGACTATGCCCCTATG ......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSU04313.1 CAT U04313 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCACGAGTTGTGCTCCTCGCTTGCCTGTTCCTTTTCCACGCATTTTCCAGGATAACTGTGACTCCAGGCCCGCAATGGATGCCCTGCAACTAGCAAATTCGGCTTTTGCCGTTGATCTGTTCAAACAACTATGTGAAAAGGAGCCACTGGGCAATGTCCTCTTCTCTCCAATCTGTCTCTCCACCTCTCTGTCACTTGCTCAAGTGGGTGCTAAAGGTGACACT ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU04628.1 CAT U04628 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCTGGGCAAAGCCTTTGGGGAGCAGTTTGGAGGTGGAAACCCAGAACTACTGACATAGATGGTGTCCAAGGGCTTCCTAGGTCGCCAGTCTGGGAAGGGCTTTTCCATCTATCAGGAGAGTGTGAAGAATAAGAATTTGAATTCTGACATGAACGGTATTTTAGCAAGTCTGAAGATGCCTCCTAAGTCTGAAGTCTCCTCAGATGAAGACATCCAGTTCCGCCTGCTGACAAGATTTGTGAATGAGGCAGTCACGTGCCCGCAAGAGGGGATCTTGGCCACACCTGCAGAGGGAGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 283 HSU04636.1 CAT U04636 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTGTCATACGACTTGCAGTGAGCGTCAGGAGCACGTCCAGGAACTCCTCAGCAGCGCCTCCTTCAGCTCCACAGCCAGACGCCCTCAGACAGCAAAGCCTACCCCCGCGCCGCGCCCTGCCCGCCGCTCGGATGCTCGCCCGCGCCCTGCTGCTGTGCGCGGTCCTGGCGCTCAGCCATACAGCAAATCCTTGCTGTTCCCACCCATGTCAAAACCGAGGTGTATGTATGAGTGTGGGATTTGACCAGTATAAGTGCGATTGTACCCGGACAGGATTCTAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 188 HSU04641.1 CAT U04641 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGTTCTTACCCATTTAAAGTTTGACCAAACACTAAGGATGCTGAAGTTCCGAACAGTCCATGGGGGCCTGAGGCTCCTGGGAATCCGCCGAACCTCCACCGCCCCCGCTGCCTCCCCAAATGTCCGGCGCCTGGAGTATAAGCCCATCAAGAAAGTCATGGTGGCCAACAGAGGTGAGATTGCCATC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU04678.1 CAT U04678 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCACTGACCTCTTCTTTGTCACCAACACAATCCCCAAGATGCTGGTGAACCTCCAGTCCCATAACAAAGCCATCTCCTATGCAGGGTGTCTGACACAGCTCTACTTCCTGGTCTCCTTGGTGGCCCTGGACAACCTCATCCTGGCTGTGATGGCATATGACCGCTATGTGGCCATCTGCTGCCCCCTCCACTACACCACAGCCATGAGCCCTAAGCTCTGTATCTTACTCCTTTCCTTGTGTTGGGTCCTATCCGTCCTCTATGGCCTCATACACACCCTCCTCATGACCAGAGTGACC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSU04735.1 CAT U04735 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGTACAGTCATCACAAGCCTGTTCGGCGGGACTGTGATGGCCAGAGAGATGACGATCTTAGGATCGGCTGTTTTGACTCTCCTGTTGGCCGGCTATTTGGCACAACAGTATTTACCATTGCCTACTCCTAAAGTGATTGGTATTGATCTTGGCACCACCTATTGTTCTGTTGGGGTGTTTTTTCCT ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 260 HSU04810.1 CAT U04810 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCAGGAACAGCTTGAGGTACCTGAGCCCTGCCCTCCAGCAGCACCCGAGAGGGTCAGGAGAAAAGCGGAGGAAGCTGGGTAGGCCCTGAGGGGCCTCGGTAAGCCATCATGACCACCCGGCAAGCCACGAAGGATCCCCTCCTCCGGGGTGTATCTCCTACCCCTAGCAAGATTCCGGTACGCTCTCAGAAACGCACGCCTTTCCCCACTGTTACATCGTGCGCCGTGGACCAGGAGAACCAAGATCCAAGGAGATGG ..............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSU04811.1 CAT U04811 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGCTGGGCCCTGGAATTGGGATGACATGGATATCGACTGCCTAACAAGGGAAGAGTTAGGCGATGATTCTCAGGCCTGGAGCAGATTTTCATTTGAAATTGAGGCCAGAGCCCAAGAAAATGCAGATGCCAGCACCAACGTCAACTTCAGCAGAGGAGCTAGTACCAGGGCTGGC ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU04819.1 CAT U04819 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGCCACCGCGCCCGGCCTCCATATCCATTCTTGGGAACACTTGTTGCTTAGCTGAACGGAGCCCGCATCCTGCTGTGGCGGCACTCGCCCCGGTGCTGGTCTGAGCAGACGCCTCCTTTCTCTTGCAGAAGAAGTAAGTGAGGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTTGGTTGTTCCAGAGTCACGGTTCGACCGAGATTCCGGGGAGAGTGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAACGCCGCAGAGCAGCGCCCTGACAGAGGGCGACTAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 210 HSU04840.1 CAT U04840 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGACAAAACAAAAGGGAGAACCTTCTCCCGGTAGCAGCGGCAGGAACTGCAAACATGATGGCGGCAGCTCCCATCCAGCAGAACGGGACCCACACTGGGGTTCCCATAGACCTGGACCCGCCGGACTCGCGGAAAAGGCCGCTGGAAGCCCCCCCTGAAGCCGGCAGCACCAAGAGGACCAATACGGGCGAAGACGGCCAGTAT ............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 HSU04847.1 CAT U04847 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCCCGGCCCCGCCCCAGCCCTCCTGATCCCTCGCAGCCCGGCTCCGGCCGCCCGCCTCTGCCGCCGCAATGATGATGATGGCGCTGAGCAAGACCTTCGGGCAGAAGCCCGTGAAGTTCCAGCTGGAGGACGACGGCGAGTTCTACATGATCGGCTCCGAGGTGGGAAACTACCTCCGTATGTTCCGAGGTTCTCTGTACAAGAGATACCCCTCACTC .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSU04899.1 CAT U04899 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGGGGACTCCATAGTACACTGGGGCAAAGCACAGCCCCAGTTTCTGGAGGCAGATGGGTAACCAGGAAAAGGCATGAATGAGGGGGCCCCAGGAGACAGTGACTTAGAGACTGAGGCAAGAGTGCCGTGGTCAATCATGGGTCATTGTCTTCGAACTGGACAGGCCAGAATGTCTGCCACACCCACACCTGCAGGTGAAGGAGCCAGAAGCTCTTCAACCTGT ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235 HSU04953.1 CAT U04953 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGCAGCGTGGACCCCGGATGAGTTGCTTTTAGGCTTGCTGGCCCGCGGGGCTGTCCAGGCACGCGAGGCCCCTCAGCAACAAAATGCTTCAACAAGTTCCAGAAAACATAAATTTTCCTGCTGAAGAAGAGAAAATCTTGGAGTTTTGGACTGAATTTAATTGTTTTCAGGAATGCTTAAAGCAATCAAAACATAAACCAAAATTTACCTTCTATGATGGTCCTCCTTTTGCA .....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 260 HSU05340.1 CAT U05340 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACGCGTCCGGGCGTAAGCCAGGCGTGTTAAAGCCGGTCGGAACTGCTCCGGAGGGCACGGGCTCCGTAGGCACCAACTGCAAGGACCCCTCCCCCTGCGGGCGCTCCCATGGCACAGTTCGCGTTCGAGAGTGACCTGCACTCGCTGCTTCAGCTGGATGCACCCATCCCCAATGCACCCCCTGCGCGCTGGCAGCGCAAAGCCAAGGAAGCCGCAGGCCCGGCCCCCTCACCCATGCGGGCCGCCAACCGATCCCAC ..............................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 HSU05659.1 CAT U05659 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACACAGAGAGCCACGGCCAGGGCTGAAACAGTCTGTTGAGTGCAGCCATGGGGGACGTCCTGGAACAGTTCTTCATCCTCACAGGGCTGCTGGTGTGCCTGGCCTGCCTGGCGAAGTGCGTGAGATTCTCCAGATGTGTTTTACTGAACTACTGGAAAGTTTTGCCAAAGTCTTTCTTGCGGTCAATGGGACAGTGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 290 HSU06155.1 CAT U06155 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGTCTAGATATTTAATGCAAATCTTTTACTTAGCTTAACTTTAAGGTTAAAAATTACCAAAAGTACTTTGGAAACTATTCATAGGCAGATTTACTGTAAACAAATTATTTTTGAAATAATGTTTTTCGCTTTTCACAAGATGGCACCGAAAGCGAAGGAAGCTCCTGCTCCTCCTAAAGCCGAAGCCAAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAGAAGATCCGCATGTCACCCACCTTCAGGCGGCCCAAGA ............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 203 HSU06452.1 CAT U06452 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCAGACAGAGGACTCTCATTAAGGAAGGTGTCCTGTGCCCTGACCCTACAAGATGCCAAGAGAAGATGCTCACTTCATCTATGGTTACCCCAAGAAGGGGCACGGCCACTCTTACACCACGGCTGAAGAGGCCGCTGGGATCGGCATCCTGACAGTGATCCTGGGAGTCTTACTGCTCATCGGCTGTTGGTATTGTAGAAGA .....................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSU06632.1 CAT U06632 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCCGTTGAGCACCAAGCAAGATGGCAGCTTCCGAGACGGTTAGGCTACGGCTTCAATTTGATTACCCGCCGCCAGCTACCCCGCACTGTACGGCCTTCTGGCTTCTGGTCGACTTGAACAGATGCCGAGTCGTCACAGATCTCATTAGTCTCATCCGCCAGCGCTTCGGC ......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSU06643.1 CAT U06643 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTAAAGCAAAGAATTCCCCGGTCCCAGCCATGTCCAACGTCCCCCACAAGTCCTCGCTGCCCGAGGGCATCCGCCCTGGCACGGTGCTGAGAATTCGCGGCTTGGTTCCTCCCAATGCCAGCAGGTTCCATGTAAACCTGCTGTGCGGGGAGGAGCAGGGCTCCGATGCCGCCCTGCAT .............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241 HSU06863.1 CAT U06863 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCGGGGCGATCGGCGGAGCTCCCACCTCCGCTTACAGCTCGCTGCCGCCGTCCTGCCCCGCGCCCCCAGGAGACCTGGACCAGACCACGATGTGGAAACGCTGGCTCGCGCTCGCGCTCGCGCTGGTGGCGGTCGCCTGGGTCCGCGCCGAGGAAGAGCTAAGGAGCAAATCCAAGATCTGTGCCAATGTGTTTTGTGGAGCCGGCCGGGAATGTGCAGTCACAGAGAAAGGGGAACCC ...........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU07132.1 CAT U07132 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGGCAACAGGAGTAGTTCACTCCGCGAGAGGCCGTCCACGAGACCCCCGCGCGCAGGCATGAGCCCCGCCCCCCACGCATGAGCCCCGCCCCCCGCTGTTGCTTGGAGAGGGGCGGGACCTGGAGAGAGGCTGCTCCGTGACCCCACCATGTCCTCTCCTACCACGAGTTCCCTGGATACCCCCCTGCCTGGAAATGGCCCCCCTCAGCCTGGCGCCCCTTCTTCTTCACCCACTGTAAAGGAGGAGGGTCCGGAGCCGTGGCCCGGGGGTCCGGACCCTGATGTCCCAGGCACTGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 HSU07158.1 CAT U07158 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAAGATATCGAATTCCAAATTTGAGGGCCTCCCGGCTCTGGCGCCGGAGGGAGAGCTCAGGCCGCCATGCGCGACAGGACCCACGAGCTGAGACAGGGGGATGACAGCTCGGACGAAGAGGACAAGGAGCGGGTCGCGCTGGTGGTGCACCCGGGCACGGCACGGCTGGGGAGCCCGGACGAGGAGTTCTTCCACAAGGTCCGGACAATTCGTCAG ..................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU07223.1 CAT U07223 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGCCAGGGAGAAATCCACCCGGGTCGGAGTGGAGGGGGCATTCGAGCCAGGGAGAGGCGGGTGCAGGACCCAGACGGCGGCCAGGAGCCAGGCCCCCCACCATCATCTCCCCTGAGGAGACGTAGGAGCGGCGAGCAGCGGAGGTGATGCGTCTCCTCTCCAGCCTGTCCGGCTCGTCGGTGTCCTCCGATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACTTATATCAGTTACAGCAAGAGGCACCTCGTCCCAAGAGAATCATTTGTCCTCGGGAGGTGGAAAACAGA MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248 HSU07358.1 CAT U07358 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCATCCGGAGCGGAGCTGCAGCAGCGCCGCCTTTTGTGCTGCGGCCGCGGAGCCCCCGAGGGCCCAGTGTTCACCATCATACCAGGGGCCAGAGGCGATGGCTTGCCTCCATGAGACCCGAACACCCTCTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGACTGCACTCCCGAGAAGGACCTGACGCCTACCCATGTCCTGCAGCTA ..................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 291 HSU07361.1 CAT U07361 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCTAGTCCCGCCCCTGCGTGCGGCGCTTCTCCCAGGCCCCACCTTCCATCCAGTGCCCTGGACCCTCGGCTGGGTAGCGCCACCAGAGCGACCAAACGTCCCGCGCCTTCCAGGCCGCACTCCAGAGCCAAAAGAGCTCCATGGCGGCGGCGGCCAAGCCCAACAACCTTTCCCTGGTGGTGCACGGACCGGGGGACTTGCGCCTGGAGAACTATCCTATCCCTGAACCAGGCCCAAATGAGGTCTTGCTGAGGATGCATTCTGTTGGAATCTGTGGCTCAGATGTCCAC .............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU07559.1 CAT U07559 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAGCAGCGGCTCTTTCAGCATTGGCAACCCCAGGGGCCAATATTTCCCACTTAGCCACAGCTCCAGCATCCTCTCTGTGGGCTGTTCACCAACTGTACAACCACCATTTCACTGTGGACATTACTCCCTCTTACAGATATGGGAGACATGGGAGATCCACCAAAAAAAAAACGTCTGATTTCCCTATGTGTTGGTTGCGGCAATCAGATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATGGCATGCGGCATGTTTGAAATGTGCGGAGTGTAATCAGTATTTGGAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 HSU07707.1 CAT U07707 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAACCGCATGATGGAAACACCATGGCTGCGGCGGCCCAGCTCTCTCTGACACAGTTATCAAGTGGGAATCCTGTATATGAAAAATACTATAGACAGGTTGATACAGGCAATACTGGAAGGGTGTTGGCTTCTGATGCTGCTGCTTTCCTGAAAAAATCAGGGCTTCCAGAC .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU07856.1 CAT U07856 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCTGGCGCCCAACGTGGGGCCCAAAAGAATCTGGTGAGGAAACGCTCAAGCATGTGAAACAGAGGACCAACGAACAAAGGACTCCCAAGGACATAAAAGTTTTAACCTCTACAGGTAAGCGGGGCGCCCAGAGAAAGCTAGGGACACAATGGGAAAAACTGAAAGTAAGTACACCACGTATTTGAGCTTCCTACGGCAGCTCTTCAAGCATGCATGGTGGGGTAAAAGTTGATACGGAAAATCTTATGGATTTGTTTCATGCTATGGAACAATTTTGCCCTTGGTTCCCAAAACAGGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU07856.3 CAT U07856 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCTCAGCTTCTAATAACATAACTGCTTAGCTAGAATAAATTAACATACCCCCAGTGGGGTTCCTCATTAATAACATATAGTAAACTAAGATGCCAAGTAACACTACAGGTCACTCTTTTACTAAAAAAAAAAGTTACTAATTATACTCATGTTTGTCTTCTGTTATTTACTAATCCTAGAATACAAAGCCAAAATAAAAACAGTGACCTCCTCGCCTAACAAACCTGTGGCTACAACAGCCCAAAATTATACCTATTGGGCATGTGTCCCATTCCTGCCTTTAATTAGGCCTGTCACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 HSU07857.1 CAT U07857 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGCGAGCCAGCGTCGCCGCGATGGTGTTGTTGGAGAGCGAGCAGTTCCTGACGGAGCTGACCAGACTTTTCCAGAAGTGCCGGACGTCGGGCAGCGTCTATATCACCTTGAAGAAGTATGACGGTCGAACCAAACCCATTCCAAAGAAGGGTACTGTGGAGGGCTTTGAG .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237 HSU07969.1 CAT U07969 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGTCTCGACCACTGAATGGAAGAAAAGGACTTTTAACCACCATTTTGTGACTTACAGAAAGGAATTTGAATAAAGAAAACTATGATACTTCAGGCCCATCTTCACTCCCTGTGTCTTCTTATGCTTTATTTGGCAACTGGATATGGCCAAGAGGGGAAGTTTAGTGGACCCCTGAAACCCATGACATTTTCTATTTATGAAGGCCAAGAACCGAGTCAAATTATATTCCAG .......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU08015.1 CAT U08015 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACACGCCCCTCGATGACTTTCCTCCGGGGCGCGCGGCGCTGAGCCCGGGGCGAGGGCTGTCTTCCCGGAGACCCGACCCCGGCAGCGCGGGGCGGCCACTTCTCCTGTGCCTCCGCCCGCTGCTCCACTCCCCGCCGCCGCCGCGCGGATGCCAAGCACCAGCTTTCCAGTCCCTTCCAAGTTTCCACTTGGCCCTGCGGCTGCGGTCTTCGGGAGAGGAGAAACTTTGGGGCCCGCGCCGCGCGCCGGCGGCACCATGAAGTCAGCGGAGGAAGAACACTATGGCTATGCATCCTCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 267 HSU08021.1 CAT U08021 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAACTCTGGATGCTGTTAGCCTGAGACTCAGGAAGACAACTTCTGCAGGGTCACTCCCTGGCTTCTGGAGGAAAGAGAAGGAGGGCAGTGCTCCAGTGGTACAGAAGTGAGACATAATGGAATCAGGCTTCACCTCCAAGGACACCTATCTAAGCCATTTTAACCCTCGGGATTACCTAGAAAAATATTACAAGTTTGGTTCTAGGCACTCTGCAGAAAGCCAGATTCTTAAGCACCTTCTGAAAAATCTTTTCAAGATATTCTGC .....................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 HSU08092.1 CAT U08092 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACCTTGCTTCCTGCTCTGTCTTTCTCAGAAAACCAAATATGGCATCTTCCATGAGGAGCTTGTTTTCTGACCACGGGAAATATGTTGAATCTTTCCGGAGGTTTCTCAACCATTCCACGGAACACCAGTGCATGCAGGAATTCATGGACAAGAAGCTGCCAGGCATAATAGGAAGGATTGGAGACACA .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU08853.1 CAT U08853 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTCCAGCATAACAGAAGCAGTGCCTAGTGAGAGTGAGCCCCCTGCTCTTCAAAACAACCTCTTGTCTCCTCTTCTGACCGGGACAGAGTCACCATTTGATTTGGAACAGCAGTGGCAAGATCTCATGTCCATCATGGAAATGCAGGCCATGGAAGTGAACACATCAGCAAGTGAAATCCTGTACAGTGCCCCTCCTGGAGACCCACTGAGCACCAACTACAGCCTTGCCCCCAACACTCCCATCAATCAGAATGTCAGCCTGCATCAGGCGTCCCTGGGGGGCTGCAGCCAGGACTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216 HSU08998.1 CAT U08998 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTAGGCTGTGTATTGGGGCGCGTGGAGGCTGCAGTCACGGTGGCGCCCGCGGGGACGGAGGAGGGAATGAGTGAAGAGGAGCAAGGCTCCGGCACTACCACGGGCTGCGGGCTGCCTAGTATAGAGCAAATGCTGGCCGCCAACCCAGGCAAGACCCCGATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGGAAGACGCCTGTGTACGACCTT ..................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09002.1 CAT U09002 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGGACAGCCAGGGGAGCGCGCTGGGGCCGCAGCATGCGGGAACCCGCTAAACCCGGTGGCTGCTGAGGCGGCCGAGATGCTCGTGCGCGCAGCGCGCCCCACTGCATCCTCGACCTTCTCGGGCTACAGGGACCGTCAGTGGCGACTATGGGCAGAGTGGGCTATTGGACCCTGCTGGTGCTGCCGGCCCTTCTGGTCTGGCGCGGTCCGGCGCCGAGCGCGGCGGCGGAGAAGGGTCCCCCCGCGCTAAATATTGCGGTGATGCTGGGTCACAGCCACGACGTGACAGAGCGCGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09086.1 CAT U09086 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCGAGTTTTTGTTCCGCTCCGCAGCGCTCTTCCCGGGCAGGAGCCGTGAGGCTCGGAGGCGGCAGCGCGGTCCCCGGCCAGGAGCAAGCGCGCCGGCGTGAGCGGCGGCGGCAAAGGCTGTGGGGAGGGGGCTTCGCAGATCCCCGAGATGCCGGAGTTCCTGGAAGACCCCTCGGTCCTGACAAAAGACAAGTTGAAGAGTGAGTTGGTCGCCAACAATGTGACGCTGCCGGCCGGGGAGCAGCGCAAAGACGTGTACGTCCAGCTCTACCTGCAGCACCTCACGGCTCGCAACCGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09116.1 CAT U09116 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 269 HSU09284.1 CAT U09284 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAGTTCAAGACAACAGAGACAAAGCTAAGATGAGGAAGTTCTGTACAGTTTAGGAAATAGAGGCTTTCAAAGATAATTCGCAGTGATGTGAAACTGGCCTCCCAAGCCCTGATAACAACATGGCCAACGCCCTGGCCAGCGCCACTTGCGAGCGCTGCAAGGGCGGCTTTGCGCCCGCTGAGAAGATCGTGAACAGTAATGGGGAGCTGTACCATGAGCAGTGTTTCGTGTGCGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTC .......................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09412.1 CAT U09412 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTTCTATAGCAGTGTCACATGTTAATACTTCCAAGGCAGGTTTGCCCGCACAGACGGCTCTCCCTTGTGACATATGTGGCCCCATCTTGAAAGATATTTTGCACCTGGATGAACACCAGGGTACACACCATGGACTGAAACTTCACACATGTGGGGCATGTGGGAGACAATTCTGGTTCAGTGCAACCTTCATCAGTACCAGAAGTGTTACAGTATAGAGCAACCCTTAAGAAGGGATAAAAGTGAGGCCTCAATTGTGAAGAACTGCACAGTTAGCAAAGAACCTCATCCGTCAGAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSU09413.1 CAT U09413 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAAAGGGAAAACATAAGTCTGAACCCTGATCTCCCACATCAACCAATGACTCCTGAAAGACAAAGCCCCCACACATGGGGAACACGTGGAAAAAGGGAGAAGCCAGACCTAAATGTTTTACAGAAAACTGTGTAAAAGAGAAACCCTACAAATGTCAGGAATGCGGAAAGGCCTTTAGTCACAGCTCAGCACTTATCGAACACCACCGGACGCACACAGGAGAG ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 290 HSU09414.1 CAT U09414 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAAAGGCCTTGCACAACATCAGAGAGTTCATACTGGAGAGAACCTTACACATTTCACGAGTATGGAAAGACCTTTGCTCAAAATTCAGCCCTTGTAATGCATAAGGCAATTCATACTGGAAAGAAACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTAGAAAAGCACACCTTGCATGTCATCATAGACTTCATACTGTCTAAGGTTTCTAATCAACAATCAAACCTTGCACAACATCAGAGAGTTTATACTGGAGAGAAACCTTACAAGTGTAATGAGTGGGGC ............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 HSU09466.1 CAT U09466 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GACACAGGGATCCCGGGGAGCGGCCCCAGACTCGTAAATTATGGCCGCATCTCCGCACACTCTCTCCTCACGCCTCCTGACAGGTTGCGTAGGAGGCTCTGTCTGGTATCTTGAAAGAAGAACTATACAGGACTCCCCTCACAAGTTCTTACATCTTCTCAGGAATGTCAATAAGCAGTGGATTACATTT ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09510.1 CAT U09510 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCCAGTGCTGCTTAGAGGTGCTCGCGCCGCTCTGCTGCTGCTGCTGCCGCCCCGGCTCTTAGCCCGACCCTCGCTCCTGCTCCGCCGGTCCCTCAGCGCGGCCTCCTGCGCCCCGATCTCCTTGCCCGCCGCCGCCTCCCGGAGCAGCATGGACGGCGCGGGGGCTGAGGAGGTGCTGGCTCCTCTGAGGCTAGCAGTGCGCCAGCAGGGAGATCTTGTGCGAAAACTCAAAGAAGATAAAGCACCCCAAGTAGACGTAGACAAAGCAGTGGCTGAGCTCAAAGCCCGCAAGAGGGTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSU09550.1 CAT U09550 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGACCATTGAGATGTGGAAGCTGTTGCTGTGGGTTGGGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTC ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09584.1 CAT U09584 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACCCGATCGGAAGCGGATCCTTTACCAGGGCCATAGGCCAGTGACTAGGCCGGGCCTGGACCTCCCATCGGGGCCGGACTAGGACGAGGCCCCGGGGAGGCCCCTGGCCTACCAGACCCTTTTCTCAGGCCGACAGCCGCCAGGAAGATGCAACGTGCCCTGCCAGGCGCCCGCCAGCACTTGGGGGCCATTCTGGCCAGCGCCAGCGTGGTGGTGAAGGCTCTGTGTGCGGCGGTACTATTCCTCTACCTGCTCTCCTTCGCCGTGGACACAGGCTGCCTGGCGGTCACCCCGGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 214 HSU09770.1 CAT U09770 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAGTCTCGCACTGTAGCCCGTGCCGCCCCAGCCGCTGCCGCCTGCACCGGACCCGGAGCCGCCATGCCCAAGTGTCCCAAGTGCAACAAGGAGGTGTACTTCGCCGAGAGGGTGACCTCTCTGGGCAAGGACTGGCATCGGCCCTGCCTGAAGTGCGAGAAATGTGGGAAGACGCTGACCTCTGGGGGCCACGCTGAGCACGAAGGCAAACCC ................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09825.1 CAT U09825 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACAGAGAATATACTGACGGCATAAAAGGGCAGAACCATAGCAGGGTGCGCGCTGCTGTAGTTGCCTTCCATGGATCTATAGGAGAGCAAGTCCTCCAGGAGAAGAAGTCCTCACCAGTGAACGGAGACCTCTCTGAACTAAGGATACCATGGCCACGTCAGCCCCACTACGGAGCCTGGAAGAGGAGGTGACCTGCTCCATCTGTCTTGATTACCTGCGGGACCCTGTGACCATTGACTGTGGCCACGTCTTCTGCCGCAGCTGCACCACAGACGTCCGCCCCATCTCAGGGAGCCGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 187 HSU09850.1 CAT U09850 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTAAAGGTTAGCCCAAATAAATCGAGATTCTCAGGGAATGACAGAGTTTCCTGGAGGAGGGATGGAGGCGCAACATGTTACGCTGTGCTTGACAGAGGCAGTCACCGTGGCAGATGGTGACAACTTAGAAAATATGGAAGGCGTAAGCTTGCAAGCAGTAACACTTGCAGATGGTTCTACTGCTTAC .....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU09955.1 CAT U09955 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGGCTGGACTTCAACTCCTGGGTTTAGGTGATCCTCCCACTTCACCCTTCTGAGTAGCTGCACAGAAAACTTACTGAAGGCATATAATTGTAATTATATTATCATACATAAAGAAATTAGGCTTTCTTGCTGCGTCTACTGCGAGAATGAAGACTATTCCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGACATTACTCTGAAGGGACGCACAGTTATCGTGAAGGGCCCAGAGGAACCCTGAGGAGGGACTTCAATCACATCAATGTAGAACTCAGCCTTCTTGGAAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU10099.1 CAT U10099 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCGTGGGACTTTACCAGATCGGTTTGTAATAACACCTCGAAGACGCTATCCGATCCATCAGGCCCAGTATTCCTGTCCGGGGGTACTTCCCACAGTGTGCTGGAATGGTTATCACAAGAAGGCTGTGCTGTCCCCTCGCAACTCCAGGATGGTGTGTAGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATTTTCGCGTTCTGCGATACCAGAGCAGATAATCAGCTCAACACTGTCCTCACCATCAAGTAATGCCCCAGACCCATGTGCAAAGGAGACTGTACTGAGTGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198 HSU10117.1 CAT U10117 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAACCCGTGGTCCTCCGCTTCATGATTTTCTGCCGTCTCTTGGCAAAAATGGCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGGTGCAGAGGCAGATCAAATCATTGAATATCTTAAGCAGCAAGTTTCTCTACTTAAGGAGAAAGCAATTTTGCAGGCAACTTTGAGGGAAGAGAAGAAACTTCGAGTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 203 HSU10301.1 CAT U10301 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGACGACTCCTGAGTTGCGCCCATGCTCTTGTCAGCTTCGTTTTAGGCGTAGCATGGCCAGGCAGAAGAAAATGGGGCAAAGCGTGCTCCGGGCGGTCTTCTTTTTAGTCCTGGGGCTTTTGGGTCATTCTCACGGAGGATTCCCCAACACCATCAGCATAGGTGGACTTTTCATGAGAAACACAGTGCAGGAGCACAGCGCT .....................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU10307.1 CAT U10307 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGTTTCTAGATAGTGCCTGAAAAAGCAGAGACCATGGTGTCAGGCGTCACCACTTGGGCCTATAAAAGCTGCCACAAGACGCCAAGGCCACAAGCCACCCAGCCTATGCATCCGCTCCTCAATCCTCTCCTGTTGGCACTGGGCCTCATGGCGCTTTTGTTGACCACGGTCATTGCTCTCACTTGCCTTGGCGGCTTTGCCTCCCCAGGCCCTGTGCCTCCCTCTACAGCCCTCAGGGAGCTCATTGAGGAGCTGGTCAACATCACCCAGAACCAGAAGCGTCCGCTCTGCAATGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 189 HSU10323.1 CAT U10323 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGTTGGTGCGGCCTCCATTGTTCGTGTTTTAAGGCGCCATGAGGGGTGACAGAGGCCGTGGTCGTGGTGGGCGCTTTGGTTCCAGAGGAGGCCCAGGAGGAGGGTTCAGGCCCTTTGTACCACATATCCCATTTGACTTCTATTTGTGTGAAATGGCCTTTCCCCGGGTCAAGCCAGCACCTGATGAA .......................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU10692.1 CAT U10692 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGTCCTCCCCTGAGTCTCAGGGTTCCTCCTTTTCCCTGACCATCAGCAACAACACTCTATGGAGCCAATCCAGTGAGGGCACCAGCAGCCGGGAAGAGGAGGGGCCAACCACCTAGACACACCCCGCTCACCTGGCGTCCTTGTTCCAATGGGAAGGTGGCTGAGTTGGTTCGCTTCCTGCTGCACAAGTATCGAGTCAAGGAGCTGGTCACAAAGGCAGAAATGCTGGACAGTGTCATCAAAAATTACAAGCACTAGTTTCCTTGTGATCTATGGCAAAGCCTCAGAGTGCATGCAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 272 HSU10860.1 CAT U10860 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGCCGGCTGCTCCTCGACCAGGCCTCCTTCTCAACCTCAGCCCGCGGCGCCGACCCTTCCGGCACCCTCCCGCCCCGTCTCGTACTGTCGCCGTCACCGCCGCGGCTCCGGCCCTGGCCCCGATGGCTCTGTGCAACGGAGACTCCAAGCTGGAGAATGCTGGAGGAGACCTTAAGGATGGCCACCACCACTATGAAGGAGCTGTTGTCATTCTGGATGCTGGTGCTCAGTACGGGAAAGTCATAGACCGAAGAGTGAGGGAACTGTTCGTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 161 HSU11037.1 CAT U11037 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTCCATTTCTATGGGTTTGGACACCGATGTAGATTATGAAACTGCATTTATTCATTACCGTCTGGCTTCTGAGCAGCAACACAGTGCACAAGCTATGTTTAATCTGGGATATATGCATGAGAAAGGACTGGGCATTAAACAGGATATTCACCTTGCGAAA ...........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 284 HSU11050.1 CAT U11050 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCACGAGTAGGGGTGGCGGGTCAGTGCTGCTCGGGGGCTTCTCCATCCAGGTCCCTGGAGTTCCTGGTCCCTGGAGCTCCGCACTTGGCGCGCAACCTGCGTGAGGCAGCGCGACTCTGGCGACTGGCCGGCCATGCCTTCCCGGGCTGAGGACTATGAAGTGTTGTACACCATTGGCACAGGCTCCTACGGCCGCTGCCAGAAGATCCGGAGGAAGAGTGATGGCAAGATATTAGTTTGGAAAGAACTTGACTATGGCTCCATGACAGAAGCTGAGAAACAG ......................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 295 HSU11090.1 CAT U11090 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCAGGAACTGGAGCAGCAAAGAGAAGAACAAAAGCGCAGAGAGAAGGAAGCGGAGGAGAGGCAGCGAGCGGAGGAAAGCAGGCTCTGTGCTCCTTGAAGCAAGCGCTCCAGAGGCTCCGGAAGCCACGGCTGGATTGGAGACAAGATGGGATCCTCAGAGGACCAGGCCTATCGCCTCCTTAATGACTACGCCAACGGCTTCATGGTGTCCCAGGTTCTCTTCGCCGCCTGCGAGCTGGGCGTGTTTGACCTTCTCGCCGAGGCCCCAGGGCCCCTGGACGTGGCGGCAGTGGCT .................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSU11293.1 CAT U11293 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTACACTAAGTGCCTCTTTGCATAGCACCAGTCCCCACCCGCACGCTCTCTGGACCACTACAGCTGGACGGGCAATGGCGGGTCGGGGAGGCGCACGACGACCCAATGGACCAGCTGCTGGGAACAAGATCTGTCAATTTAAGCTGGTTCTGCTGGGGGAGTCTGCGGTAGGCAAATCCAGCCTCGTCCTCCGCTTTGTCAAGGGACAGTTTCACGAGTACCAG ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU11700.1 CAT U11700 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTTGCTTTAGAGCCGAGCCGCGCCGCGCCGATGCCCTCACACTCTGCGCCTCCTCTCCCGGGACTTTAACACCACGCTCTCCTCCACCGACCAGGTGACCTTTTGCTCTGAGCCAGATCAGAGAAGAATTCGGTGTCCGTGCGGGACGATGCCTGAGCAGGAGAGACAGATCACAGCCAGAGAAGGGGCCAGTCGGAAAATCTTATCTAAGCTTTCTTTGCCTACCCGTGCCTGGGAACCAGCAATGAAGAAGAGTTTTGCTTTTGACAATGTTGGCTATGAAGGTGGTCTGGATGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSU11732.1 CAT U11732 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCTGATCTCTCTCGCTGTGAGACATGTCTGAGACTCCTGCTCAGTGTAGCATTAAGCAGGAACGAATTTCATATACACCTCCAGAGAGCCCAGTGCCGAGTTACGCTTCCTCGACGCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGGAAGACTCGATCCGCCTG ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSU11870.1 CAT U11870 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TAGATCAAACCATTGCTGAAACTGAAGAGGACATGTCAAATATTACAGATCCACAGATGTGGGATTTTGATGATCTAAATTTCACTGGCATGCCACCTGCAGATGAAGATTACAGCCCCTGTATGCTAGAAACTGAGACACTCAACAAGTATGTTGTGATCATCGCCTATGCCCTAGTGTTC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU12128.1 CAT U12128 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGTGTGAGGATGTTATTTACGCTCGAGTTTCTGTTCGGACTGTGCTGGATGCTTGCAGTGCCCACATTAGGAATAGCAATTGTGCACCCTCATTTTCCTACGTGAAACACTTGGTAAAACTGGTTCTGGGAAATCTTTCTGGGGTAATATGCACGTGTCACTAGCTGAGGCCCTGGAGGTTCGGGGTGGACCACTTCAGGAGGAAGAAATATGGGCTGTATTAAATCAAAGTGCTGAAAGTCTCCAAGAATTATTCAGAAAAGTAAGCCTAGCTGATCCTGCTGCCCTTGGCTTCATC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSU12134.1 CAT U12134 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGCCCGAGGCGCAGGTCAACCAGAATCAAGATGTCTGGGACTGAGGAAGCAATTCTTGGAGGACGTGACAGCCATCCTGCTGCTGGCGGCGGCTCAGTGTTATGCTTTGGACAGTGCCAGTACACAGCAGAAGAGTACCAGGCCATCCAGAAGGCCCTGAGGCAGAGGCTGGGCCCAGAA ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSU12170.1 CAT U12170 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTTTAGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACGTTACAAATTATAATACTGTGGTAGAAACAAATTCAGATTCAGATGATGAAGACAAACTGCATATTGTGGAAGAAGAAAGTGTTACAGATGCA ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU12206.1 CAT U12206 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGACTCTTTGTCTGAGAACTCTATATACGCAAACCTTTGGATGGCCACTAAATTTGTCACACAGTATGGTAACACGGTTGACTGAACCACAGCCATGAAAGTGAGCTTCAGCTCTCTGCTGTTGCACCATAGTCACTTGCCAACATAGATGGAACCGGCATCAGCTCATCTTCTCCTCAATGACATGATCGCGGGCCAGCATTGCCTGGAGGTGACTATATTCATCTGCTTCTCTACCTCGTTCTGTAGCTCCTTTAGCTTCTCAGCTTCTTCCTCCATCTCCCTGACGCTTGATAGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226 HSU12387.1 CAT U12387 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGGCAATGGCCGGCAACCAGCTGTAAGCGAGGCACGGAAGACATATGCTTGTGAGACAAAGGTGTCTCTGAAACTATGGATGGTACAAGAACTTCACTTGACATTGAAGAGTACTCGGATACTGAGGTACAGAAAAACCAAGTACTAACTCTGGAAGAATGGCAAGACAAGTGGGTGAACGGCAAGACTGCTTTTCATCAGGAACAAGGACATCAGCTATTAAAG ............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 262 HSU12596.1 CAT U12596 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCCGGCGGCACGGACGAGAAGCCGAGCGGCAAGGGGCGGCGGGATGCCGGGGACAAGGACAAAGAACTGGAGCTGTCTGAAGAGGATAAACAGCTTCAAGATGAACTGGTGATGCTCGTGGAACGACTAGGGGAGAAGGATACATCCCTGTATCGACCAGCGCTGGAGGAATTGCGAAGGCAGATTCGTTCTTCTACAACTTCCATGACTTCAGTGCCCAAGCCTCTCAAATTTCTGCGTCCACACTATGGCAAACTGAAG ................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 162 HSU12685.1 CAT U12685 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACGATTCCATAATGTACCACAACAGTAGTCAGAAGCGGCACTGGACCTTCTCCAGCGAGGAGCAGCTGGCAAGACTGCGGGCTGACGCCAACCGCAAATTCAGATGCAAAGCCGTGGCCAACGGGAAGGTTCTTCCGAATGATCCAGTCTTTCTTGAGCCT ............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSU12707.1 CAT U12707 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCCTCGCCAGAGAAGACAAGGGCAGAAAGCACCATGAGTGGGGGCCCAATGGGAGGAAGGCCCGGGGGCCGAGGAGCACCAGCGGTTCAGCAGAACATACCCTCCACCCTCCTCCAGGACCACGAGAACCAGCGACTCTTTGAGATGCTTGGACGAAAATGCTTGACGCTGGCCACTGCAGTT ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 165 HSU12778.1 CAT U12778 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATTCCTGCGCCGAGGATGGAGGGCCTGGCAGTGCGGTTGCTGCGCGGCAGCAGGCTGCTAAGAAGAAATTTCCTGACTTGTTTGTCTTCTTGGAAGATTCCTCCTCATGTCTCAAAATCTTCCCAGTCAGAAGCTCTACTCAATATAACAAATAATGGAATACAC ...............iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238 HSU13022.1 CAT U13022 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGAGGGAGGGAACGATTTAAGGAGCGAATACTACTGGTAAACTAATGGAAGAAATCTGCTGCACCACTGGATATTGGGAGTGTGTGGCATGCATCCTCATCATCAGGAAACTCTAAAAAAGAACCGAGTGGTGCTAGCCAAACAGCTGTTGTTGAGCGAATTGTTAGAACATCTTCTGGAGAAGGACATCATCACCTTGGAAATGAGGGAGCTCATCCAGGCCAAAGTGGGCAGTTTC ........................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU13044.1 CAT U13044 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTTCTAGTCGCGGGAGCTGCAGGTCTTACCCGGAGAGACGCTGCACGTGGAGCCCTCGCCGCTGCCGTTCTTCAGCCGGCCCTGGAGTGCGGGCGGGGGCGACAGGGCCGATTCCGGAGTGGGACTGATCCTTTGAAATACTCCAGCCATGACTAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAGATTGATGGAACAGAGAAAGCAGAGTGCACAGAAGAAAGCATTGTAGAACAAACCTACGCGCCAGCTGAATGTGTAAGCCAGGCCATAGACATCAATGAACCAATAGGCAAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSU13261.1 CAT U13261 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCTGTCTCATTCCCTCGCGCTCTCTCGGGCAACATGGCGGGTGTGGAGGAGGTAGCGGCCTCCGGGAGCCACCTGAATGGCGACCTGGATCCAGACGACAGGGAAGAAGGAGCTGCCTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGAAGAAGAAGAGCAAAGGGCCTTCTGCA ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 HSU13395.1 CAT U13395 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGGCATAAAGCCAAGGTAGAAGCAATGACCCTGGACCTCGCTCTGCTCCGTAGCGTGCAGCATTTTGCTGAAGCATTCAAGGCCAAGAATGTGCCTCTTCATGTGCTT ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU13666.1 CAT U13666 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAATAATACTATGTCTGGTCCATAACCTGAAATATTTTTATCTTCACGTTCCTTATCATTCACTGAACTTTTATTTTTCTTTTAAAATTTTTTCCTTTCTTTTTAAATTTGCTTCTACAGATTTCTTCATTCTCCATTTAGCAAGGTCATGGAAGATTTGGAGGAAACATTATTTGAAGAATTTGAAAACTATTCCTATGACCTAGACTATTACTCTCTGGAGTCTGATTTGGAGGAGAAAGTCCAGCTGGGAGTTGTTCACTGGGTCTCCCTGGTGTTATATTGTTTGGCTTTTGTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230 HSU13695.1 CAT U13695 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCACGAGTGGCTGCTTGCGGCTAGTGGATGGTAATTGCCTGCCTCGCGCTAGCAGCAAGCTGCTCTGTTAAAAGCGAAAATGAAACAATTGCCTGCGGCAACAGTTCGACTCCTTTCAAGTTCTCAGATCATCACTTCGGTGGTCAGTGTTGTAAAAGAGCTTATTGAAAACTCCTTGGATGCTGGTGCCACAAGCGTAGATGTTAAACTGGAGAACTATGGATTTGAT ................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HSU13738.1 CAT U13738 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCAGGAATTCGGCACGAGGGGTGCTATTGTGAGGCGGTTGTAGAAGTTAATAAAGGTATCCATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAAGCGAATCAATGGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATAATT ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU13948.1 CAT U13948 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCGTTAGCGGCCGGGTGGAGGTGGGGAGGGAAGACGCTGAGGAGGAGGAGGAGGCGGAGGAGGCGGTGGAGGGGAGGTGGGGGGAATCAGCAAGGACATGGCTCCTGACTCCTGTGCGGAACGTGAGTGACTGAGCGGCAAAGCCCGAATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 200 HSU13989.1 CAT U13989 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGTTAGAAAGCAGGATAAAGTCGGTATTCTCGGGGAACGTGCGGGCACCATGCGTCCCCACCTGTCGCCGCCGCTGCAGCAGCTACTACTGCCGGTGCTGCTCGCCTGCGCCGCGCACTCGACTGGAGCCCTTCCCCGACTATGTGACGTGCTACAAGTGCTGTGGGAAGAGCAAGACCAGTGCCTGCAGGAACTCTCC ..................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 291 HSU14193.1 CAT U14193 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAGCTGGAGAGGTGGTCGGAGAAGTAGGAACCTCCTGCCGGGCTCGTGGCGGCTTCTGTCCGCTCCGCGGAGGGAAGCGCCTTCCCCACAGGACATCAATGCAAGCTTGAATAAGAAAAACAAATTCTTCCTCCTAAGCCATGGCATATCAGTTATACAGAAATACTACTTTGGGAAACAGTCTTCAGGAGAGCCTAGATGAGCTCATACAGTCTCAACAGATCACCCCCCAACTTGCCCTTCAAGTTCTACTTCAGTTTGATAAGGCTATAAATGCAGCACTGGCTCAG .............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU14391.1 CAT U14391 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCATTGGCTCCTGTGAGTGCTTGGGTGTTCGGGAGCCTGTTTTTGGCGGAGGGGAACCAACTTTTGAAGTTCGCCCAGAAGACTGCGTTCCAGCCCCAGTTCCCCGGCAGCGGGACCCGGCGAAGACGCGACCGCGGCGCGAGTCACCATGGGAAGCAAAGGTGTCTACCAGTACCACTGGCAAAGCCACAATGTCAAGCACAGTGGTGTGGACGACATGGTGCTACTGTCCAAGATCACAGAGAACTCCATCGTGGAGAATCTGAAGAAGAGATACATGGATGACTACATTTTTACA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSU14510.1 CAT U14510 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGCAGCACCCTGGGCCACGCCGATGACTACTGCAAACTGTGGCGCCCACGACGAGCTCGACTTCAAACTCGTCTTTGGCGAGGACGGGGCGCCGGCGCCGCCGCCCCCGGGCTCGCGGCCTGCAGATCTTGAGCCAGATGATTGTGCATCCATTTACATCTTTAATGTAGAT ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU14575.1 CAT U14575 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCGGATTTCTACCCTTACCATTGAGGAGGGAAATCTGGACATTCAAAGACCAAAGAGGAAGAGGAAGAACTCACGGGTGACATTCAGTGAGGATGATGAGATCATCAACCCAGAGGATGTGGATCCCTCAGTTGGTCGATTCAGGAACATGGTGCAAACTGCAGTGGTCCCAGTCAAGAAGAAGCGTGTGGAGGGCCCTGGCTCCCTGGGCCTGGAGGAATCAGGGAGCAGGCGCATGCAGAACTTTGCCTTCAGCGGAGGACTCTACGGGGGCCTGCCCCCCACACACAGTGAAGCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224 HSU14588.1 CAT U14588 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAAGTTGCGGGGCATAGACGAGCGCCCCGGGACGCAGCTAGCGCGACCCTGAGCCGGCGCCCGTGGTCCGGCCATGGACGACCTCGACGCCCTGCTGGCGGACTTGGAGTCTACCACCTCCCACATCTCCAAACGGCCTGTGTTCTTGTCGGAGGAGACCCCCTACTCATACCCAACTGGAAACCACACATACCAGGAGATTGCCGTGCCACCCCCCGTCCCC ..........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU14747.1 CAT U14747 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCCAGAGCTCCAGAGAAAAAGAGAGCGAGAAAGAACCACACACAGAGACGGCTTAAGCGTTTACCCGAATTAAATATATATTTTTAAAAAGAACTGTTGAGTTTTATCATTTTCGTTAAGTGACCGTGCGCAGCGCTGTAACTGCAGGATGGGGAAGCAGAATAGCAAACTGGCCCCTGAAGTGATGGAGGACCTGGTGAAGAGCACAGAGTTTAATGAGCATGAACTCAAGCAGTGGTACAAAGGATTTCTCAAGGACTGTCCAAGTGGGAGGCTAAATCTCGAGGAATTTCAGCAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSU14957.1 CAT U14957 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGGGGACATAGGAGGCGGCCATGGCGACCCCCGGCAACCTAGGGTCCTCTGTCCTGGCGAGCAAGACCAAGACCAAGAAGAAGCACTTCGTAGCGCAGAAAGTGAAGCTGTTTCGGGCCAGCGACCCGCTGCTCAGCGTCCTCATGTGGGGGGTAAACCACTCGATCAAT ......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 180 HSU14966.1 CAT U14966 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGCAGCGGACGCCGGTCTCTGTTCCGCAGATGGGGTTTGTTAAAGTTGTTAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAATTTAGAAGACGACGAGAGGGTAAAACTGATTATTATGCTCGGAAACGCTTGGTGATACAAGATAAAAATAAATACAACACACCCAAATACAGG ..............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 HSU14968.1 CAT U14968 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGTCTGGGCTGCCAACATGCCATCCAGACTGAGGAAGACCCGGAAACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGCAAGCACCGGAAGCACCCCGGCGGCCGCGGTAATGCTGGTGGTCTGCATCACCACCGGATCAACTTCGACAAATACCACCCA ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 187 HSU14970.1 CAT U14970 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCGAGTGACAGAGACGCTCAGGCTGTGTTCTCAGGATGACCGAGTGGGAGACAGCAGCACCAGCGGTGGCAGAGACCCCAGACATCAAGCTCTTTGGGAAGTGGAGCACCGATGATGTGCAGATCAATGACATTTCCCTGCAGGATTACATTGCAGTGAAGGAGAAGTATGCCAAGTACCTCCCT .....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 HSU14972.1 CAT U14972 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCTGCAGCCGCAGAGATGTTGATGCCTAAGAAGAACCGGATTGCCATCTATGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCAGACAAGAATGTGCCCAACCTTCATGTCATGAAGGCCATGCAG ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237 HSU15009.1 CAT U15009 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTTGACTCACGCCTTCGCCGTAGCATCTTTCGCAGCGGACCGAAGAGAAGAAAAGTAGGCCAGAGCCGAACTCTCTTCCTGCCAAGATGTCTATTGGTGTGCCGATTAAAGTACTGCATGAGGCCGAGGGCCACATTGTGACATGTGAGACGAACACCGGTGAGGTATATCGGGGGAAGCTCATTGAAGCAGAGGACAACATGAACTGCCAGATGTCCAACATCACAGTCACATAC .......................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU15128.1 CAT U15128 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGCCCGGGATGAGTTAGCGAGGGCAGCCGCGGGGGCCAGTTCCGACCGTGACAGGCCAAGGCGACGGCCGCCGCCCGCCCGCCCCTTCCGTGCAGAAGCAGCTGCTCCTTTCCGCGCCCGCCCGCCTGCGCTCCCGGCCCTGGAGACCATGAGGTTCCGCATCTACAAACGGAAGGTGCTAATCCTGACGCTCGTGGTGGCCGCCTGCGGCTTCGTCCTCTGGAGCAGCAATGGGCGACAAAGGAAGAACGAGGCCCTCGCCCCACCGTTGCTGGACGCCGAACCCGCGCGGGGTGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 160 HSU15172.1 CAT U15172 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGTCCCCAACATGGCGGCTCCCCAAGACGTCCACGTCCGGATCTGTAACCAAGAGATTGTCAAATTTGACCTGGAGGTGAAGGCGCTTATTCAGGATATCCGTGATTGTTCAGGACCCTTAAGTGCTCTTACTGAACTGAATACTAAAGTAAAAGAGAAA ..........iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU15173.1 CAT U15173 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCTCGGCCCTGCTTTTTGCGACCTGCCGTCAGCCCCACGTCGCCGGCCTGGAGGGGCGAAGAGGACGAGGGGCGCAAGGCTTCCTCCGGGGACATTGGCTCCCTGGATTATCAAGCAGTTTGTAGTTGACATTGAATCCAGGCTGAGGATGGAAGGTGTGGAACTTAAAGAAGAATGGCAAGATGAAGATTTTCCGATACCTTTACCAGAAGATGATAGTATTGAAGCAGATATACTAGCTATAACTGGACCAGAGGACCAGCCTGGCTCACTAGAAGTTAATGGAAATAAAGTGAGA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 HSU15174.1 CAT U15174 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCACCGCCCGCAGCTGAAGCACATCCGCAGCCCGGCGCGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCCGAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGGGCTCCTGGGTAGAACTGCACTTCAGCAATAATGGGAACGGGGGCAGCGTTCCAGCCTCGGTTTCTATTTATAATGGAGACATGGAAAAAATACTGCTGGACGCA .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU15460.1 CAT U15460 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTCAGAGGTGGCTACAGGGCAGGCAGAGGAGGCACCTGTAGGGGGTGGTGGGCTGGTGGCCCAGGAGAAGTCAGGAAGGGAGCCCAGCTGGTGACAAGAGAGCCCAGAGGTGCCTGGGGCTGAGTGTGAGAGCCCGGAAGATTTCAGCCATGCCTCACAGCTCCGACAGCAGTGACTCCAGCTTCAGCCGCTCTCCTCCCCCTGGCAAACAGGACTCATCTGATGATGTGAGAAGAGTTCAGAGGAGGGAGAAAAATCGTATTGCCGCCCAGAAGAGCCGACAGAGGCAGACACAGAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSU15552.1 CAT U15552 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCACGAGCGAGGGAGCCGGAAAGATGGTGGTTACCAGATCTGCACGGGCTAAGGCCAGCATCCAAGCCGCGTCGGCTGAAAGTTCCGGGCAAAAGAGTTTTGCTGCTAATGGGATTCAAGCGCATCCAGAAAGTAGTACTGGATCTGATGCCCGAACTACTGATGAATCACAG ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSU15590.1 CAT U15590 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CATGCAGCATCAGCATCTTATAGTAGTTGAACATGTCGCCATCCAGGCCGCCCATCACATCCACAAACTCTGTGGTCAGCTTAAAGGCTGACGTCTCAAAGCCCAGATTTCGGGGTGAGCTGGAGAGGATGAAGCCAAAGTCGATGTGGATGATGTGGCCTTCTGCGTCCAAAAGGATATTC ................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 272 HSU15655.1 CAT U15655 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTGAGAGGCGAGGCCGGGTGAGGCGGCGAGGGCGGCCCGACGGGCGCGGGACGGGACGGGGCAGCGAGGGCGCCGGGAGCCGCGGCCCGGAATCGGGGCGCTTCGCCCCGGGCCCCCCAGCATGAAGACCCCGGCGGACACAGGGTTTGCCTTCCCGGATTGGGCCTACAAGCCAGAGTCGTCCCCTGGCTCAAGGCAGATCCAGCTGTGGCACTTTATCCTGGAGCTGCTGCGGAAGGAGGAGTACCAGGGCGTCATTGCCTGGCAGGGG ..........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 281 HSU15782.1 CAT U15782 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGATTGGTGTTGGCGGTCTGGCTCAGCTGGGCAGGGGGTAACTTTACTGATTTGGGGGTGGTTTTTAGTTTAATTTTTCTTTTCTAGCTTCCCATCGACGGTCAGTGCGCACGTTGTAATCAGCTGAGGCCATGTCAGGAGACGGAGCCACGGAGCAGGCAGCTGAGTATGTCCCAGAGAAGGTGAAGAAAGCGGAAAAGAAATTAGAAGAGAATCCATATGACCTTGATGCTTGGAGCATTCTCATTCGAGAGGCACAGAATCAACCTATAGACAAAGCA ...................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU15979.1 CAT U15979 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCAGCCCGGTGCAGCCCGGTGCAGCCCTGGCTTTCCCCTCGCTGCGGCCCGTGCCCCCTTTCGCGTCCGCAACCAGAAGCCCAGTGCGGCGCCAGGAGCCGGACCCGCGCCCGCACCGCTCCCGGGACCGCGACCCCGGCCGCCCAGAGATGACCGCGACCGAAGCCCTCCTGCGCGTCCTCTTGCTCCTGCTGGCTTTCGGCCACAGCACCTATGGGGCTGAATGCTTCCCGGCCTGCAACCCCCAAAATGGATTCTGCGAGGATGACAATGTTTGCAGGTGCCAGCCTGGCTGGCAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 209 HSU16028.1 CAT U16028 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGGCAGTTTATTATTTTTAGAAGAGGCATATGAAGTGTGTAGGAGTAAGGGGTCCCAATGTCTACAGCTTATTTTCAAATGATGCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTCTCCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCTAATGGACAAACC ...........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU16031.1 CAT U16031 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGTGGTGGTGGTGGAAGGGGGGAGGTGCTAGCAGGGCCAGCCTTGAACTCGCTGGACAGAGCTACAGACCTATGGGGCCTGGAAGTGCCCGCTGAGAAAGGGAGAAGACAGCAGAGGGGTTGCCGAGGCAACCTCCAAGTCCCAGATCATGTCTCTGTGGGGTCTGGTCTCCAAGATGCCCCCAGAAAAAGTGCAGCGGCTCTATGTCGACTTTCCCCAACACCTGCGGCATCTTCTGGGTGACTGGCTGGAGAGCCAGCCCTGGGAGTTCCTGGTCGGCTCCGACGCCTTCTGCTGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 168 HSU16127.1 CAT U16127 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTCGGCGGCGCCCAACGATGACCGCTCCCTGGCGGCGCCTCCGGAGTCTGGTTTGGGAATACTGGGCCGGGCTCCTCGTGTGCGCCTTCTGGATCCCGGACTCGCGCGGGATGCCCCACGTCATCCGGATCGGAGGAATCTTCGAGTATGCGGACGGCCCCAACGCC ..................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU16258.1 CAT U16258 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGATGCCGGACTCGAACTCGTCCGCTTCTCGCCATTGGGCTTCACGATCTTGGCGCTCGAACTGAACATGGCTTCTCCTTTGAGAAGAGCTTGGCTATTGTGGATGAGGAGCTGGAGGGGACACTGGCGCAGGGAGAGCTGAATGAGATGAGGACCCGCCTCTATCTCAACCTGGGCCTCACCTTTGAGAGCCTGCAGCAGACAGCCCTGTGCAACGATTACTTCAGGAAGAGCATCTTCCTTGCGGACGAGAACCACCTTTACGAGGACCTATTCCGCGCCCGCTACAACCTGGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU16261.1 CAT U16261 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGCCTCCAGGCAGCCAGCCCTCAAGCATCACTTACAGGACCAGAGGGACAAGACATGACTGTGATGAGGAGCTGCTTTCGCCAATTTAACACCAAGAAGAATTGAGGCTGCTTGGGAGGAAGGCCAGGAGGAACACGAGACTGAGAGATGAATTTTCAACAGAGGCTGCAAAGCCTGTGGACTTTAGCCAGACCCTTCTGCCCTCCTTTGCTGGCGACAGCCTCTCAAATGCAGATGGTTGTGCTCCCTTGCCTGGGTTTTACCCTGCTTCTCTGGAGCCAGGTATCAGGGGCCCAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU16861.1 CAT U16861 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCACAAGGCTCCCCAGAGACACCCATCTCTCCTCATTTTTTTGGTGTGTGTGTCTTCACCGAACATTCAAAACTGTTTCTCCAAAGCGTTTTGCAAAAACTCAGACTGTTTTCCAAAGCCAGAAGCACTGGAGTCCCCAGCAGAAGCAATGGGCAGTGTGCGAACCAATCGCTACAGCATCGTCTCTTCAGAAGAAGACGGTATGAAGTTGGCCACCATGGCAGTTGCAAATGGCTTTGGGAACGGGAAGAGTAAAGTCCACACCCGACAACAGTGCAGGAGCCGCTTTGTGAAGAAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 290 HSU16957.1 CAT U16957 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGATCCGCGCAGAATTCAAAGCATTCTGCAGCCTGAATTTTGAAGGAGTGTGTTTAGGCACTAAGCAAGCTGATTTATGATAACTGCTTTAAACTTCAACAACCAAAGGCATAAGAACTAGGAGCTGCTGACATTTCAATATGAAGGGCAACTCCACCCTTGCCACTACTAGCAAAAACATTACCAGCGGTCTTCACTTCGGGCTTGTGAACATCTCTGGCAACAATGAGTCTACCTTGAACTGTTCACAGAAACCATCAGATAAGCATTTAGATGCAATTCCTATTCTT ............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 HSU16997.1 CAT U16997 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCCTGGGCCCTGCTCCCTGCCCTCCTGGGCAGCCAGGGCAGCCAGGACGGCACCAAGGGAGCTGCCCCATGGACAGGGCCCCACAGAGACAGCACCGAGCCTCACGGGAGCTGCTGGCTGCAAAGAAGACCCACACCTCACAAATTGAAGTGATCCCTTGCAAAATCTGTGGGGACAAGTCGTCTGGGATCCACTACGGGGTTATCACCTGTGAGGGG .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU17032.1 CAT U17032 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTGCCGCTGTTTCTGCACAGAAATGAGGGAAATACAAAGAACCAAATACAGTTCTAAATTTGGGATCTGTATTTTGAGATGATTTTATTTTCAGAATGAGAAGCATATCTGGTTACCTTTATGAATGTAGAGACATGAGAAGAGAGTTATGATGGCAAAAAACAAAGAGCCTCGTCCCCCATCCTATACCATCAGTATAGTTGGACTCTCTGGGACTGAAAAAGACAAAGGTAACTGTGGAGTTGGAAAGTCTTGTTTGTGCAATAGATTTGTACGCTCAAAAGCAGATGAATATTAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 166 HSU17278.1 CAT U17278 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAAGCCAACGGGCGGATGGTTATTCCCGGAGGTATTGATGTCAACACGTACCTGCAGAAGCCCTCCCAGGGGATGACTGCGGCTGATGACTTCTTCCAAGGGACCAGGGCGGCACTGGTGGGCGGGACCACGATGATCATTGACCATGTTGTTCCTGAACCTGGG ................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 HSU17279.1 CAT U17279 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAAGTCCCCTTCCCGGCAGTTTTTGCCTTAAAGCTGCCCTCTTGAAATTAATTTTTTCCCAGGAGAGAGATGTCTTATCAGGGGAAGAAAAATATTCCACGCATCACGAGCGATCGTCTTCTGATCAAAGGAGGTAAAATTGTTAATGATGACCAGTCGTTCTATGCAGACATATACATGGAAGATGGGTTGATCAAGCAAATAGGAGAAAATCTGATT .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225 HSU17474.1 CAT U17474 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATTCCTGGGGAGGAAAGGATTACAAAGGAGCATCCCTGATTCTCAGCGATGTGCAACGGAAGGTCCTCTATGTGATGGAGCTGCTGCAAAACCAGGAGGAGGGCCACGCCTGCTTCAGCTCCATCTCGGAGTTCCTGCTCACCCACCCTGTGCTGAGCTTTGGTATCCAGGTTGTGAGTCGCTGCCGGCTACGGCACACTGAGGTGCTGCCTGCCGAAGAGGAA ...........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU17714.1 CAT U17714 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCCAGCTCTCTTGATGAGAAGGTCAGAGGTACACTGGTTGTATTATTGCGACATCCATAAGGTGATCTAGGTTGCTTTTCCTTCAGCAAGGGCTTTATTTATCAGAAGGACATTACGCTTGACCTCCAAATTTGGCTGACAATTTACTGATGAGATTCATAACCTTTGGGTTGCTCTGGTATTTTGACATATTTTGCTGGGTTCTGAGCCACATCCTGGAAAGCCACCATAACTTCTGGATCCTGCATGGCTGCAAGAACCTCTGGATCACTAAGAATTTCATTGAGTCCAGGCATTCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 213 HSU17894.1 CAT U17894 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCACCAGCGCCCCGGGCCTCCATCTCCCAGCTAACGTGTCCCGTTTTCCTCCCCTGACAGCCATGCTGGTCGTTCAGATGCCTTTCTCCTTTCCCATGGCCCACTTCATCCTCTTTGTCTTTACGGTTTCCACTATATTTCACGTTCAGCAGCGGCTAGCGAAGATTCAAGCCATGTGGGAGTTACCGGTGCAGATACCAGTGCTAGCCTCA ...............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU17970.1 CAT U17970 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCACTCCCAGTGCCCCACAAGGGCGTCGCTTCCTAAGTCTCTGTGAATTTGTTGGTCAGTGGACGATTCTCGTGTCTCCTCCTGTGTGGGGCCTTGGGGTAGCCAGGGCAGGCCGGGCCTCCGGTGGCCAAGGTCTCGGAGGCCAGGATGCCTGCCCTGGCATGCCTCCGGAGGCTGTGTCGGCACGTGTCCCCGCAGGCTGTCCTTTTCCTGCTGTTCATCTTCTGCCTGTTCAGCGTTTTCATCTCGGCCTACTACCTATATGGCTGGAAGCGAGGCCTGGAGCCCTCGGCGGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU18062.1 CAT U18062 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AATAGACGCTTAGCTGCTGATCTACAGAGAACTTCTTGTAATTAAAAGATTTCAATTCATAGCAAACTGGTGTTTTAAACTATTGCAGTAGCTGGAACTTTTTAGTGTAACCAGCATTTATTGGAGAAGTGAATCACAAGGAAATAAAGATGAGTAAAAGCAAAGATGATGCTCCTCACGAACTGGAGAGCCAGTTTATCTTACGTCTGCCTCCAGAATATGCCTCTACTGTGAGAAGGGCAGTACAGTCTGGTCATGTCAACCTCAAGGACAGACTGACAATTGAGTTACATCCTGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197 HSU18121.1 CAT U18121 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGTCGTGCCGCCGGCGGGTCGGGCCGGGCAATGCCTCGCGGGCGCAATGAATCCGCGGCAGGGGTATTCCCTCAGCGGATACTACACCCATCCATTTCAAGGCTATGAGCACAGACAGCTCAGATACCAGCAGCCTGGGCCAGGATCTTCCCCCAGTAGTTTCCTGCTTAAGCAAATAGAATTTCTCAAGGGGCAG ...............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 186 HSU18242.1 CAT U18242 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGCCACTGCCACCCCTCCCAGACTGTGGACGGGAGGATGGAGTCGATGGCCGTCGCTACCGACGGCGGGGAGAGGCCGGGGGTCCCAGCGGGCTCAGGTCTGTCGGCTTCCCAGCGTCGGGCGGAGCTGCGTCGGAGAAAGCTGCTCATGAACTCGGAACAGCGCATCAACCGGATCATGGGCTTT ....................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 174 HSU18291.1 CAT U18291 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGTGAGGCCGGGCCCGCGCCGCCATGAACCTAGAGCGGCTGCGGAAGCGCGTCCGGCAGTACCTCGACCAGCAACAGTATCAAAGTGCTCTATTTTGGGCAGATAAAGTAGCTTCACTCTCTCGTGAACCCCAGGACATCTATTGGTTGGCTCAGTGTCTTTACCTGACAGCA ........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU18300.1 CAT U18300 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGGGCATGTTTGGCGGGAAGTTGGCTTAGCTCGGCTACCTGTGGCCCCGCAGTTTTGTAGTCCCCGCCTTGTTTCTCCCCAGAGGCCTCTCAATCCTCCCTCCATGATCTTCGCATAGAGCACAGTACCCCTTACACAGGAGGACGCGATGGCTCCCAAGAAACGCCCAGAAACCCAGAAGACCTCCGAGATTGTATTACGCCCCAGGAACAAGAGGAGCAGGAGTCCCCTGGAGCTGGAGCCCGAGGCCAAGAAGCTCTGTGCGAAGGGCTCCGGTCCTAGCAGAAGATGTGACTCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 182 HSU18423.1 CAT U18423 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGGCCCCACGCTGCGCATCCGCGGGTTTGCTATGGCGATGAGCAGCGGCGGCAGTGGTGGCGGCGTCCCGGAGCAGGAGGATTCCGTGCTGTTCCGGCGCGGCACAGGCCAGAGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 191 HSU18759.1 CAT U18759 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCAAAATCGGGCGTTGGGCTTTGCCGGGTGCTTCAGATCAATGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGAC .........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSU18985.1 CAT U18985 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTTTTACTTTTGACGACCACCATGACTGAGATCACTGCTGAAGGAAATGCATCTACAACCACAACTGTGATAGACAGCAAAAATGGATCTGTGCCCAAATCCCCCGGAAAAGTGCTGAAGAGGACAGTCACAGAAGACATAGTGACGACGTTCAGCTCCCCTGCAGCCTGG ......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198 HSU19142.1 CAT U19142 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCCGTCCGGACTCTTTTTCCTCTACTGAGATTCATCTGTGTGAAATATGAGTTGGCGAGGAAGATCGACCTATCGGCCTAGACCAAGACGCTACGTAGAGCCTCCTGAAATGATTGGGCCTATGCGGCCCGAGCAGTTCAGTGATGAAGTGGAACCAGCAACACCTGAAGAAGGGGAACCAGCAACTCAACGTCAG ................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU19178.1 CAT U19178 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ATGCTGAATTCCTGCCAGACCCCTCAGCTTTGCAGAATCTTGCCTCCTGGAATCCTTCAAATCCTGAATGTCTCTTACTTGTGGTGAAGGAACTTGTGCAACAATATCACCAATTCCAATGTAGCCGCCTCCAGGAGAGCTCCCGCCTCATGTTTGAATACCAGACATTACTGGAGGAGCCACAGTATGGAGAGAACATGGAAATTTATGCTGGGAAAAAAAACAACTGGACTGGTGAATTTTCAGCTCGTTTCCTTTTGAAGCTGCCCGTAGATTTCAGCAATATCCCCACATACCTT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 287 HSU19252.1 CAT U19252 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGCGCAACCGGCTCCGGAGCTGCCTGGCGCGGCCGGGCGGGCGGCGCCGCTCAGGCTCGGGCTCCGGCTGGGCCCGGCGCGGCCTCGGGGCTGCCCATGGGGCGCGGGGGGCCGGGCCGGTGACGCCGGACGCCCATGGACGCCTCTGAGGAGCCGCTGCCGCCGGTGATCTACACCATGGAGAACAAGCCCATCGTCACCTGTGCTGGAGATCAGAATTTATTTACCTCTGTTTATCCAACGCTCTCTCAGCAGCTTCCAAGAGAACCAATGGAATGGAGAAGG .........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 179 HSU19556.1 CAT U19556 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CAGGAGTTCCAGATCACATCGAGTTCACCATGAATTCACTCAGTGAAGCCAACACCAAGTTCATGTTCGACCTGTTCCAACAGTTCAGAAAATCAAAAGAGAACAACATCTTCTATTCCCCTATCAGCATCACATCAGCATTAGGGATGGTCCTCTTAGGAGCCAAAGACAACACTGCA .............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 191 HSU19718.1 CAT U19718 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGTCCTCTCTGACACCACCCCGGCCTGCCTCTTTGTTGCCATGAGAGCTGCCTACCTCTTCCTGCTATTCCTGCCTGCAGGCTTGCTGGCTCAGGGCCAGTATGATCTGGACCCGCTGCCGCCGTTCCCTGACCACGTCCAGTACACCCACTATAGCGACCAGATCGACAACCCAGACTACTATGATTAT .........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 HSU19765.1 CAT U19765 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTGACTGCAGCCATGAGCAGCAATGAGTGCTTCAAGTGTGGACGATCTGGCCACTGGGCCCGGGAATGTCCTACTGGTGGAGGCCGTGGTCGTGGAATGAGAAGCCGTGGCAGAGGTGGTTTTACCTCGGATAGAGGTTTCCAGTTTGTTTCCTCGTCTCTT MMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU19906.1 CAT U19906 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACTGGAGGGATCGCAGAGCCCGGCAAGCTGCGAGCGCGCCAAAGACCCTGCGCTTCGGACGAGGAGCCCAAGTCCTCCGAGACGGGGAGGGAGCGCGCCGCGAGGGCTGGAGCTCCGAAGAGGGCCGAGTAGGAGCTGCATGGACAGCATGCGTCTCTCCGCCGGTCCCGACGCGGGGCCCTCGGGCAACTCCAGCCCATGGTGGCCTCTGGCCACCGGCGCTGGCAACACAAGCCGGGAGGCCGAAGCCCTCGGGGAGGGCAACGGCCCACCGAGGGACGTGCGCAACGAGGAGCTG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSU19948.1 CAT U19948 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGCAGTACAGGCAGAAGCTGGCGGCTCATGGCTTCGTGCCCATGGGGTCAGGAACAGGGAGCGAGGAGCCCCTCGGAGGAGCCTCCAGAGGAGGAAATCCCCAAGGAGGATGGGATCTTGGTGCTGAGCCGCCACACCCTGGGCCTGGCCCTGCGGGAGCACCCTGCCCTGCTGGTG ...........................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 188 HSU20166.1 CAT U20166 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAAACGTGAACAGGCTTGAAGTATGGCATGTTGCAAAGATGGTTTCTGCCAAGAAGGTACCCGCGATCGCTCTGTCCGCCGGGGTCAGTTTCGCCCTCCTGCGCTTCCTGTGCCTGGCGGTTTGTTTAAACGAATCCCCAGGACAGAACCAAAAGGAGGAGAAATTGTGCACAGAAAATTTCACCCGC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU20230.1 CAT U20230 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGTTGGGCATGACCAGAGAGAAGCGTGGGGAAGAGTGGGCTGAGGGACTCCACTAGAGGCTGTCCATCTGGATTCCCTGCCTCCCTAGGAGCCCAACAGAGCAAAGCAAGTGGGCACAAGGAGTATGGTTCTAACGTGATTGGGGTCATGAAGACGTTGCTGTTGGACTTGGCTTTGTGGTCACTGCTCTTCCAGCCCGGGTGGCTGTCCTTTAGTTCCCAGGTGAGTCAGAACTGCCACAATGGCAGCTATGAAATCAGCGTCCTGATGATGGGCAACTCAGCCTTTGCAGAGCCC MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU20240.1 CAT U20240 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCGGGGCCGCTCGGAGTGGAGGCCGCCTGGGGGCAGGCGGGCTAGAGGAGCAGGTACATGTGAAGATTTTTTGGCAGCTTAGCGTGGAAACCATTGATCACCCTGCTCTCATTTCTACCTGTTCTGTGTTGGCAAGGGAGAGTGCCCAAATGAGCAAGATATCGCAGCAAAACAGCACTCCAGGGGTGAACGGAATTAGTGTTATCCATACCCAGGCACATGCCAGCGGCTTACAGCAGGTTCCTCAGCTGGTGCCTGCTGGCCCTGGGGGAGGAGGCAAAGCTGTGGCTCCCAGCAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSU20324.1 CAT U20324 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGTCCACACAGGCAGACTTGACCTTGACCAGATAGTCTTCAAGATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCCAGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCATGGCCTGCAGGAAGGCTCTTGACAGCACGACAGTCGCG .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU20362.1 CAT U20362 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCGGCCCCGGCGCGCCCGCGCGAGGACTGTGGGAGCGGCTTCCTTGGATTCCGCGCTTGGCAACGGCTCGGCGTCGCGCTTTGGCCAACCGCTGCGTCGTCCCTGGGCCCGAATAACTGTCGCCCGCTTCCCTCAGCGCGAGGTACAAATGATGCAAAATGTGCACCTGGCTCCAGAGACAGATGAAGATGATCTTTATTCCGGCTATAATGACTACAATCCAATCTATGATATCGAGGAATTGGAGAATGATGCAGCTTTTCAGCAAGCTGTGAGGACTAGTCATGGCAGAAGACCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU20657.1 CAT U20657 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCTGCCGTGAGCGACCGGATGCGGAGACTCAGAAGTCCGAGCTTGGACCCTTAATGAGGACCACACTCCAACGCGGGGCCAGTGGTATCTTATTGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTATGTGGGCTTTGACAGCTGGGACATGTACAATGTGGGTGAACATAACCTATTTCCTGGCCCAATAGACAACTCTGGGCTATTTTCAGATCCTGAGAGTCAGACCTTGAAAGAACACTTAATTGATGAATTGGACTATGTATTGGTCCCTACCGAGGCGTGGAATAAACTACTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 178 HSU20659.1 CAT U20659 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACTCTGCCTGCCTACCTGGTCTGGGAAGATGTTCTACCATATCTCCCTAGAGCACGAAATCCTGCTGCACCCGCGCTACTTCGGCCCCAACTTGCTCAACACGGTGAAGCAGAAGCTCTTCACCGAGGTGGAGGGGACCTGCACAGGGAAGTATGGCTTTGTAATTGCTGTCACCACC ............................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 163 HSU20758.1 CAT U20758 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAAACTCACTACCATGAGAATTGCAGTGATTTGCTTTTGCCTCCTAGGCATCACCTGTGCCATACCAGTTAAACAGGCTGATTCTGGAAGTTCTGAGGAAAAGCAGCTTTACAACAAATACCCAGATGCTGTGGCCACATGGCTAAACCCTGACCCATCTCAG MMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU20896.1 CAT U20896 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAGATCCTAGAGAAGTCTCAAATTGAAGCCATTGCTTCCTCGTTAGGGAACGCGAATCCCCTGAGCTGAAGGAGAAGGAAAAATGGATCCGCTTTCTTAAACCTTTCCAGAATTTGCCCCTAGAACCACTCCTATTCTTGACGCCCAGAATGGTCAGTGCCTCACAGAATGAGGTTCCTGCGGCGCACCCCTGGAAGAACTGGCCTACAGACGGTCTTCGCGTGGCTCTGGACGTTCTGAGCGAGGGCTCGATTTGGAGTCAAGAAAGCTCTGCAGGGACAGGTAGAGCTGACCGGTCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198 HSU20938.1 CAT U20938 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAGAGTATCCTGGCTTTAAATCCTCGAACACAAACTCATGCAACTCTGTGTTCCACTTCGGCCAAGAAATTAGACAAGAAACATTGGAAAAGAAATCCTGATAAGAACTGCTTT ................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 HSU20979.1 CAT U20979 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGAGTGCGGGGCGCCCGGCGCCAGGGGAGCCGCCACAGCCATGGATTGCAAAGATAGACCAGCTTTTCCAGTTAAGAAGTTAATACAAGCCCGTCTGCCGTTTAAGCGCCTGAATCTTGTCCCAAAGGGGAAAGCCGATGACATGTCAGACGATCAGGGTACTTCTGTGCAAAGTAAAAGCCCCGATTTA ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 212 HSU20980.1 CAT U20980 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCTTGTCTTGAAGAAGTAGAACGGTGCCCGAGAAACGTTTTTCCCCTTCGAGACTCAGGAGGATGAAAGTCATCACTTGTGAAATAGCCTGGCACAACAAGGAGCCCGTGTACAGCCTGGACTTCCAGCATGGGACGGCTGGGAGGATCCACAGACTGGCGTCTGCCGGCGTGGACACCAATGTCAGGATCTGGAAGGTAGAAAAGGGACCA ..............................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228 HSU21090.1 CAT U21090 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGGGATGCGGCGCGCCGCGCGTTGAACCTCCTTGGCCTGGGCGAAGCTGTGTGGACCAAGCAAGTCAGGAGTGTGGCCATGTTTTCTGAGCAGGCTGCCCAGAGGGCCCACACTCTACTGTCCCCACCATCAGCCAACAATGCCACCTTTGCCCGGGTGCCAGTGGCAACCTACACCAACTCCTCACAACCCTTCCGGCTAGGAGAGCGCAGCTTTAGCCGGCAGTAT ..............................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234 HSU21128.1 CAT U21128 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGATTCTTGTCCATAGTGCATCTGCTTTAAGAATTAACGAAAGCAGTGTCAAGACAGTAAGGATTCAAACCATTTGCCAAAAATGAGTCTAAGTGCATTTACTCTCTTCCTGGCATTGATTGGTGGTACCAGTGGCCAGTACTATGATTATGATTTTCCCCTATCAATTTATGGGCAATCATCACCAAACTGTGCACCAGAATGTAACTGCCCTGAAAGCTACCCAAGTGCC ....................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU21663.1 CAT U21663 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTCCTTACACCTTAGCCTTTGGCTCCTTTGACCACTCGAAGCCCCACAGCGTGTTCCAGCGGACTTCACCAGCAGACCCAGAAGTGGTGGGTGAAACACTGCCTCTGTTCCTCCTTGAGCCTGTCGGGAGCTGCTGCCTGCCACCACCATGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAGTCTTCATCAGCTGCAGCTAGCCAAGGCTGGGTGTTACCAGAAGGCAAAATCGTGCCAAACACTGTTTTTGTTGGTGGAATTGATGCTAGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 206 HSU21936.1 CAT U21936 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCACCTGCCAGGAGCACGTCCCGCCGGCAGTCGCAGGAGCCCTGGGAGCCGCCGCCATGGGAATGTCCAAATCACACAGTTTCTTTGGTTATCCCCTGAGCATCTTCTTCATCGTGGTCAATGAGTTTTGCGAAAGATTTTCCTACTATGGAATGCGAGCAATCCTGATTCTGTACTTCACAAATTTCATCAGCTGGGATGATAAC ........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 203 HSU21943.1 CAT U21943 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AAGACATATCAAGATTTAAAACATAAATAGCTTGGAACACCCTGAAGAGCAACATGGGAGAAACTGAGAAAAGAATTGAAACCCATAGAATAAGATGTCTTTCCAAGTTGAAGATGTTTCTGTTGGCAATAACATGTGCATTTGTATCCAAAACACTGTCTGGATCTTATATGAATTCCATGCTCACACAAATAGAGAGACAA .....................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU22055.1 CAT U22055 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCACCAACACCGACACCCACATTGACACCTCCAGTCCGGCCAGCCGCTCCACTCGTTGCCTTTGCATCTCCACACATGGCGTCCTCGCGCAGAGCGGCGGCTCCTCCGGGGGACCCGCGGTCCCCACCGTGCAGCGGGGCATCATCAAGATGGTCCTCTCAGGGTGCGCCATCATTGTCCGAGGTCAGCCTCGTGGTGGGCCTCCTCCTGAGCGGCAGATCAACCTCAGCAACATTCGTGCTGGAAATCTTGCTCGCCGGGCAGCCGCCACACAACCTGATGCAAAGGATACCCCTGAT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 271 HSU22233.1 CAT U22233 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCCGCTCCGCACTGCTCACTCCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAGATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAGCCATCTGATGCCTTAATTTTGGGGAAGATA .........................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 194 HSU22386.1 CAT U22386 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GAATTCGGGCGGCCGACGCGCCCGGCCGGGACCCAGCTGCCCGTATGACCGCGCCGGGCGCCGCCGGGCGCTGCCCTCCCACGACATGGCTGGGCTCCCTGCTGTTGTTGGTCTGTCTCCTGGCGAGCAGGAGTATCACCGAGGAGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACACCTGCAGTCT ............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU22492.1 CAT U22492 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTGGCTGTGCCTAACAGACGGCTGGATCTCAAAGTCTCTGGTTGTTTTTCTTTCCTAGAATCCAGCCTAAGGAGGCCCCCAACCAGATACCCAACTCCAAGGCACCTCCCACCTGCCCAGGGCGCAAATCGTCAACGGTCCCAGCTACAATGCAGGCCGCTGGGCACCCAGAGCCCCTTGACAGCAGGGGCTCCTTCTCCCTCCCCACGATGGGTGCCAACGTCTCTCAGGACAATGGCACTGGCCACAATGCCACCTTCTCCGAGCCACTGCCGTTCCTCTATGTGCTCCTGCCCGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250 HSU22512.1 CAT U22512 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTACCAGCATCGGGAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGCCTAGAGCTAAGTACCAAAAACAGAGAACGATGGTGCCATGAAATCCAGATTATGAAGAAGTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATATTTTGATTCATGATGTGCCTCTTCTAGCAATGGAATACTGTTCTGGAGGAGATCTCCGAAAGCTGCTCAACAAACCAGAAAATTGTTGT ....................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU22526.1 CAT U22526 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTGCCTACTGCTCATGGGTGTGGAGACTGATATTCTGGAAGACTGATAGGCAGATTTACTATTAACAAACACATAGTCTGTGGCCCAGCAAAGCCACCCCAATCCCTGCACAAGGGTAAAAGGCCAGCATTAGAGCACTGCAGCAGCAATGACGGAGGGCACGTGTCTGCGGCGCCGAGGGGGCCCCTACAAGACCGAGCCCGCCACCGACCTCGGCCGCTGGCGACTCAACTGCGAGAGGGGCCGGCAGACGTGGACCTACCTGCAGGACGAGCGCGCCGGCCGCGAGCAGACCGGC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU22680.1 CAT U22680 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCTTGGTCCACGACGGCCCCAGCACCCAACTTTACCACCCTCCCCCACCTCTCCCCCGAAACTCCAGCAACAAAGAAAAGTAGTCGGAGAAGGAGCGGCGACTCAGGGTCGCCCGCCCCTCCTCACCGAGGAAGGCCGAATACAGTTATGGCCACCCAGGTAATGGGGCAGTCTTCTGGAGGAGGAGGGCTGTTTACCAGCAGTGGCAACATTGGAATGGCCCTGCCTAACGACATGTATGACTTGCATGACCTTTCCAAAGCTGAACTGGCCGCACCTCAGCTTATTATGCTGGCA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218 HSU22961.1 CAT U22961 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGGTAGACGAGGGCCCCAATGGGCTGAAGCTCATCTCGGAAGTGATTGGGGAGCGCCTCGGCATCCCCATGAGTGTGCTGATGGGGGCCAACATTGCCAGCGAGGTGGCTGATGAGAAGTTCTGTGAGACAACCATTGGTGAGAGCCCCCTGGCACCTGCATACACAGTGCATCTAGTTGCATCCCCTCCCCAAACTGCCCCAACCCCACTTAGCCAT MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 HSU22961.2 CAT U22961 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCTGCAAGGACCCGGCCCAGGACAACTCCTGAAAGAGCTGATGCAGACACCAAACTTCCGTATCACAGTGGTGCAAGAGGTGGACACTGTAGAGATCTGTGGAGCCTTAAAGGTGAGAGGGGCACAGAGGCAGCTATGGGGTGAGGAGAAGGCCCCAAAGGAGGTCTGGCTGAGCTCTGCAAGGCTGCAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU23070.1 CAT U23070 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTCCGGCAGCGGCCCGAAACCCAGCCCCGCCGCTGACGGAGCCCGCCGCTCCGGGCAGGGCCCATGCCCTGCGCGCTCCGGGGGTCGTAGCTGCCGCCGAGCCGGGGCTCCGGAAGCCGGCGGGGGCGCCGCGGCCGTGCGGGGCGTCAATGGATCGCCACTCCAGCTACATCTTCATCTGGCTGCAGCTGGAGCTCTGCGCCATGGCCGTGCTGCTCACCAAAGGTGAAATTCGATGCTACTGTGATGCTGCCCACTGTGTAGCCACTGGTTATATGTGTAAATCTGAGCTCAGCGCC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU23143.1 CAT U23143 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGAAACAGGCTGGCTGGACAACTGGCAGCTTGGTGTGGCCTTAGAAGCATGAGTGAGGGTGGCCGGGAGACGATTTGTCTGGACTGTTGTGATTTCACCCTGACTTTTCCTGCCTTCAGCCTCTGCAGAGATGTGGGCAGCTGGTCAGGATGGCCATTCGGGCTCAGCACAGCAACGCAGCCCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGTGGGAGTTGCTGCAGAGGGAGAAGGACAGGCAGTGTCGTGGCCTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223 HSU23851.1 CAT U23851 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTGGGGTGGAGCAGAGAAGTTTCTGTATTCAGCTGCCCAGGCAGAGGAGAATGGGGTCTCCACAGCCTGAAGAATGAAGACACGACAGAATAAAGACTCGATGTCAATGAGGAGTGGACGGAAGAAAGAGGCCCCTGGGCCCCGGGAAGAACTGAGATCGAGGGGCCGGGCCTCCCCTGGAGGGGTCAGCACGTCCAGCAGTGATGGCAAAGCTGAGAAGTCC .........................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219 HSU23946.1 CAT U23946 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCGGTCTCTCCTTGGGAAAAAATAAAATTTGAACCTTTTGGAGCTGTGTGCTAAATCTTCAGTGGGACAATGGGTTCAGACAAAAGAGTGAGTAGAACAGAGCGTAGTGGAAGATACGGTTCCATCATAGACAGGGATGACCGTGATGAGCGTGAATCCCGAAGCAGGCGGAGGGACTCAGATTACAAAAGATCTAGTGATGATCGGAGGGGTGATAGA .....................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 171 HSU24074.1 CAT U24074 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTGTCTGCACAGACAGCACCATGTCGCTCATGGTCGTCAGCATGGTGTGTGTTGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGG .....................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 257 HSU24105.1 CAT U24105 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AGGCGCTTCCGGAAACCGCGGGAGAGGGTCGCTGACGTGGAGGCGTCCGAAGGGCAGCAGGGTGTGTCGGGGCTCGGATTAAGACATCGGAGTCGGAGACCTGAGAGATGTTAACCAAATTCGAGACCAAGAGCGCGCGGGTCAAAGGGCTCAGCTTTCACCCCAAAAGACCTTGGATCCTGACTAGTTTACATAATGGGGTCATCCAGTTATGGGACTATCGGATGTGCACTCTCATTGACAAGTTTGATGAACAT ...........................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU24152.1 CAT U24152 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCCCGCCACGGCAGCGACAGCGGGCAGGAGGGAGAAAGTGAAGGTTGGGCGACACTTGGCCTCACTCCCGGCTAGGCGCACCCACGGGGAGGAGAGGAGGAGCCGAGAGAGCTGAGCAGCGCGGAAGTAGCTGCTGCTGGTGGTGACAATGTCAAATAACGGCCTAGACATTCAAGACAAACCCCCAGCCCCTCCGATGAGAAATACCAGCACTATGATTGGAGTCGGCAGCAAAGATGCTGGAACCCTAAACCATGGTTCTAAACCTCTGCCTCCAAACCCAGAGGAGAAGAAAAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 263 HSU24169.1 CAT U24169 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGCCGGTCTCCGTCGTGACCTCTGACGGTTTCTGAGCGTTGGCCTTTGGCACGCGCTACACCCTTTTGCTTTGGTTCTGCCATGCCGATGTACCAGGTAAAGCCCTATCACGGGGGCGGCGCGCCTCTCCGTGTGGAGCTTCCCACCTGCATGTACCGGCTCCCCAACGTGCACGGCAGGAGCTACGGCCCAGCGCCGGGCGCTGGCCACGTGCAGGAAGAGTCTAACCTG .................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU24183.1 CAT U24183 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTTGACTCTGCGTAACCCTCTCTCTGTCCCTCTGTTGGTCCCTTCAGCTGGTGGTTAAGCGTCTGGGATATGACACCCGGGTTACTGTCTTGGGGCATGTGCAGAGGGGTGGGACGCCATCAGCCTTTGACAGAATTCTGGGCAGCAGGATGGGTGTGGAAGCAGTGATGGCACTTTTGGAGGGGACCCCAGATACCCCAGCCTGTGTAGTGAGCCTCTCTGGTAACCAGGCTGTGCGCCTGCCCCTCATGGAATGTGTCCAGGTGACCAAAGATGTGACCAAGGCCATGGATGAGAAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU24186.1 CAT U24186 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCAGCCTCCCAGCATTCAATCGTAGCCTTTCGGACAGCTCGAAGCCCTTCTGTGGAGAGCTCGAAGCCTTCTGTGGAGAACTCAAAGCCGTCCGTGGAGCCCCAGACGAGCCAAAGCCCACCTTCTCCTCAGCCTGAGCTGTCTTGAAGATGAGTAAGAGTGGGTTTGGGAGCTATGCGAGCATTTCTGCTGCTGATGGAGCGAGTGGAGGCAGTGACCAACTGTGTGAGAGAGATGCAACTCCTGCTATTAAGACCCAAAGACCTAAGGTCCGAATTCAGGACGTTGTACCGTGTAAC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 196 HSU25112.1 CAT U25112 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CATTAATGTGGGTGATTTAGCTCGAGAAGTCTGATCATCGGATATCATGGAGTCTGGCAAGACGGCTTCTCCCAAGAGCATGCCGAAAGATGCACAGATGATGGCACAAATCCTGAAGGATATGGGGATTACAGAATATGAGCCAAGAGTTATAAATCAGATGTTGGAGTTTGCCTTCCGATATGTGACCACAATT ..............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 292 HSU25128.1 CAT U25128 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCCGGTGGCCCGGGCCCGACCACCCCAGCTGCGCGTCGTTACTGGCCACAAGTTTGCTCTGGGCCAGCCAAGTTGGCAACTTGGAAGCTTCTCCCGGGCTCTGGAGGAGGGTCCCTGCTTCTTCCTACAGCCGTTCCGGGCATGGCCGGGCTGGGGGCGTCGCTCCACGTCTGGGGTTGGCTAATGCTCGGCAGCTGCCTCCTGGCCAGAGCCCAGCTGGATTCTGATGGCACCATTACTATAGAGGAGCAGATTGTCCTTGTGCTGAAAGCGAAAGTACAATGTGAACTC ..............................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU25138.1 CAT U25138 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCTGGAGACGGGCGGGGAGGCCAAACTTCCTGCTGAAGCTCTGTGGCCTCTTTTGGGGTGGGGGCGGGGGTCCAGGCAGAAAGAAACTGTCTGCTGCTCAAGACCCACAGGACGCCCGGAAGACTAAATGATCACTGCCCCCAGTGAATATGGTGAAGAAGCTGGTGATGGCCCAGAAGCGGGGAGAGACACGAGCCCTTTGCCTGGGTGTAACCATGGTGGTGTGTGCCGTCATCACCTACTACATCCTGGTCACGACTGTGCTGCCCCTCTACCAGAAAAGCGTGTGGACCCAGGAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU25265.1 CAT U25265 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TCCCCTCTTCCCTCCCCCTCATCCTCCATTCCCTTGTTTTCACCCTCTGTCCTCTGCCCGTCACTCCCCTTGTCACCTCTTGGAGCCCCCTCCTAACCAGCGGCCAGTGGGTTTCCCATACCCCAGGATGTGAGCCTCTTTAACCTGTAATGCTGTGGCTAGCCCTTGGCCCCTTTCCTGCCATGGAGAACCAGGTGCTGGTAATTCGCATCAAGATCCCAAATAGTGGCGCGGTGGACTGGACAGTGCACTCCGGGCCGCAGTTACTCTTCAGGGATGTGCTGGATGTGATAGGCCAG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 195 HSU25433.1 CAT U25433 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens ACCAGCACACCACTGTGTAATTTCTATACGAGGTTTGGCTTGGATATGGTGCTAAATGAAGAGATTCCTCGACATTTGCTTCTCACTCAAAATAATGACATAATTCCGAAGCACCATATCTTAATCTTACCAGCAGTAGACAGTTATCAAAAAAGTGTTAATGATTTAAGAGCTCTAACATTTTCTAAGTTTCAA .............................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU25435.1 CAT U25435 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GCCGCGGGGGGTGTGGCGCGGAGAATGATTACGGACCTGAAGCCAAAGAACAAGATGCGCTAGTGGACAGATTGCTGACCAGGGGCTTGAGAGCTGGGTTCTATTTTCCCTCCTCAAACTGACTTTGCAGCCACGGAGAGGCAGGGGAAATGGAAGGTGATGCAGTCGAAGCCATTGTGGAGGAGTCCGAAACTTTTATTAAAGGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAAGAAGATGCCTGCCACTTACCCCAGAACCAGACGGATGGGGGTGAGGTG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU25997.1 CAT U25997 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACAACAACAAAAAAAAATCCTCATCAAATCCTCACCTAAGCTTTCAGTGTATCCAGATCCACATCTTCACTCAAGCCAGGAGAGGGAAAGAGGAAAGGGGGGCAGGAAAAAAAAAAAACCCAACAACTTAGCGGAAACTTCTCAGAGAATGCTCCAAAACTCAGCAGTGCTTCTGGTGCTGGTGATCAGTGCTTCTGCAACCCATGAGGCGGAGCAGAATGACTCTGTGAGCCCCAGGAAATCCCGAGTGGCGGCTCAAAACTCAGCTGAAGTGGTTCGTTGCCTCAACAGTGCTCTA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 190 HSU26174.1 CAT U26174 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens AACACATTTCATCTGGGCTTCTTAAATCTAAATCTTTAAAATGACTAAGTTTTCTTCCTTTTCTCTGTTTTTCCTAATAGTTGGGGCTTATATGACTCATGTGTGTTTCAATATGGAAATTATTGGAGGGAAAGAAGTGTCACCTCATTCCAGGCCATTTATGGCCTCCATCCAGTATGGCGGACATCAC ........................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 288 HSU26424.1 CAT U26424 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGCGGAGTTACGGGAAAGTTGGTCCGAGTTCCCAGAGTTTCCCTCTGTGGTGCCCTAGGCTTCGGCCCGGTGCCCCGGCTCCTTTCCTCCTTTCGGCCTTCGCCGTCCACCAGGTCCCTCTCTCTGTCCCGGCCGCCATGGAGCAGCCGCCGGCGCCTAAGAGTAAACTAAAAAAGCTGAGTGAAGACAGTTTGACTAAGCAGCCTGAAGAAGTTTTTGATGTATTAGAGAAGCTTGGAGAAGGGTCTTATGGAAGTGTATTTAAAGCAATACACAAGGAATCCGGT ..........................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU26455.1 CAT U26455 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGAATACTTTTGGAAATAAGGTAATATATGCCTTTTGAGCTGTCTTGACGTTCACAGATATAAAATATTAAATATATTTTAATTTTGTGCCCTTGCAGATTGATCACTTATTCATTAGTAATTTACCAGAGATTGTGGTGGAGTTATTGATGACGTTACATGAGCCAGCAAATTCTAGTGCCAGTCAGAGCACTGACCTCTGTGACTTTTCAGGGGATTTGGATCCTGCTCCTAATCCACCTCATTTTCCATCGCATGTGATTAAAGCAACATTTGCCTATATCAGCAATTGTCATAAA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 172 HSU26554.1 CAT U26554 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAAAAATGAGGACGAAAGAAGATGATGGATGCACAGTACAAATGCTATGACCGAATGCAGCAGTTACCCGCATATCAAGGAGAAGGTCCATATTGCAATCGCACCTGGGATGGATGGCTGTGCTGGGATGACACACCGGCTGGAGTATTGTCCTATCAGTTCTGCCCAGAT ......................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU26555.1 CAT U26555 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CATCTTCCAGCACCGTCCCGCACCCTCCGCATCCTTCCCCGGGCCACCACGCTTCCTATGTGACCCGCCTGGGCAACGCCGAACCCAGTCGCGCAGCGCTGCAGTGAATTTTCCCCCCAAACTGCAATAAGCCGCCTTCCAAGGCCAAGATGTTCATAAATATAAAGAGCATCTTATGGATGTGTTCAACCTTAATAGTAACCCATGCGCTACATAAAGTCAAAGTGGGAAAAAGCCCACCGGTGAGGGGCTCCCTCTCTGGAAAAGTCAGCCTACCTTGTCATTTTTCAACGATGCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 203 HSU26596.1 CAT U26596 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GGCGGGCGCGCTGCTCCTCCGCCTCGCGGACCCCGGAAGCGCGCGTGGCCGCCATGGCGCGGAATGTGGTGTACCCCCTGTACCGGCTGGGTGGCCCACAACTTCGGGTGTTCCGAACCAACTTCTTCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCCCGAGGACACCGTGCAGTTCCGGATCCCCATGGAAATGACAAGG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU26711.1 CAT U26711 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens GTTGCTCCTTCTTCGGGAGCGAGCTGTTCTCAGCGATCCCACTCCCAGCCGGGGCTCCCCACACACACTGGGCTGCGTGCGTGTGGAGTGGGACCCGCGCACACGCGTGTCTCTGGACAGCTACGGCGCCGAAAGAACTAAAATTCCAGATGGCAAACTCAATGAATGGCAGAAACCCTGGTGGTCGAGGAGGAAATCCCCGAAAAGGTCGAATTTTGGGTATTATTGATGCTATTCAGGATGCAGTTGGACCCCCTAAGCAAGCTGCCGCAGATCGCAGGACCGTGGAGAAGACTTGG .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 208 HSU26744.1 CAT U26744 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTTCAAAGAATATAGATGGTTTTGAAAAGTTCATGCTGTCCCTTCATTGAATTTTAGAATGATTGAAGATAGTGGGAAAAGAGGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTG ..........................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221 HSU27109.1 CAT U27109 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CTGCTATCAAAAAGGCCATAAGGATTTTGTCCCCAAATTTCACATGAGCTACCTTGCTTCAAACTACTGAGATGAAGGGGGCAAGATTATTTGTCCTTCTTTCTAGTTTATGGAGTGGGGGCATTGGGCTTAACAACAGTAAGCATTCTTGGACTATACCTGAGGATGGGAACTCTCAGAAGACTATGCCTTCTGCTTCAGTTCCTCCAAATAAAATACAA .......................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 196 HSU27203.1 CAT U27203 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TTCAAGAGATCAGGAGGAACATTCGACCTGAGAAAGACAGATTGCAATGACTGAGATTATTTTGCTAATTTTTTTTCCAGCCTATTTCCTTAATGCTGTAAGGAGGCAAAAGTTGCTTGAACAGAGCATCCAGTCTGCCCAGGAGACTGAAAAATCCTTACACTTAATCCAGGAGTCCCTCACATTCATTGACAAG MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 177 HSU27266.1 CAT U27266 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CACCCTGGCCCCCCAGCCAGTCCAGCAATGATGGAAAAAAACACCTCCGAGGGCCCTGCCTGCAGTCCAGAGGAGACCGCATCTGAATCTGCCAAGGTGCCCACAGCAGAGCCTCCCGGAGAAGTGGCAGTATCAGAGTCCACCAGAGAAGAGCAGGTGCCCAAGCCGCACGGCCCT MMMMMMMMMMMMMMMMMMMMMMMMMMMiEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU27333.1 CAT U27333 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens TGGCCCCCCCAGTGTCACGGGCATCCAGACGGGATCCAGTGCATCCTCTTTTAGAAGAAAGGCCTGTCTCCAGGTCCCCGAGTCCCTCTAGCATCTCCCAGAAGGTGTCAAGACGCAGCAGTGTCCAGGAGCGGCAGAGACTCTGACCCATGGATCCCCTGGGCCCGGCCAAGCCACAGTGGTCGTGGCGCTGCTGTCTGACCACGCTGCTGTTTCAGCTGCTGATGGCTGTGTGTTTCTTCTCCTATCTGCGTGTGTCTCAAGACGATCCCACTGTGTACCCTAATGGGTCCCGCTTC .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU27459.1 CAT U27459 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCGAAGGTACCTTCCCTGCGGCGGCGACTCAGCGGGGTGTCGTTCGGCCGGCGTGACGCAGCCGGATCGGCGCCAGACGGAAACCTAGCGGTGACTGTATCTGAATTTTGCAGCTGCAGAATGTGTAGTACCTTAAAAGGTTGGCAACAATGAGTAAACCAGAATTAAAGGAAGACAAGATGCTGGAGGTTCACTTTGTGGGAGATGATGATGTTCTTAATCACATTCTAGATAGAGAAGGAGGAGCTAAATTGAAGAAGGAGCGAGCGCAGCTTTTGGTCAACCCCAAAAAAATAATA .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSU27467.1 CAT U27467 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CCAGCTCAAGACTTTGCTCTCCACCAGGCAGAAGATGACAGACTGTGAATTTGGATATATTTACAGGCTGGCTCAGGACTATCTGCAGTGCGTCCTACAGATACCACAACCTGGATCAGGTCCAAGCAAAACGTCCAGAGTGCTACAAAATGTTGCGTTCTCAGTCCAAAAAGAAGTGGAAAAG ..................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 299 HSU27655.1 CAT U27655 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. Homo sapiens CGTGTGTGCAGCAGCCTGCAGCTGCCCCAAGCCATGGCTGAACACTGACTCCCAGCTGTGGGCTTCACCATTACAGACTCCCCAGGGCTTCAAAGACTTCTCAGCTTCGAGCATGGCTTTTGGCTGTCAGGGCAGCTGTACAATAGTGGATGTTTGAGACGGAGGCAGATGAGAAGAGGGAGATGGCCTTGGAGGAAGGGAAGGGGCCTGGTGCCGAGGATTCCCCACCCAGCAAGGAGCCCTCTCCTGGCCAGGAGCTTCCTCCAGGACAAGACCTTCCACCCAACAAGGACTCCCCT .....................................................................................................................................................iEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 184 HSU28015.1 CAT U28015 Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria;