[Bioperl-l] getting database info from the blast report

Brian Osborne brian_osborne at cognia.com
Thu Feb 10 09:22:57 EST 2005


It's not clear what database information you're looking for. And when you
say "separate page", do you mean Web page? For a reasonably complete list of
the methods available to you, including ones that return database details,
please see the SearchIO HOWTO (http://bioperl.org/HOWTOs).

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Jun Zhao
Sent: Thursday, February 10, 2005 5:39 AM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] getting database info from the blast report


Does anybody know, in the blastn report, how to get the information
about the database which each hit result is queried from? I am parsing
the NCBIBlastn report.

For who are familiar with that blast report, the detailed information
about the DBSource is stored in a separate page from the blast report.
Is there any tool from BioPerl could access that information?

Thank you very much for any help!

Best regards,

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