[Bioperl-l] bioperl on Mac OSX

Jason Stajich jason.stajich at duke.edu
Sat Feb 5 11:31:45 EST 2005

You need to install the dependancies if you want all of the 

When you tried to install from CPAN did you install Bundle::BioPerl?  
This is described in the INSTALL document.

Jason Stajich
jason.stajich at duke.edu

On Feb 4, 2005, at 10:42 AM, Arya Akmal wrote:

> Hello-
>  I've had some trouble installing the bioperl bundle on Mac OSX 
> (specifically 10.3.7). I've tried both though cpan and by downloading 
> the  bioperl tarfile and making it. The problem is that a large number 
> of the tests fail. I can do a forced install, but find that a 
> significant part of the functionality is missing ... as an example, 
> the HTML HeadParser.pm module is missing, so I cannot do remote NCBI 
> BLAST queries. Is this a common problem on OSX platforms, and are 
> there any workarounds?
> thanks.
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