[Bioperl-l] Bio::DB::GenBank

Brian Osborne brian_osborne at cognia.com
Fri Feb 18 17:20:03 EST 2005


Please see the Feature and Annotation HOWTO, it talks about to get the data
stored in the Feature table of a Genbank entry.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Allen Liu
Sent: Friday, February 18, 2005 4:57 PM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] Bio::DB::GenBank


I have used the sample script that extracts the GB
file and the sequence.  To extract the DNA sequence, I

$dnaseq = $seqobj->seq();

However, how does acquire the translation product of
the coding region.  The reason why I need to implement
this step is because I cannot simply blast with:

my $blast_result = blast_sequence($seqobj);

Any information would be greatly appreciated.

Allen Liu

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