[Bioperl-l] "no data for midline" still occurs with bioperl 1.5

Madeleine Lemieux mlemieux at bioinfo.ca
Tue Feb 22 17:07:51 EST 2005

The method "next_result" in Bio/SearchIO/blast.pm sometimes gets 
confused when it's processing the 3 lines of alignment data as a block 
and ends up not picking up the midline data. In files returned from a 
local web server running wwwBlast, HTML tags consistently cause this 
problem. I have only sporadically seen the problem with blast results 
returned from the NCBI server, though.

Do you have a search that consistently causes the problem? If so, could 
you post your search parameters so I can try reproduce it?


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