[Bioperl-l] no data for midline problem

Jason Stajich jason.stajich at duke.edu
Thu Feb 17 17:56:34 EST 2005

It's probably a bug in SearchIO::blast - a lot of them have been fixed 
since 1.4 so it may already have been fixed.  You'd need to find a 
report which demonstrates the problem and test it on 1.5 or live-code.
Jason Stajich
jason.stajich at duke.edu

On Feb 18, 2005, at 3:29 AM, Guojun Yang wrote:

> Hi, All,
> Thank Chris and Jonathan's for their help on the installation of 
> bioperl in slave nodes. I tarred up the whole .cpan fold and put into 
> the slaves and seem to work well.
> I have a script to parse multiple blast search results. For some blast 
> results, it worked very well. But at some point, it stopped and 
> returned errors saying "no data for midline" and sometimes with 
> multiple vertical lines. I looked at the code for Search::IO 
> documentation. This error message is thrown out when
>  /^(Query|Sbjct):\s+(\d+).../ fails.
>  I also see many other people have asked this similar questions on "no 
> data for midline". Can any one give me a clue to fix or to find a 
> place descirbing this problem comprehensively?
> Thanks in advance.
> Guojun Yang
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
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