[Bioperl-l] "no data for midline" still occurs with bioperl 1.5
mlemieux at bioinfo.ca
Tue Feb 22 17:07:51 EST 2005
The method "next_result" in Bio/SearchIO/blast.pm sometimes gets
confused when it's processing the 3 lines of alignment data as a block
and ends up not picking up the midline data. In files returned from a
local web server running wwwBlast, HTML tags consistently cause this
problem. I have only sporadically seen the problem with blast results
returned from the NCBI server, though.
Do you have a search that consistently causes the problem? If so, could
you post your search parameters so I can try reproduce it?
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