[Bioperl-l] AlignIO and SimpleAlign

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Tue Feb 15 11:09:50 EST 2005


Is it safe to say that if I read in alignment using AlignIO, then call
remove_gaps on the SimpleAlign object, then access each sequence using
each_seq, and print each sequence out as fasta using SeqIO, that I will
have the original sequences that went to make up the alignment (exactly,
with gaps removed etc)?


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